Wall clock time and date at job start Tue Mar 31 2020 15:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31534 * 1 3 3 Si 1.86798 * 120.00214 * 2 1 4 4 H 1.48495 * 109.47099 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46782 * 299.99795 * 3 2 1 6 6 H 1.48496 * 109.47334 * 59.99689 * 3 2 1 7 7 C 1.38687 * 119.99226 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99257 * 180.02562 * 7 2 1 9 9 O 1.34796 * 120.00378 * 0.02562 * 7 2 1 10 10 C 1.35580 * 116.99854 * 175.59196 * 9 7 2 11 11 C 1.38797 * 120.15394 * 353.92267 * 10 9 7 12 12 C 1.38066 * 120.06133 * 180.26060 * 11 10 9 13 13 C 1.38526 * 120.38183 * 359.74425 * 12 11 10 14 14 C 1.37892 * 120.31004 * 359.97438 * 13 12 11 15 15 C 1.39549 * 119.92198 * 0.02562 * 14 13 12 16 16 C 1.47808 * 120.18344 * 179.97438 * 15 14 13 17 17 N 1.32916 * 120.93013 * 100.94216 * 16 15 14 18 18 C 1.32216 * 121.47684 * 179.97438 * 17 16 15 19 19 N 1.31260 * 123.00084 * 359.97300 * 18 17 16 20 20 C 1.34034 * 120.48950 * 0.02715 * 19 18 17 21 21 C 1.40074 * 121.96801 * 179.97438 * 20 19 18 22 22 C 1.36590 * 119.62199 * 180.02562 * 21 20 19 23 23 F 1.35099 * 119.48178 * 179.97438 * 22 21 20 24 24 C 1.39409 * 121.02599 * 0.02562 * 22 21 20 25 25 C 1.36569 * 120.85996 * 0.02562 * 24 22 21 26 26 F 1.35098 * 120.26217 * 180.02562 * 25 24 22 27 27 C 1.40198 * 119.46982 * 359.97438 * 25 24 22 28 28 H 0.97004 * 119.99470 * 0.02562 * 1 2 3 29 29 H 1.07993 * 119.96883 * 0.02562 * 11 10 9 30 30 H 1.08005 * 119.80543 * 179.76860 * 12 11 10 31 31 H 1.08006 * 119.84912 * 180.02562 * 13 12 11 32 32 H 1.07999 * 120.03797 * 180.02562 * 14 13 12 33 33 H 1.07998 * 118.49788 * 180.02562 * 18 17 16 34 34 H 1.07997 * 120.18732 * 359.75062 * 21 20 19 35 35 H 1.08006 * 119.57010 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8907 2.3963 -1.2125 6 1 1.8907 2.3964 1.2124 7 6 2.0086 -1.2012 0.0005 8 1 3.0886 -1.2012 0.0010 9 8 1.3346 -2.3685 0.0005 10 6 2.0699 -3.5038 -0.0918 11 6 3.4391 -3.4321 -0.3073 12 6 4.1852 -4.5895 -0.4064 13 6 3.5763 -5.8280 -0.2866 14 6 2.2180 -5.9173 -0.0665 15 6 1.4516 -4.7556 0.0358 16 6 -0.0050 -4.8446 0.2711 17 7 -0.5143 -4.6500 1.4832 18 6 -1.8154 -4.7264 1.7058 19 7 -2.6875 -4.9952 0.7624 20 6 -2.2824 -5.2090 -0.4973 21 6 -3.1859 -5.4986 -1.5278 22 6 -2.7204 -5.7087 -2.7946 23 9 -3.5943 -5.9884 -3.7862 24 6 -1.3576 -5.6401 -3.0799 25 6 -0.4496 -5.3610 -2.0987 26 9 0.8683 -5.2970 -2.3888 27 6 -0.8963 -5.1405 -0.7882 28 1 -0.4849 0.8401 -0.0004 29 1 3.9207 -2.4701 -0.4014 30 1 5.2498 -4.5290 -0.5779 31 1 4.1683 -6.7280 -0.3651 32 1 1.7479 -6.8851 0.0266 33 1 -2.1771 -4.5593 2.7096 34 1 -4.2441 -5.5598 -1.3209 35 1 -1.0153 -5.8099 -4.0902 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243585339.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:27 Heat of formation + Delta-G solvation = -30.514407 kcal Electronic energy + Delta-G solvation = -27308.948626 eV Core-core repulsion = 23101.611425 eV Total energy + Delta-G solvation = -4207.337202 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.25541 -50.23713 -42.42395 -40.74354 -38.52907 -38.16386 -35.51268 -34.33487 -32.85592 -31.56577 -31.09799 -30.47725 -27.43479 -26.32121 -25.61653 -24.14122 -23.25227 -22.47521 -20.50546 -19.90554 -19.51790 -19.04205 -18.47071 -17.80503 -17.38138 -17.20191 -16.87030 -16.60545 -16.37378 -16.33171 -15.79901 -15.64607 -15.60988 -15.52092 -15.22387 -14.56387 -14.45271 -14.25740 -14.07828 -13.59818 -13.36720 -13.03100 -12.90068 -12.63677 -12.50686 -12.45750 -12.13850 -12.09935 -11.89957 -11.35551 -10.85966 -10.50983 -10.40192 -9.76054 -9.56057 -9.04740 -8.51329 -6.18762 -1.19168 -0.68322 0.29807 0.46591 0.70505 1.32552 1.40853 1.49033 1.50606 2.13134 2.43056 2.64654 2.73760 2.78682 2.90828 3.02852 3.09922 3.21941 3.34425 3.45452 3.62027 3.95557 4.09240 4.11077 4.28493 4.37245 4.43437 4.55363 4.56565 4.60860 4.73349 4.94250 5.06117 5.08129 5.16526 5.37035 5.51883 5.59771 5.70075 5.76960 5.94904 6.14058 6.90819 6.93269 7.71242 8.71022 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.010922 B = 0.005160 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.961131 B = 5424.881365 C = 6335.784504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.019 4.019 3 Si 1.016 2.984 4 H -0.247 1.247 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.411 4.411 8 H 0.105 0.895 9 O -0.219 6.219 10 C 0.146 3.854 11 C -0.242 4.242 12 C -0.052 4.052 13 C -0.184 4.184 14 C -0.042 4.042 15 C -0.158 4.158 16 C 0.308 3.692 17 N -0.543 5.543 18 C 0.316 3.684 19 N -0.524 5.524 20 C 0.196 3.804 21 C -0.155 4.155 22 C 0.182 3.818 23 F -0.114 7.114 24 C -0.191 4.191 25 C 0.179 3.821 26 F -0.112 7.112 27 C -0.221 4.221 28 H 0.271 0.729 29 H 0.125 0.875 30 H 0.154 0.846 31 H 0.160 0.840 32 H 0.137 0.863 33 H 0.231 0.769 34 H 0.179 0.821 35 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.315 -12.827 -4.531 13.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.217 4.217 3 Si 0.836 3.164 4 H -0.171 1.171 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.487 4.487 8 H 0.122 0.878 9 O -0.124 6.124 10 C 0.093 3.907 11 C -0.262 4.262 12 C -0.070 4.070 13 C -0.202 4.202 14 C -0.061 4.061 15 C -0.160 4.160 16 C 0.151 3.849 17 N -0.256 5.256 18 C 0.028 3.972 19 N -0.239 5.239 20 C 0.067 3.933 21 C -0.175 4.175 22 C 0.159 3.841 23 F -0.092 7.092 24 C -0.211 4.211 25 C 0.157 3.843 26 F -0.089 7.089 27 C -0.227 4.227 28 H 0.080 0.920 29 H 0.143 0.857 30 H 0.171 0.829 31 H 0.177 0.823 32 H 0.155 0.845 33 H 0.247 0.753 34 H 0.196 0.804 35 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -0.590 -12.509 -3.604 13.031 hybrid contribution 0.447 1.084 -0.717 1.374 sum -0.143 -11.425 -4.320 12.216 Atomic orbital electron populations 1.70198 1.08088 1.28587 1.48552 1.26555 0.96747 1.02675 0.95761 0.84557 0.78527 0.74933 0.78419 1.17053 1.19474 1.19616 1.21871 0.92571 0.81191 1.53036 0.87787 1.83912 1.35683 1.12423 1.80418 1.19695 0.91519 0.86496 0.92942 1.21272 0.92839 1.00712 1.11341 1.21340 1.00496 0.91112 0.94033 1.21058 0.93716 0.98467 1.06960 1.20931 0.94441 0.95068 0.95639 1.17620 0.89487 0.92351 1.16518 1.20478 0.93845 0.83037 0.87514 1.68651 1.16895 1.16406 1.23692 1.25645 0.83912 0.87383 1.00269 1.68852 1.38319 1.16784 0.99906 1.18590 0.88916 0.93072 0.92693 1.20719 1.01994 1.05286 0.89518 1.16710 0.86174 0.96513 0.84691 1.91587 1.67772 1.90260 1.59554 1.21017 0.91098 1.06928 1.02017 1.16879 0.78933 0.97018 0.91514 1.91621 1.31115 1.92701 1.93511 1.19812 0.96830 1.10461 0.95551 0.92039 0.85692 0.82875 0.82289 0.84541 0.75298 0.80385 0.79558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.29 13.67 21.62 0.30 -56.00 16 2 C -0.02 -1.09 5.49 84.84 0.47 -0.63 16 3 Si 1.02 42.66 29.55 68.60 2.03 44.68 16 4 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 7 C -0.41 -23.53 9.45 67.93 0.64 -22.89 16 8 H 0.10 5.43 5.29 -2.91 -0.02 5.42 16 9 O -0.22 -12.96 9.21 -20.52 -0.19 -13.15 16 10 C 0.15 7.14 6.66 22.88 0.15 7.29 16 11 C -0.24 -10.08 9.13 22.36 0.20 -9.88 16 12 C -0.05 -1.62 10.03 22.30 0.22 -1.40 16 13 C -0.18 -5.24 10.03 22.26 0.22 -5.02 16 14 C -0.04 -1.40 8.68 22.50 0.20 -1.20 16 15 C -0.16 -6.70 3.69 -19.95 -0.07 -6.77 16 16 C 0.31 13.28 5.81 42.33 0.25 13.53 16 17 N -0.54 -23.33 10.38 -188.26 -1.95 -25.28 16 18 C 0.32 11.48 12.22 180.92 2.21 13.69 16 19 N -0.52 -18.75 10.44 -193.96 -2.03 -20.77 16 20 C 0.20 6.92 6.61 40.13 0.27 7.18 16 21 C -0.16 -4.30 9.97 22.33 0.22 -4.07 16 22 C 0.18 4.53 7.23 22.17 0.16 4.69 16 23 F -0.11 -2.49 17.24 44.97 0.78 -1.71 16 24 C -0.19 -4.95 9.91 22.16 0.22 -4.73 16 25 C 0.18 6.02 7.21 22.36 0.16 6.18 16 26 F -0.11 -3.95 14.04 44.97 0.63 -3.32 16 27 C -0.22 -8.52 5.77 -21.10 -0.12 -8.64 16 28 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 29 H 0.13 5.25 5.71 -2.91 -0.02 5.24 16 30 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 31 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 32 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 33 H 0.23 6.30 8.06 -2.91 -0.02 6.28 16 34 H 0.18 4.01 8.06 -2.91 -0.02 3.99 16 35 H 0.19 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -74.23 321.39 6.14 -68.09 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 1.18 Total: 20.14 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: 5.40 Total: -12.68 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -3.68 Total: -102.05 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.19 Total: -13.15 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 1.41 Total: -5.03 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -74.23 6.14 -68.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585339.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.575 kcal (2) G-P(sol) polarization free energy of solvation -74.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds