Wall clock time and date at job start Tue Mar 31 2020 15:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31533 * 1 3 3 Si 1.86798 * 120.00366 * 2 1 4 4 H 1.48496 * 109.47244 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46811 * 299.99906 * 3 2 1 6 6 H 1.48502 * 109.47103 * 60.00085 * 3 2 1 7 7 C 1.38696 * 119.99762 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99842 * 180.02562 * 7 2 1 9 9 O 1.34804 * 119.99629 * 0.02562 * 7 2 1 10 10 C 1.35626 * 116.99677 * 174.94960 * 9 7 2 11 11 C 1.39085 * 119.92960 * 185.27609 * 10 9 7 12 12 C 1.37722 * 120.07109 * 179.75920 * 11 10 9 13 13 C 1.39678 * 119.92664 * 0.53441 * 12 11 10 14 14 C 1.47861 * 120.06734 * 179.74540 * 13 12 11 15 15 N 1.32891 * 120.93054 * 53.50183 * 14 13 12 16 16 C 1.32214 * 121.48267 * 179.97438 * 15 14 13 17 17 N 1.31256 * 122.99879 * 0.02562 * 16 15 14 18 18 C 1.34041 * 120.48497 * 359.97438 * 17 16 15 19 19 C 1.40076 * 121.96738 * 179.97438 * 18 17 16 20 20 C 1.36583 * 119.61950 * 180.02562 * 19 18 17 21 21 F 1.35096 * 119.48444 * 179.97438 * 20 19 18 22 22 C 1.39414 * 121.02898 * 0.02562 * 20 19 18 23 23 C 1.36570 * 120.85927 * 359.97438 * 22 20 19 24 24 F 1.35103 * 120.26430 * 180.02562 * 23 22 20 25 25 C 1.40214 * 119.46903 * 359.72211 * 23 22 20 26 26 C 1.39674 * 119.86017 * 359.71918 * 13 12 11 27 27 C 1.37724 * 119.93201 * 0.02562 * 26 13 12 28 28 H 0.97001 * 119.99246 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.96473 * 359.97438 * 11 10 9 30 30 H 1.07993 * 120.03620 * 180.23008 * 12 11 10 31 31 H 1.07997 * 118.50363 * 179.97438 * 16 15 14 32 32 H 1.08003 * 120.19022 * 0.02562 * 19 18 17 33 33 H 1.07998 * 119.57034 * 179.97438 * 22 20 19 34 34 H 1.07997 * 120.03183 * 179.97438 * 26 13 12 35 35 H 1.07994 * 119.96845 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 3.7094 1.3462 0.0006 5 1 1.8907 2.3963 -1.2126 6 1 1.8907 2.3964 1.2125 7 6 2.0088 -1.2012 0.0005 8 1 3.0887 -1.2012 0.0010 9 8 1.3346 -2.3685 0.0005 10 6 2.0692 -3.5037 -0.1053 11 6 1.4318 -4.7344 -0.2222 12 6 2.1749 -5.8884 -0.3348 13 6 3.5701 -5.8231 -0.3204 14 6 4.3709 -7.0608 -0.4354 15 7 4.1762 -7.9095 -1.4393 16 6 4.8862 -9.0189 -1.5531 17 7 5.8210 -9.3603 -0.6973 18 6 6.1001 -8.5763 0.3535 19 6 7.0906 -8.9106 1.2859 20 6 7.3351 -8.0765 2.3394 21 9 8.2906 -8.4019 3.2374 22 6 6.6132 -6.8951 2.5032 23 6 5.6408 -6.5391 1.6128 24 9 4.9490 -5.3912 1.7828 25 6 5.3707 -7.3714 0.5171 26 6 4.2071 -4.5862 -0.1976 27 6 3.4584 -3.4352 -0.0906 28 1 -0.4849 0.8401 0.0004 29 1 0.3530 -4.7847 -0.2281 30 1 1.6794 -6.8433 -0.4292 31 1 4.6875 -9.6747 -2.3879 32 1 7.6577 -9.8228 1.1724 33 1 6.8257 -6.2530 3.3452 34 1 5.2857 -4.5325 -0.1857 35 1 3.9503 -2.4785 0.0040 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243590709.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:31 Heat of formation + Delta-G solvation = -7.801780 kcal Electronic energy + Delta-G solvation = -26292.937906 eV Core-core repulsion = 22086.585598 eV Total energy + Delta-G solvation = -4206.352308 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.40391 -49.28478 -41.36314 -39.15958 -37.57846 -36.75426 -34.13232 -32.51063 -31.57368 -30.49225 -30.37803 -28.84911 -25.77035 -25.05359 -24.38380 -22.91563 -22.03210 -21.03169 -19.44864 -18.47080 -18.08867 -17.96247 -17.11857 -16.79858 -16.38771 -16.17993 -15.85273 -15.61186 -14.91237 -14.77638 -14.62815 -14.48117 -14.38567 -13.84340 -13.64466 -13.50035 -13.10235 -12.91535 -12.68858 -12.46547 -11.95271 -11.85271 -11.54923 -11.40590 -11.20153 -11.05218 -10.76891 -10.63570 -10.54726 -9.54559 -9.45529 -9.37595 -9.01993 -8.63949 -8.32324 -7.36017 -6.66391 -4.21808 -0.21609 0.28782 1.32730 2.06633 2.11835 2.47215 3.02156 3.03820 3.09682 3.38959 3.74275 3.76904 3.80867 3.93669 4.03579 4.10542 4.27199 4.47992 4.53620 4.88372 4.94058 5.06299 5.21182 5.30966 5.40875 5.43015 5.50135 5.59817 5.66330 6.00698 6.09078 6.17545 6.30782 6.43746 6.66480 6.81102 6.85671 7.04421 7.10546 7.23199 7.56996 7.78901 7.98695 8.78431 9.44796 10.50199 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.018449 B = 0.003173 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.307949 B = 8821.597550 C = 9897.045643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.042 3.958 3 Si 0.944 3.056 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.392 4.392 8 H 0.098 0.902 9 O -0.161 6.161 10 C 0.175 3.825 11 C -0.202 4.202 12 C -0.016 4.016 13 C -0.197 4.197 14 C 0.325 3.675 15 N -0.534 5.534 16 C 0.327 3.673 17 N -0.533 5.533 18 C 0.217 3.783 19 C -0.165 4.165 20 C 0.173 3.827 21 F -0.125 7.125 22 C -0.216 4.216 23 C 0.199 3.801 24 F -0.095 7.095 25 C -0.217 4.217 26 C -0.009 4.009 27 C -0.241 4.241 28 H 0.274 0.726 29 H 0.124 0.876 30 H 0.117 0.883 31 H 0.199 0.801 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.107 0.893 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.004 -13.511 2.416 18.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.165 4.165 3 Si 0.768 3.232 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.468 4.468 8 H 0.115 0.885 9 O -0.062 6.062 10 C 0.118 3.882 11 C -0.221 4.221 12 C -0.036 4.036 13 C -0.200 4.200 14 C 0.171 3.829 15 N -0.249 5.249 16 C 0.038 3.962 17 N -0.248 5.248 18 C 0.088 3.912 19 C -0.185 4.185 20 C 0.150 3.850 21 F -0.104 7.104 22 C -0.236 4.236 23 C 0.177 3.823 24 F -0.072 7.072 25 C -0.223 4.223 26 C -0.028 4.028 27 C -0.261 4.261 28 H 0.084 0.916 29 H 0.142 0.858 30 H 0.135 0.865 31 H 0.216 0.784 32 H 0.173 0.827 33 H 0.174 0.826 34 H 0.125 0.875 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 11.461 -13.970 1.707 18.151 hybrid contribution 0.749 1.404 0.848 1.804 sum 12.210 -12.566 2.555 17.707 Atomic orbital electron populations 1.70035 1.06129 1.28165 1.44014 1.25396 0.95903 0.99150 0.96011 0.85588 0.79237 0.79846 0.78480 1.18854 1.19895 1.19911 1.21522 0.92128 0.80528 1.52589 0.88456 1.83930 1.34932 1.11791 1.75510 1.19538 0.90210 0.87857 0.90581 1.20088 0.99807 0.89838 1.12411 1.20527 0.91391 0.97198 0.94463 1.17688 0.92841 0.89257 1.20182 1.20577 0.86166 0.91206 0.84904 1.68721 1.28833 1.04932 1.22386 1.25062 0.85377 0.90515 0.95198 1.68854 1.19322 1.32418 1.04215 1.18233 0.92289 0.88413 0.92252 1.20515 1.01101 1.02433 0.94450 1.16865 0.87278 0.93240 0.87617 1.91561 1.60813 1.92254 1.65724 1.20810 0.99668 0.99419 1.03700 1.16822 0.90021 0.82652 0.92830 1.91737 1.76411 1.44785 1.94289 1.19623 1.04121 0.99056 0.99485 1.20656 0.98137 0.90897 0.93143 1.20977 0.93604 0.98683 1.12821 0.91631 0.85836 0.86536 0.78441 0.82653 0.82580 0.87482 0.84892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.60 13.67 55.48 0.76 -22.84 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 19.32 29.55 -169.99 -5.02 14.30 16 4 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 7 C -0.39 -10.27 9.48 30.90 0.29 -9.98 16 8 H 0.10 2.34 5.19 -52.49 -0.27 2.07 16 9 O -0.16 -4.31 9.75 0.50 0.00 -4.31 16 10 C 0.18 3.96 6.65 -38.95 -0.26 3.70 16 11 C -0.20 -4.03 9.97 -39.46 -0.39 -4.43 16 12 C -0.02 -0.29 9.76 -39.23 -0.38 -0.67 16 13 C -0.20 -3.42 4.78 -104.89 -0.50 -3.92 16 14 C 0.33 5.12 6.33 -82.21 -0.52 4.60 16 15 N -0.53 -7.99 10.36 -10.85 -0.11 -8.10 16 16 C 0.33 4.05 12.22 -92.25 -1.13 2.93 16 17 N -0.53 -6.94 10.45 -12.66 -0.13 -7.07 16 18 C 0.22 2.84 6.61 -84.85 -0.56 2.28 16 19 C -0.16 -1.78 9.96 -39.49 -0.39 -2.18 16 20 C 0.17 1.79 7.23 -39.74 -0.29 1.50 16 21 F -0.13 -1.24 17.24 2.25 0.04 -1.20 16 22 C -0.22 -2.32 9.91 -39.75 -0.39 -2.71 16 23 C 0.20 2.61 6.91 -39.44 -0.27 2.34 16 24 F -0.09 -1.41 12.21 2.25 0.03 -1.38 16 25 C -0.22 -3.08 5.74 -106.53 -0.61 -3.69 16 26 C -0.01 -0.15 6.61 -39.23 -0.26 -0.41 16 27 C -0.24 -4.91 9.15 -39.45 -0.36 -5.27 16 28 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 30 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 31 H 0.20 1.67 8.06 -52.49 -0.42 1.24 16 32 H 0.16 1.40 8.06 -52.48 -0.42 0.97 16 33 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.11 1.68 7.35 -52.49 -0.39 1.30 16 35 H 0.13 2.68 5.62 -52.49 -0.29 2.38 16 LS Contribution 318.11 15.07 4.79 4.79 Total: -1.00 -28.96 318.11 -7.97 -36.93 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -2.20 Total: 3.83 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: -6.13 Total: -14.94 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.51 Total: -38.01 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: 0.00 Total: -4.31 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.07 Total: -2.59 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.96 -7.97 -36.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590709.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.127 kcal (2) G-P(sol) polarization free energy of solvation -28.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds