Wall clock time and date at job start Tue Mar 31 2020 15:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31541 * 1 3 3 Si 1.86797 * 120.00407 * 2 1 4 4 H 1.48500 * 109.47399 * 240.00423 * 3 2 1 5 5 H 1.48504 * 109.47146 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47178 * 119.99968 * 3 2 1 7 7 C 1.38681 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99622 * 179.97438 * 7 2 1 9 9 O 1.34802 * 119.99938 * 0.02562 * 7 2 1 10 10 C 1.35616 * 116.99936 * 185.05985 * 9 7 2 11 11 C 1.38777 * 120.14308 * 354.41075 * 10 9 7 12 12 C 1.38090 * 120.05208 * 180.02562 * 11 10 9 13 13 C 1.38480 * 120.34949 * 359.97438 * 12 11 10 14 14 C 1.37947 * 120.28977 * 359.95819 * 13 12 11 15 15 C 1.39401 * 119.93712 * 0.06671 * 14 13 12 16 16 C 1.48104 * 120.17138 * 180.23084 * 15 14 13 17 17 C 1.40734 * 119.77135 * 359.72185 * 16 15 14 18 18 N 1.31143 * 120.57284 * 179.97438 * 17 16 15 19 19 C 1.33899 * 119.88252 * 0.02562 * 18 17 16 20 20 C 1.40490 * 120.89632 * 179.97438 * 19 18 17 21 21 C 1.36260 * 119.77282 * 180.02562 * 20 19 18 22 22 F 1.35101 * 119.56059 * 179.97438 * 21 20 19 23 23 C 1.39871 * 120.88696 * 359.97438 * 21 20 19 24 24 F 1.35100 * 119.56832 * 179.97438 * 23 21 20 25 25 C 1.36226 * 120.86339 * 0.02562 * 23 21 20 26 26 C 1.40613 * 119.74387 * 0.02562 * 25 23 21 27 27 N 1.32257 * 119.77067 * 179.44666 * 16 15 14 28 28 H 0.96999 * 119.99562 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.97325 * 0.02562 * 11 10 9 30 30 H 1.08006 * 119.82444 * 179.97438 * 12 11 10 31 31 H 1.08003 * 119.85816 * 179.97438 * 13 12 11 32 32 H 1.08004 * 120.03312 * 180.02562 * 14 13 12 33 33 H 1.07993 * 119.71376 * 0.02562 * 17 16 15 34 34 H 1.07995 * 120.11138 * 359.97438 * 20 19 18 35 35 H 1.08006 * 120.13313 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2495 1.6176 0.0000 4 1 3.1032 1.6964 -1.2125 5 1 1.2846 2.7465 0.0006 6 1 3.1032 1.6963 1.2125 7 6 2.0088 -1.2010 0.0005 8 1 3.0888 -1.2010 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0692 -3.5034 0.1076 11 6 3.4554 -3.4403 0.0943 12 6 4.2015 -4.5973 0.2030 13 6 3.5739 -5.8255 0.3262 14 6 2.1967 -5.9047 0.3425 15 6 1.4319 -4.7444 0.2331 16 6 -0.0469 -4.8228 0.2551 17 6 -0.6785 -6.0742 0.3810 18 7 -1.9868 -6.1618 0.4027 19 6 -2.7314 -5.0534 0.3039 20 6 -4.1345 -5.1226 0.3243 21 6 -4.8699 -3.9801 0.2216 22 9 -6.2188 -4.0517 0.2411 23 6 -4.2469 -2.7340 0.0963 24 9 -5.0020 -1.6183 -0.0041 25 6 -2.8888 -2.6309 0.0731 26 6 -2.0993 -3.7900 0.1758 27 7 -0.7647 -3.7159 0.1617 28 1 -0.4849 0.8401 0.0004 29 1 3.9512 -2.4856 -0.0011 30 1 5.2801 -4.5439 0.1918 31 1 4.1651 -6.7254 0.4103 32 1 1.7116 -6.8648 0.4392 33 1 -0.0806 -6.9699 0.4612 34 1 -4.6284 -6.0782 0.4201 35 1 -2.4201 -1.6627 -0.0237 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243585433.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:38 Heat of formation + Delta-G solvation = -9.166205 kcal Electronic energy + Delta-G solvation = -26620.213588 eV Core-core repulsion = 22413.802114 eV Total energy + Delta-G solvation = -4206.411474 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.38401 -48.44687 -41.03434 -39.16494 -36.97747 -36.34086 -34.45871 -32.51069 -31.72881 -30.30818 -29.27207 -28.51744 -25.68868 -24.76820 -24.13048 -22.60461 -21.71808 -21.12523 -19.05666 -18.20609 -18.08748 -17.69270 -16.90593 -16.26009 -16.24519 -15.72255 -15.28697 -14.87730 -14.65267 -14.61515 -14.43443 -14.37023 -13.94424 -13.92126 -13.70748 -13.43359 -13.07947 -12.66003 -12.36008 -11.84503 -11.73659 -11.62084 -11.30275 -11.17186 -11.13491 -10.99784 -10.90385 -10.83768 -10.58610 -9.60603 -9.06692 -8.95548 -8.57638 -8.49405 -7.97109 -7.24261 -6.63666 -4.15123 0.25569 0.51670 1.77557 2.20326 2.24464 2.83273 3.03581 3.05011 3.07333 3.73371 3.81372 4.07932 4.14165 4.24230 4.46289 4.54626 4.62568 4.88913 4.93282 5.03800 5.11536 5.29824 5.41649 5.51249 5.59749 5.64663 5.80709 5.89702 5.93309 6.07146 6.19222 6.44276 6.50028 6.62245 6.76597 6.89735 7.01662 7.15929 7.18600 7.56169 7.62925 7.78574 8.22837 8.79407 9.51012 10.50377 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.010028 B = 0.005175 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.373411 B = 5409.694156 C = 8187.168472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.047 3.953 3 Si 0.940 3.060 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.393 4.393 8 H 0.093 0.907 9 O -0.114 6.114 10 C 0.174 3.826 11 C -0.233 4.233 12 C -0.055 4.055 13 C -0.221 4.221 14 C -0.042 4.042 15 C -0.155 4.155 16 C 0.172 3.828 17 C 0.088 3.912 18 N -0.429 5.429 19 C 0.057 3.943 20 C -0.092 4.092 21 C 0.074 3.926 22 F -0.129 7.129 23 C 0.076 3.924 24 F -0.126 7.126 25 C -0.074 4.074 26 C 0.114 3.886 27 N -0.378 5.378 28 H 0.272 0.728 29 H 0.131 0.869 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.173 0.827 34 H 0.154 0.846 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.391 -8.158 0.574 8.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.161 4.161 3 Si 0.764 3.236 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.010 6.010 10 C 0.114 3.886 11 C -0.252 4.252 12 C -0.074 4.074 13 C -0.240 4.240 14 C -0.061 4.061 15 C -0.159 4.159 16 C 0.021 3.979 17 C -0.090 4.090 18 N -0.142 5.142 19 C -0.067 4.067 20 C -0.112 4.112 21 C 0.052 3.948 22 F -0.108 7.108 23 C 0.054 3.946 24 F -0.104 7.104 25 C -0.094 4.094 26 C -0.013 4.013 27 N -0.093 5.093 28 H 0.082 0.918 29 H 0.148 0.852 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.136 0.864 33 H 0.190 0.810 34 H 0.172 0.828 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -2.219 -7.717 0.542 8.048 hybrid contribution 0.256 1.025 -0.020 1.057 sum -1.963 -6.692 0.522 6.994 Atomic orbital electron populations 1.70025 1.05978 1.27975 1.42161 1.25307 0.95843 0.98846 0.96086 0.85796 0.78890 0.79602 0.79315 1.19383 1.20111 1.19388 1.21519 0.92027 0.81260 1.52137 0.88938 1.84194 1.33343 1.10814 1.72670 1.19309 0.89903 0.87546 0.91821 1.21176 0.93454 0.99330 1.11255 1.20911 0.98750 0.92337 0.95406 1.20482 0.93892 0.97226 1.12448 1.20708 0.93697 0.95632 0.96075 1.17370 0.88150 0.92094 1.18239 1.21001 0.94654 0.89027 0.93188 1.24010 0.90887 0.98602 0.95465 1.68533 1.06383 1.29252 1.10031 1.19139 0.93793 0.90455 1.03266 1.20378 0.91662 0.97858 1.01305 1.17210 0.77574 0.92963 1.07009 1.91521 1.28073 1.97026 1.94134 1.17243 0.89221 0.81495 1.06617 1.91539 1.75578 1.49657 1.93674 1.21019 0.89953 1.01256 0.97204 1.19322 0.91553 0.92131 0.98256 1.69328 1.03073 1.28469 1.08429 0.91752 0.85152 0.87133 0.87005 0.86366 0.80993 0.82812 0.80553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.83 13.67 55.48 0.76 -21.07 16 2 C 0.05 1.19 5.49 -17.51 -0.10 1.09 16 3 Si 0.94 19.00 29.55 -169.99 -5.02 13.98 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.39 -10.02 9.49 30.90 0.29 -9.72 16 8 H 0.09 2.17 5.21 -52.49 -0.27 1.89 16 9 O -0.11 -2.94 7.60 0.54 0.00 -2.93 16 10 C 0.17 3.87 6.65 -38.70 -0.26 3.62 16 11 C -0.23 -4.56 9.16 -39.44 -0.36 -4.92 16 12 C -0.06 -0.89 10.03 -39.55 -0.40 -1.28 16 13 C -0.22 -3.29 10.03 -39.60 -0.40 -3.68 16 14 C -0.04 -0.64 9.42 -39.26 -0.37 -1.01 16 15 C -0.15 -3.01 5.89 -104.73 -0.62 -3.63 16 16 C 0.17 3.35 6.74 -82.69 -0.56 2.79 16 17 C 0.09 1.41 10.59 -16.90 -0.18 1.23 16 18 N -0.43 -7.15 10.44 -10.54 -0.11 -7.26 16 19 C 0.06 0.99 6.59 -84.74 -0.56 0.43 16 20 C -0.09 -1.36 9.93 -39.45 -0.39 -1.75 16 21 C 0.07 1.14 7.24 -39.68 -0.29 0.85 16 22 F -0.13 -1.90 17.14 2.25 0.04 -1.86 16 23 C 0.08 1.28 7.24 -39.69 -0.29 1.00 16 24 F -0.13 -2.13 17.14 2.25 0.04 -2.09 16 25 C -0.07 -1.41 9.94 -39.41 -0.39 -1.80 16 26 C 0.11 2.27 6.59 -84.79 -0.56 1.71 16 27 N -0.38 -8.37 8.26 -7.39 -0.06 -8.43 16 28 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 29 H 0.13 2.53 5.64 -52.49 -0.30 2.23 16 30 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 31 H 0.11 1.33 8.06 -52.48 -0.42 0.90 16 32 H 0.12 1.38 6.17 -52.48 -0.32 1.06 16 33 H 0.17 2.03 6.16 -52.49 -0.32 1.71 16 34 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 35 H 0.18 3.69 8.06 -52.48 -0.42 3.27 16 LS Contribution 319.89 15.07 4.82 4.82 Total: -1.00 -28.01 319.89 -6.99 -35.00 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -2.04 Total: 4.93 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -5.41 Total: -15.08 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.59 Total: -36.76 kcal Atomic # 8 Polarization: -2.94 SS G_CDS: 0.00 Total: -2.93 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.08 Total: -3.95 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.02 Total: 13.98 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.01 -6.99 -35.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585433.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.834 kcal (2) G-P(sol) polarization free energy of solvation -28.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds