Wall clock time and date at job start Tue Mar 31 2020 15:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31533 * 1 3 3 Si 1.86802 * 119.99787 * 2 1 4 4 H 1.48496 * 109.47318 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47256 * 300.00327 * 3 2 1 6 6 H 1.48506 * 109.47019 * 59.99583 * 3 2 1 7 7 C 1.38685 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99954 * 180.02562 * 7 2 1 9 9 O 1.34804 * 120.00036 * 359.97438 * 7 2 1 10 10 C 1.35622 * 117.00098 * 185.38217 * 9 7 2 11 11 C 1.39088 * 119.92732 * 5.74316 * 10 9 7 12 12 C 1.37720 * 120.07314 * 180.02562 * 11 10 9 13 13 C 1.39682 * 119.92321 * 359.97438 * 12 11 10 14 14 C 1.47858 * 120.06902 * 179.97438 * 13 12 11 15 15 N 1.32850 * 120.93494 * 224.25660 * 14 13 12 16 16 C 1.32232 * 121.48264 * 179.97438 * 15 14 13 17 17 N 1.31237 * 123.00650 * 0.04748 * 16 15 14 18 18 C 1.34004 * 120.49939 * 359.97438 * 17 16 15 19 19 C 1.40318 * 121.98608 * 179.97438 * 18 17 16 20 20 F 1.35101 * 120.23977 * 0.04326 * 19 18 17 21 21 C 1.36697 * 119.51492 * 179.73992 * 19 18 17 22 22 F 1.35102 * 119.51207 * 180.26458 * 21 19 18 23 23 C 1.39446 * 120.96657 * 0.56123 * 21 19 18 24 24 C 1.36327 * 120.92319 * 359.43128 * 23 21 19 25 25 C 1.39955 * 119.57090 * 0.27682 * 24 23 21 26 26 C 1.39676 * 119.86373 * 0.25266 * 13 12 11 27 27 C 1.37723 * 119.92512 * 359.48792 * 26 13 12 28 28 H 0.96998 * 120.00329 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.96891 * 359.97438 * 11 10 9 30 30 H 1.07995 * 120.04073 * 179.97438 * 12 11 10 31 31 H 1.08004 * 118.50063 * 180.02562 * 16 15 14 32 32 H 1.08001 * 119.53686 * 179.70257 * 23 21 19 33 33 H 1.08001 * 120.21116 * 180.29851 * 24 23 21 34 34 H 1.07999 * 120.03761 * 179.74516 * 26 13 12 35 35 H 1.07996 * 119.96630 * 180.24878 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 3.7093 1.3465 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0088 -1.2010 0.0005 8 1 3.0888 -1.2010 0.0010 9 8 1.3348 -2.3685 0.0016 10 6 2.0689 -3.5032 0.1154 11 6 3.4386 -3.4235 0.3440 12 6 4.1870 -4.5738 0.4595 13 6 3.5690 -5.8214 0.3474 14 6 4.3695 -7.0584 0.4704 15 7 4.1962 -8.0707 -0.3723 16 6 4.9064 -9.1816 -0.2726 17 7 5.8201 -9.3655 0.6513 18 6 6.0768 -8.4089 1.5539 19 6 7.0462 -8.5725 2.5551 20 9 7.7570 -9.7187 2.6331 21 6 7.2705 -7.5611 3.4469 22 9 8.2077 -7.7165 4.4076 23 6 6.5419 -6.3738 3.3835 24 6 5.5934 -6.1843 2.4228 25 6 5.3429 -7.1975 1.4903 26 6 2.1942 -5.8980 0.1132 27 6 1.4505 -4.7439 0.0039 28 1 -0.4850 0.8400 0.0004 29 1 3.9159 -2.4586 0.4301 30 1 5.2505 -4.5113 0.6366 31 1 4.7260 -9.9742 -0.9838 32 1 6.7348 -5.5917 4.1029 33 1 5.0392 -5.2583 2.3814 34 1 1.7141 -6.8611 0.0219 35 1 0.3868 -4.8024 -0.1732 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243590289.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:41 Heat of formation + Delta-G solvation = -33.836103 kcal Electronic energy + Delta-G solvation = -25818.898176 eV Core-core repulsion = 21611.416935 eV Total energy + Delta-G solvation = -4207.481241 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.73318 -49.73395 -42.54677 -40.77720 -38.61771 -38.45779 -35.38180 -34.26631 -32.69681 -31.99663 -31.26331 -30.25818 -27.50559 -26.17159 -25.62712 -23.88181 -23.56040 -22.49760 -20.43756 -19.96986 -19.61311 -19.09335 -18.59201 -17.71318 -17.67822 -17.44461 -16.74683 -16.41815 -16.28176 -16.13523 -15.73607 -15.71603 -15.57868 -15.51970 -15.10930 -14.66128 -14.56111 -14.19825 -13.94262 -13.57891 -13.25979 -13.15189 -13.01467 -12.84014 -12.70942 -12.44946 -12.06242 -12.04875 -11.98801 -11.25604 -10.83077 -10.46012 -10.37393 -9.89807 -9.64919 -8.93606 -8.49689 -6.16063 -1.26172 -0.70109 0.08854 0.54950 0.76949 1.40884 1.47294 1.54840 1.58209 2.17621 2.27168 2.61788 2.68448 2.75646 2.95762 3.09350 3.12489 3.27913 3.37524 3.43338 3.61115 3.85697 3.99064 4.04944 4.15120 4.28979 4.48512 4.64380 4.66237 4.69600 4.84490 4.91610 5.04715 5.12146 5.18765 5.34127 5.49156 5.52327 5.61520 5.79382 5.98943 6.01914 6.91425 6.95202 7.70999 8.72401 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.018449 B = 0.002870 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.306518 B = 9752.398608 C =10951.703477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.018 4.018 3 Si 1.017 2.983 4 H -0.245 1.245 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.412 4.412 8 H 0.113 0.887 9 O -0.216 6.216 10 C 0.142 3.858 11 C -0.236 4.236 12 C -0.027 4.027 13 C -0.160 4.160 14 C 0.303 3.697 15 N -0.541 5.541 16 C 0.320 3.680 17 N -0.538 5.538 18 C 0.145 3.855 19 C 0.046 3.954 20 F -0.124 7.124 21 C 0.122 3.878 22 F -0.120 7.120 23 C -0.124 4.124 24 C -0.038 4.038 25 C -0.157 4.157 26 C -0.013 4.013 27 C -0.204 4.204 28 H 0.274 0.726 29 H 0.137 0.863 30 H 0.153 0.847 31 H 0.233 0.767 32 H 0.192 0.808 33 H 0.174 0.826 34 H 0.141 0.859 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.211 -11.472 5.220 18.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.217 4.217 3 Si 0.836 3.164 4 H -0.168 1.168 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.488 4.488 8 H 0.130 0.870 9 O -0.121 6.121 10 C 0.089 3.911 11 C -0.255 4.255 12 C -0.047 4.047 13 C -0.162 4.162 14 C 0.147 3.853 15 N -0.255 5.255 16 C 0.032 3.968 17 N -0.253 5.253 18 C 0.016 3.984 19 C 0.025 3.975 20 F -0.102 7.102 21 C 0.098 3.902 22 F -0.098 7.098 23 C -0.142 4.142 24 C -0.058 4.058 25 C -0.162 4.162 26 C -0.032 4.032 27 C -0.223 4.223 28 H 0.083 0.917 29 H 0.154 0.846 30 H 0.170 0.830 31 H 0.249 0.751 32 H 0.209 0.791 33 H 0.192 0.808 34 H 0.158 0.842 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 12.804 -12.237 4.604 18.299 hybrid contribution 0.351 0.818 0.514 1.028 sum 13.154 -11.419 5.117 18.155 Atomic orbital electron populations 1.70166 1.08158 1.29043 1.47651 1.26592 0.96734 1.02840 0.95527 0.84542 0.78666 0.74836 0.78341 1.16805 1.19871 1.19546 1.21973 0.92886 0.80945 1.52959 0.87016 1.83936 1.36301 1.12852 1.78986 1.20100 0.91705 0.87638 0.91665 1.21179 0.93173 1.00020 1.11143 1.21093 0.99939 0.89498 0.94120 1.17936 0.93170 0.89757 1.15386 1.20471 0.87355 0.91473 0.85980 1.68607 1.28171 1.01938 1.26790 1.25594 0.84863 0.93641 0.92713 1.68767 1.19952 1.30926 1.05694 1.18614 0.94580 0.91073 0.94125 1.17000 0.96924 0.84657 0.98955 1.91509 1.76044 1.47001 1.95662 1.17596 0.90430 0.94754 0.87381 1.91574 1.62018 1.95848 1.60404 1.21211 0.95684 0.96123 1.01220 1.21409 0.95294 0.98500 0.90628 1.19362 1.00303 0.96324 1.00218 1.20851 0.92229 0.97334 0.92826 1.20328 1.00731 0.89706 1.11548 0.91663 0.84562 0.82990 0.75116 0.79064 0.80848 0.84160 0.85994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.09 13.67 21.62 0.30 -51.80 16 2 C -0.02 -0.93 5.49 84.84 0.47 -0.46 16 3 Si 1.02 38.77 29.55 68.60 2.03 40.80 16 4 H -0.25 -8.39 7.11 99.48 0.71 -7.68 16 5 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 6 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.41 -21.35 9.44 67.93 0.64 -20.71 16 8 H 0.11 5.13 5.28 -2.91 -0.02 5.12 16 9 O -0.22 -11.61 9.75 -21.07 -0.21 -11.82 16 10 C 0.14 6.09 6.65 22.68 0.15 6.24 16 11 C -0.24 -8.35 9.11 22.35 0.20 -8.14 16 12 C -0.03 -0.75 7.65 22.50 0.17 -0.58 16 13 C -0.16 -4.54 5.40 -20.03 -0.11 -4.65 16 14 C 0.30 7.95 6.44 42.38 0.27 8.22 16 15 N -0.54 -14.20 10.26 -188.17 -1.93 -16.13 16 16 C 0.32 7.36 12.22 180.92 2.21 9.57 16 17 N -0.54 -14.28 10.34 -193.80 -2.00 -16.28 16 18 C 0.14 3.75 6.62 40.19 0.27 4.01 16 19 C 0.05 1.13 7.31 22.42 0.16 1.29 16 20 F -0.12 -3.36 17.04 44.97 0.77 -2.59 16 21 C 0.12 2.38 7.24 22.20 0.16 2.54 16 22 F -0.12 -2.39 17.13 44.97 0.77 -1.62 16 23 C -0.12 -1.83 9.93 22.12 0.22 -1.61 16 24 C -0.04 -0.68 8.50 22.24 0.19 -0.49 16 25 C -0.16 -3.71 5.72 -21.14 -0.12 -3.83 16 26 C -0.01 -0.40 9.68 22.50 0.22 -0.19 16 27 C -0.20 -7.59 9.97 22.35 0.22 -7.37 16 28 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.14 4.77 5.69 -2.91 -0.02 4.75 16 30 H 0.15 3.10 6.73 -2.91 -0.02 3.08 16 31 H 0.23 3.43 8.06 -2.91 -0.02 3.41 16 32 H 0.19 1.49 8.06 -2.91 -0.02 1.46 16 33 H 0.17 2.76 5.37 -2.91 -0.02 2.74 16 34 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 35 H 0.12 4.51 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -66.00 320.07 6.24 -59.77 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 1.19 Total: 15.83 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: 5.33 Total: -16.16 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -3.64 Total: -84.20 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -0.21 Total: -11.82 kcal Atomic # 9 Polarization: -5.75 SS G_CDS: 1.54 Total: -4.21 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Total: -66.00 6.24 -59.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590289.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.931 kcal (2) G-P(sol) polarization free energy of solvation -66.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds