Wall clock time and date at job start Tue Mar 31 2020 15:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31549 * 1 3 3 Si 1.86800 * 119.99791 * 2 1 4 4 H 1.48496 * 109.46947 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47305 * 300.00176 * 3 2 1 6 6 H 1.48501 * 109.47112 * 59.99998 * 3 2 1 7 7 C 1.38670 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99852 * 180.02562 * 7 2 1 9 9 O 1.34804 * 120.00180 * 0.02562 * 7 2 1 10 10 C 1.35654 * 117.00434 * 185.05395 * 9 7 2 11 11 C 1.39048 * 119.94098 * 354.45278 * 10 9 7 12 12 C 1.37782 * 120.06241 * 179.97438 * 11 10 9 13 13 C 1.39536 * 119.93760 * 359.97438 * 12 11 10 14 14 C 1.48144 * 120.05462 * 180.02562 * 13 12 11 15 15 C 1.40714 * 119.76967 * 180.02562 * 14 13 12 16 16 N 1.31156 * 120.57758 * 179.97438 * 15 14 13 17 17 C 1.33892 * 119.88262 * 359.97438 * 16 15 14 18 18 C 1.40478 * 120.90939 * 179.97438 * 17 16 15 19 19 C 1.36268 * 119.77276 * 179.97438 * 18 17 16 20 20 F 1.35103 * 119.55407 * 180.02562 * 19 18 17 21 21 C 1.39862 * 120.88998 * 0.04803 * 19 18 17 22 22 F 1.35102 * 119.56861 * 179.97438 * 21 19 18 23 23 C 1.36229 * 120.86274 * 359.97438 * 21 19 18 24 24 C 1.40610 * 119.74205 * 359.97438 * 23 21 19 25 25 N 1.32253 * 119.77300 * 359.97438 * 14 13 12 26 26 C 1.39530 * 119.88721 * 0.27821 * 13 12 11 27 27 C 1.37787 * 119.93841 * 359.44419 * 26 13 12 28 28 H 0.96995 * 119.99881 * 359.97438 * 1 2 3 29 29 H 1.08004 * 119.96577 * 359.95265 * 11 10 9 30 30 H 1.07996 * 120.02562 * 180.02562 * 12 11 10 31 31 H 1.07996 * 119.71475 * 359.71397 * 15 14 13 32 32 H 1.08002 * 120.11432 * 359.97438 * 18 17 16 33 33 H 1.08000 * 120.12709 * 179.97438 * 23 21 19 34 34 H 1.07997 * 120.03576 * 179.72153 * 26 13 12 35 35 H 1.07997 * 119.97343 * 180.27441 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 3.7094 1.3464 0.0006 5 1 1.8907 2.3965 -1.2124 6 1 1.8906 2.3965 1.2125 7 6 2.0088 -1.2009 0.0005 8 1 3.0888 -1.2009 0.0010 9 8 1.3349 -2.3684 0.0005 10 6 2.0695 -3.5037 0.1075 11 6 3.4583 -3.4355 0.0945 12 6 4.2069 -4.5870 0.2035 13 6 3.5702 -5.8224 0.3277 14 6 4.3726 -7.0621 0.4457 15 6 3.7243 -8.3048 0.5701 16 7 4.4191 -9.4123 0.6751 17 6 5.7571 -9.3640 0.6637 18 6 6.5225 -10.5366 0.7753 19 6 7.8830 -10.4606 0.7605 20 9 8.6148 -11.5913 0.8676 21 6 8.5320 -9.2279 0.6365 22 9 9.8822 -9.1835 0.6254 23 6 7.8204 -8.0714 0.5267 24 6 6.4150 -8.1135 0.5373 25 7 5.6933 -6.9934 0.4324 26 6 2.1765 -5.8887 0.3352 27 6 1.4326 -4.7335 0.2316 28 1 -0.4850 0.8400 0.0004 29 1 3.9505 -2.4790 -0.0016 30 1 5.2855 -4.5333 0.1938 31 1 2.6453 -8.3467 0.5835 32 1 6.0344 -11.4951 0.8724 33 1 8.3338 -7.1260 0.4319 34 1 1.6812 -6.8440 0.4267 35 1 0.3539 -4.7837 0.2419 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243588439.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:40 Heat of formation + Delta-G solvation = -35.302898 kcal Electronic energy + Delta-G solvation = -25131.638514 eV Core-core repulsion = 20924.093668 eV Total energy + Delta-G solvation = -4207.544846 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.72664 -49.79723 -42.55702 -40.80470 -38.86057 -37.70554 -35.98762 -34.38396 -32.59707 -32.09127 -31.56351 -29.68945 -27.48837 -26.33245 -25.36703 -24.18278 -23.29414 -22.69049 -20.56658 -19.89694 -19.48486 -19.18162 -18.75679 -17.63242 -17.61625 -17.21410 -16.80582 -16.30202 -16.20473 -16.10187 -16.09222 -15.77802 -15.58554 -15.40272 -15.06879 -14.80012 -14.59725 -14.12517 -13.95607 -13.58831 -13.48170 -13.03767 -12.92975 -12.88437 -12.75017 -12.68465 -12.36554 -12.21761 -12.10294 -11.25082 -10.88198 -10.28740 -10.12554 -9.91781 -9.87064 -8.78774 -8.52344 -6.17920 -1.23318 -0.91497 0.32217 0.59598 0.76446 1.35493 1.37220 1.47711 1.54497 2.15349 2.33083 2.60625 2.62794 2.78593 2.90113 2.98249 3.17806 3.19570 3.41177 3.47147 3.75811 3.82631 4.02284 4.11104 4.14780 4.21017 4.38986 4.47587 4.58291 4.60533 4.74071 4.87601 5.05528 5.09774 5.23102 5.33537 5.50650 5.59053 5.65314 5.97810 6.02728 6.13990 6.55495 6.92598 7.68130 8.69514 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.025506 B = 0.002273 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.502775 B =12316.465781 C =13398.782218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.017 4.017 3 Si 1.016 2.984 4 H -0.252 1.252 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.414 4.414 8 H 0.105 0.895 9 O -0.215 6.215 10 C 0.138 3.862 11 C -0.251 4.251 12 C -0.019 4.019 13 C -0.155 4.155 14 C 0.185 3.815 15 C 0.100 3.900 16 N -0.422 5.422 17 C 0.058 3.942 18 C -0.073 4.073 19 C 0.082 3.918 20 F -0.122 7.122 21 C 0.097 3.903 22 F -0.123 7.123 23 C -0.095 4.095 24 C 0.095 3.905 25 N -0.456 5.456 26 C -0.023 4.023 27 C -0.201 4.201 28 H 0.275 0.725 29 H 0.123 0.877 30 H 0.134 0.866 31 H 0.215 0.785 32 H 0.183 0.817 33 H 0.173 0.827 34 H 0.174 0.826 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.579 -18.821 1.560 22.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.216 4.216 3 Si 0.836 3.164 4 H -0.175 1.175 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.489 4.489 8 H 0.123 0.877 9 O -0.120 6.120 10 C 0.085 3.915 11 C -0.271 4.271 12 C -0.039 4.039 13 C -0.158 4.158 14 C 0.034 3.966 15 C -0.077 4.077 16 N -0.134 5.134 17 C -0.065 4.065 18 C -0.093 4.093 19 C 0.060 3.940 20 F -0.101 7.101 21 C 0.075 3.925 22 F -0.101 7.101 23 C -0.115 4.115 24 C -0.030 4.030 25 N -0.171 5.171 26 C -0.042 4.042 27 C -0.220 4.220 28 H 0.084 0.916 29 H 0.140 0.860 30 H 0.152 0.848 31 H 0.231 0.769 32 H 0.200 0.800 33 H 0.190 0.810 34 H 0.191 0.809 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 12.494 -18.826 1.555 22.648 hybrid contribution 0.613 1.038 -0.060 1.207 sum 13.107 -17.788 1.495 22.145 Atomic orbital electron populations 1.70158 1.07949 1.29056 1.47604 1.26559 0.96809 1.02686 0.95537 0.84554 0.78343 0.74945 0.78596 1.17503 1.19343 1.19366 1.21911 0.92697 0.81202 1.53139 0.87736 1.83913 1.36179 1.12741 1.79131 1.20180 0.91333 0.88197 0.91772 1.21185 0.93211 0.99850 1.12813 1.21044 0.99916 0.90619 0.92272 1.18049 0.92622 0.90277 1.14817 1.21050 0.89524 0.94418 0.91615 1.24579 1.03444 0.86457 0.93225 1.68695 1.05232 1.30383 1.09102 1.19368 0.91505 0.93255 1.02387 1.20679 0.90175 0.99768 0.98680 1.17219 0.89514 0.81273 1.05949 1.91575 1.76957 1.48081 1.93477 1.17257 0.77762 0.92943 1.04550 1.91575 1.27692 1.97108 1.93760 1.20666 0.91321 0.98959 1.00580 1.19340 0.94566 0.89643 0.99477 1.68651 1.06951 1.29053 1.12489 1.21133 0.91334 0.98285 0.93432 1.20439 1.00737 0.89662 1.11177 0.91567 0.85965 0.84790 0.76859 0.79977 0.80968 0.80928 0.85000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.90 13.67 21.62 0.30 -52.60 16 2 C -0.02 -0.90 5.49 84.84 0.47 -0.44 16 3 Si 1.02 40.65 29.55 68.60 2.03 42.68 16 4 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 5 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 6 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 7 C -0.41 -22.58 9.48 67.92 0.64 -21.93 16 8 H 0.11 5.25 5.19 -2.91 -0.02 5.23 16 9 O -0.22 -11.94 9.75 -21.42 -0.21 -12.15 16 10 C 0.14 6.19 6.65 22.66 0.15 6.34 16 11 C -0.25 -10.15 9.15 22.36 0.20 -9.95 16 12 C -0.02 -0.64 9.57 22.47 0.21 -0.43 16 13 C -0.15 -4.47 5.88 -20.02 -0.12 -4.59 16 14 C 0.19 4.68 6.74 42.32 0.29 4.97 16 15 C 0.10 1.99 10.59 85.40 0.90 2.90 16 16 N -0.42 -8.97 10.45 -187.28 -1.96 -10.93 16 17 C 0.06 1.25 6.59 40.27 0.27 1.51 16 18 C -0.07 -1.23 9.93 22.36 0.22 -1.01 16 19 C 0.08 1.45 7.24 22.20 0.16 1.61 16 20 F -0.12 -2.20 17.14 44.97 0.77 -1.43 16 21 C 0.10 1.80 7.24 22.19 0.16 1.96 16 22 F -0.12 -2.38 17.14 44.97 0.77 -1.61 16 23 C -0.10 -1.86 9.94 22.38 0.22 -1.64 16 24 C 0.10 2.23 6.59 40.34 0.27 2.50 16 25 N -0.46 -12.19 9.53 -177.29 -1.69 -13.88 16 26 C -0.02 -0.61 9.41 22.47 0.21 -0.40 16 27 C -0.20 -7.19 9.98 22.36 0.22 -6.96 16 28 H 0.28 14.60 8.31 -92.71 -0.77 13.83 16 29 H 0.12 5.08 5.62 -2.91 -0.02 5.07 16 30 H 0.13 4.13 7.53 -2.91 -0.02 4.11 16 31 H 0.22 2.60 6.16 -2.91 -0.02 2.58 16 32 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 33 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 34 H 0.17 2.77 6.16 -2.91 -0.02 2.75 16 35 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -65.97 322.18 5.69 -60.29 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 1.19 Total: 15.19 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: 4.48 Total: -25.56 kcal Atomic # 7 Polarization: -74.07 SS G_CDS: -3.35 Total: -77.41 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -0.21 Total: -12.15 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 1.54 Total: -3.04 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -65.97 5.69 -60.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243588439.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.985 kcal (2) G-P(sol) polarization free energy of solvation -65.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds