Wall clock time and date at job start Tue Mar 31 2020 15:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31536 * 1 3 3 Si 1.86797 * 119.99786 * 2 1 4 4 H 1.48497 * 109.47462 * 240.00390 * 3 2 1 5 5 H 1.48505 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47197 * 119.99938 * 3 2 1 7 7 C 1.38684 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99699 * 179.97438 * 7 2 1 9 9 O 1.34800 * 120.00247 * 359.97438 * 7 2 1 10 10 C 1.35581 * 116.99945 * 185.21366 * 9 7 2 11 11 C 1.38790 * 120.15002 * 6.07608 * 10 9 7 12 12 C 1.38074 * 120.06128 * 179.97438 * 11 10 9 13 13 C 1.38529 * 120.38209 * 359.97438 * 12 11 10 14 14 C 1.37889 * 120.30824 * 0.02562 * 13 12 11 15 15 C 1.39559 * 119.92491 * 0.02562 * 14 13 12 16 16 C 1.47798 * 120.19011 * 179.97438 * 15 14 13 17 17 N 1.32869 * 120.93185 * 124.45299 * 16 15 14 18 18 C 1.32239 * 121.46853 * 179.76185 * 17 16 15 19 19 N 1.31232 * 123.01484 * 0.54145 * 18 17 16 20 20 C 1.33997 * 120.50310 * 359.73456 * 19 18 17 21 21 C 1.40319 * 121.98853 * 179.97438 * 20 19 18 22 22 F 1.35099 * 120.23817 * 0.02562 * 21 20 19 23 23 C 1.36690 * 119.51915 * 180.02562 * 21 20 19 24 24 F 1.35101 * 119.51937 * 180.02562 * 23 21 20 25 25 C 1.39456 * 120.96981 * 359.97438 * 23 21 20 26 26 C 1.36332 * 120.91228 * 0.02562 * 25 23 21 27 27 C 1.39945 * 119.57660 * 359.97438 * 26 25 23 28 28 H 0.97000 * 120.00161 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.97149 * 359.97438 * 11 10 9 30 30 H 1.07999 * 119.80800 * 179.70043 * 12 11 10 31 31 H 1.07998 * 119.84794 * 180.02562 * 13 12 11 32 32 H 1.07994 * 120.03948 * 180.02562 * 14 13 12 33 33 H 1.08005 * 118.48966 * 180.27320 * 18 17 16 34 34 H 1.07999 * 119.54232 * 180.02562 * 25 23 21 35 35 H 1.08005 * 120.20938 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6966 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6965 1.2125 7 6 2.0088 -1.2010 -0.0005 8 1 3.0888 -1.2010 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0690 -3.5030 0.1087 11 6 3.4355 -3.4295 0.3404 12 6 4.1813 -4.5861 0.4518 13 6 3.5739 -5.8256 0.3343 14 6 2.2174 -5.9167 0.1041 15 6 1.4514 -4.7559 -0.0118 16 6 -0.0029 -4.8467 -0.2591 17 7 -0.8722 -4.2561 0.5540 18 6 -2.1753 -4.3266 0.3402 19 7 -2.7000 -4.9827 -0.6680 20 6 -1.9149 -5.6199 -1.5473 21 6 -2.4425 -6.3310 -2.6359 22 9 -3.7786 -6.3903 -2.8265 23 6 -1.5947 -6.9631 -3.5019 24 9 -2.1027 -7.6473 -4.5503 25 6 -0.2131 -6.9114 -3.3199 26 6 0.3302 -6.2289 -2.2722 27 6 -0.5095 -5.5705 -1.3668 28 1 -0.4850 0.8400 0.0004 29 1 3.9159 -2.4667 0.4335 30 1 5.2452 -4.5241 0.6273 31 1 4.1655 -6.7247 0.4233 32 1 1.7483 -6.8852 0.0136 33 1 -2.8383 -3.8247 1.0294 34 1 0.4355 -7.4190 -4.0185 35 1 1.4019 -6.1959 -2.1423 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243583591.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:35 Heat of formation + Delta-G solvation = -34.148072 kcal Electronic energy + Delta-G solvation = -26772.018908 eV Core-core repulsion = 22564.524138 eV Total energy + Delta-G solvation = -4207.494769 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.72842 -49.72996 -42.49236 -40.68149 -38.57302 -38.18756 -35.56008 -34.30755 -32.79253 -31.41715 -31.07766 -30.42499 -27.38767 -26.29586 -25.64455 -24.05534 -23.21477 -22.43438 -20.45179 -19.86450 -19.65385 -19.10018 -18.40261 -17.69352 -17.62039 -17.38731 -16.68605 -16.46577 -16.31384 -16.16054 -15.80164 -15.60191 -15.52370 -15.41525 -15.19636 -14.65429 -14.40500 -14.25662 -13.94506 -13.55263 -13.20315 -13.06903 -12.97123 -12.60085 -12.47662 -12.41472 -12.20830 -12.01588 -11.95241 -11.31289 -10.80765 -10.41361 -10.33053 -9.85106 -9.43291 -8.96789 -8.47204 -6.14193 -1.19106 -0.65822 0.15556 0.67102 0.78067 1.34821 1.45398 1.50272 1.58383 2.15584 2.28293 2.66535 2.74253 2.84762 2.98942 3.10313 3.13936 3.31383 3.38018 3.50135 3.66558 3.88890 4.03497 4.20364 4.27771 4.35851 4.59108 4.66277 4.68234 4.71475 4.85806 4.96987 5.08846 5.11056 5.22345 5.38486 5.56895 5.65021 5.75690 5.83130 5.98289 6.18808 6.96405 6.98146 7.76551 8.73560 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.012530 B = 0.004348 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.170520 B = 6438.058740 C = 7642.390075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.018 4.018 3 Si 1.014 2.986 4 H -0.256 1.256 5 H -0.278 1.278 6 H -0.256 1.256 7 C -0.414 4.414 8 H 0.106 0.894 9 O -0.205 6.205 10 C 0.149 3.851 11 C -0.247 4.247 12 C -0.045 4.045 13 C -0.185 4.185 14 C -0.038 4.038 15 C -0.166 4.166 16 C 0.297 3.703 17 N -0.535 5.535 18 C 0.315 3.685 19 N -0.538 5.538 20 C 0.135 3.865 21 C 0.044 3.956 22 F -0.125 7.125 23 C 0.123 3.877 24 F -0.117 7.117 25 C -0.120 4.120 26 C -0.030 4.030 27 C -0.159 4.159 28 H 0.270 0.730 29 H 0.123 0.877 30 H 0.152 0.848 31 H 0.164 0.836 32 H 0.153 0.847 33 H 0.214 0.786 34 H 0.203 0.797 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.729 -14.763 -4.471 16.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.217 4.217 3 Si 0.833 3.167 4 H -0.180 1.180 5 H -0.203 1.203 6 H -0.180 1.180 7 C -0.490 4.490 8 H 0.124 0.876 9 O -0.109 6.109 10 C 0.095 3.905 11 C -0.267 4.267 12 C -0.063 4.063 13 C -0.204 4.204 14 C -0.057 4.057 15 C -0.169 4.169 16 C 0.141 3.859 17 N -0.248 5.248 18 C 0.027 3.973 19 N -0.254 5.254 20 C 0.005 3.995 21 C 0.022 3.978 22 F -0.103 7.103 23 C 0.100 3.900 24 F -0.096 7.096 25 C -0.138 4.138 26 C -0.050 4.050 27 C -0.163 4.163 28 H 0.079 0.921 29 H 0.141 0.859 30 H 0.170 0.830 31 H 0.182 0.818 32 H 0.171 0.829 33 H 0.231 0.769 34 H 0.220 0.780 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 5.413 -14.143 -3.938 15.647 hybrid contribution -0.439 1.047 -0.380 1.197 sum 4.974 -13.096 -4.318 14.660 Atomic orbital electron populations 1.70206 1.08075 1.28627 1.47720 1.26535 0.96664 1.02700 0.95774 0.84710 0.77421 0.74494 0.80037 1.18030 1.20300 1.17972 1.21824 0.92585 0.81386 1.53159 0.87640 1.83989 1.35515 1.12307 1.79048 1.19857 0.91580 0.86961 0.92108 1.21294 0.92915 1.00831 1.11624 1.21403 1.00491 0.91252 0.93201 1.21128 0.93940 0.98338 1.06962 1.21145 0.94086 0.95350 0.95156 1.17693 0.88643 0.92362 1.18157 1.20674 0.93936 0.84630 0.86680 1.68645 1.04331 1.19917 1.31947 1.25285 0.89640 0.90254 0.92112 1.68714 1.39611 1.11775 1.05252 1.18762 0.90428 0.95994 0.94277 1.17009 0.78146 1.05062 0.97549 1.91491 1.29410 1.94868 1.94578 1.17542 0.92669 0.94524 0.85274 1.91568 1.87789 1.76493 1.53704 1.21239 0.90945 1.01438 1.00197 1.21294 1.01699 0.91394 0.90596 1.19481 0.93734 1.03697 0.99418 0.92124 0.85943 0.83030 0.81836 0.82950 0.76931 0.77994 0.80319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.04 13.67 21.62 0.30 -54.74 16 2 C -0.02 -0.98 5.49 84.84 0.47 -0.51 16 3 Si 1.01 41.60 29.55 68.60 2.03 43.62 16 4 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 5 H -0.28 -11.25 7.11 99.48 0.71 -10.55 16 6 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 7 C -0.41 -22.79 9.44 67.93 0.64 -22.15 16 8 H 0.11 5.22 5.30 -2.91 -0.02 5.20 16 9 O -0.20 -11.55 8.99 -20.57 -0.19 -11.74 16 10 C 0.15 6.70 6.65 22.88 0.15 6.85 16 11 C -0.25 -9.29 9.12 22.36 0.20 -9.09 16 12 C -0.05 -1.20 10.03 22.30 0.22 -0.98 16 13 C -0.19 -4.13 10.03 22.26 0.22 -3.91 16 14 C -0.04 -1.01 7.87 22.51 0.18 -0.83 16 15 C -0.17 -6.24 5.10 -19.95 -0.10 -6.35 16 16 C 0.30 11.95 5.95 42.37 0.25 12.21 16 17 N -0.53 -24.08 10.11 -188.19 -1.90 -25.98 16 18 C 0.32 12.84 12.22 180.92 2.21 15.05 16 19 N -0.54 -21.70 10.34 -193.81 -2.00 -23.70 16 20 C 0.13 4.96 6.62 40.19 0.27 5.23 16 21 C 0.04 1.42 7.31 22.41 0.16 1.59 16 22 F -0.12 -4.34 17.04 44.97 0.77 -3.57 16 23 C 0.12 3.07 7.24 22.20 0.16 3.23 16 24 F -0.12 -2.77 17.13 44.97 0.77 -2.00 16 25 C -0.12 -2.25 9.93 22.12 0.22 -2.03 16 26 C -0.03 -0.70 8.91 22.24 0.20 -0.50 16 27 C -0.16 -5.40 5.74 -21.14 -0.12 -5.52 16 28 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 29 H 0.12 4.74 5.72 -2.91 -0.02 4.73 16 30 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 31 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 32 H 0.15 2.94 7.79 -2.91 -0.02 2.91 16 33 H 0.21 7.40 8.06 -2.91 -0.02 7.37 16 34 H 0.20 1.85 8.06 -2.91 -0.02 1.82 16 35 H 0.18 3.36 6.11 -2.91 -0.02 3.34 16 Total: -1.00 -75.94 321.27 6.29 -69.65 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 1.18 Total: 16.17 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 5.34 Total: -7.71 kcal Atomic # 7 Polarization: -100.81 SS G_CDS: -3.61 Total: -104.42 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.19 Total: -11.74 kcal Atomic # 9 Polarization: -7.11 SS G_CDS: 1.54 Total: -5.57 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.62 kcal Total: -75.94 6.29 -69.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243583591.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.502 kcal (2) G-P(sol) polarization free energy of solvation -75.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds