Wall clock time and date at job start Tue Mar 31 2020 15:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31533 * 1 3 3 Si 1.86798 * 120.00366 * 2 1 4 4 H 1.48496 * 109.47244 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46811 * 299.99906 * 3 2 1 6 6 H 1.48502 * 109.47103 * 60.00085 * 3 2 1 7 7 C 1.38696 * 119.99762 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99842 * 180.02562 * 7 2 1 9 9 O 1.34804 * 119.99629 * 0.02562 * 7 2 1 10 10 C 1.35626 * 116.99677 * 174.94960 * 9 7 2 11 11 C 1.39085 * 119.92960 * 185.27609 * 10 9 7 12 12 C 1.37722 * 120.07109 * 179.75920 * 11 10 9 13 13 C 1.39678 * 119.92664 * 0.53441 * 12 11 10 14 14 C 1.47861 * 120.06734 * 179.74540 * 13 12 11 15 15 N 1.32891 * 120.93054 * 53.50183 * 14 13 12 16 16 C 1.32214 * 121.48267 * 179.97438 * 15 14 13 17 17 N 1.31256 * 122.99879 * 0.02562 * 16 15 14 18 18 C 1.34041 * 120.48497 * 359.97438 * 17 16 15 19 19 C 1.40076 * 121.96738 * 179.97438 * 18 17 16 20 20 C 1.36583 * 119.61950 * 180.02562 * 19 18 17 21 21 F 1.35096 * 119.48444 * 179.97438 * 20 19 18 22 22 C 1.39414 * 121.02898 * 0.02562 * 20 19 18 23 23 C 1.36570 * 120.85927 * 359.97438 * 22 20 19 24 24 F 1.35103 * 120.26430 * 180.02562 * 23 22 20 25 25 C 1.40214 * 119.46903 * 359.72211 * 23 22 20 26 26 C 1.39674 * 119.86017 * 359.71918 * 13 12 11 27 27 C 1.37724 * 119.93201 * 0.02562 * 26 13 12 28 28 H 0.97001 * 119.99246 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.96473 * 359.97438 * 11 10 9 30 30 H 1.07993 * 120.03620 * 180.23008 * 12 11 10 31 31 H 1.07997 * 118.50363 * 179.97438 * 16 15 14 32 32 H 1.08003 * 120.19022 * 0.02562 * 19 18 17 33 33 H 1.07998 * 119.57034 * 179.97438 * 22 20 19 34 34 H 1.07997 * 120.03183 * 179.97438 * 26 13 12 35 35 H 1.07994 * 119.96845 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 3.7094 1.3462 0.0006 5 1 1.8907 2.3963 -1.2126 6 1 1.8907 2.3964 1.2125 7 6 2.0088 -1.2012 0.0005 8 1 3.0887 -1.2012 0.0010 9 8 1.3346 -2.3685 0.0005 10 6 2.0692 -3.5037 -0.1053 11 6 1.4318 -4.7344 -0.2222 12 6 2.1749 -5.8884 -0.3348 13 6 3.5701 -5.8231 -0.3204 14 6 4.3709 -7.0608 -0.4354 15 7 4.1762 -7.9095 -1.4393 16 6 4.8862 -9.0189 -1.5531 17 7 5.8210 -9.3603 -0.6973 18 6 6.1001 -8.5763 0.3535 19 6 7.0906 -8.9106 1.2859 20 6 7.3351 -8.0765 2.3394 21 9 8.2906 -8.4019 3.2374 22 6 6.6132 -6.8951 2.5032 23 6 5.6408 -6.5391 1.6128 24 9 4.9490 -5.3912 1.7828 25 6 5.3707 -7.3714 0.5171 26 6 4.2071 -4.5862 -0.1976 27 6 3.4584 -3.4352 -0.0906 28 1 -0.4849 0.8401 0.0004 29 1 0.3530 -4.7847 -0.2281 30 1 1.6794 -6.8433 -0.4292 31 1 4.6875 -9.6747 -2.3879 32 1 7.6577 -9.8228 1.1724 33 1 6.8257 -6.2530 3.3452 34 1 5.2857 -4.5325 -0.1857 35 1 3.9503 -2.4785 0.0040 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243590709.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:30 Heat of formation + Delta-G solvation = -22.905594 kcal Electronic energy + Delta-G solvation = -26293.592857 eV Core-core repulsion = 22086.585598 eV Total energy + Delta-G solvation = -4207.007259 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.35980 -50.23178 -42.42834 -40.80293 -38.70223 -38.21601 -35.33157 -34.30054 -32.70156 -31.92725 -31.45526 -30.26837 -27.53895 -26.15693 -25.50597 -24.08986 -23.58140 -22.37734 -20.46645 -20.00947 -19.42384 -19.10811 -18.58959 -17.81847 -17.41370 -17.27957 -16.89117 -16.65235 -16.30050 -16.28443 -15.85175 -15.69013 -15.57817 -15.53073 -15.08448 -14.59545 -14.45780 -14.23514 -14.10116 -13.61660 -13.41616 -12.99904 -12.90770 -12.87580 -12.64792 -12.49020 -12.09859 -12.02068 -11.95331 -11.24776 -10.83807 -10.48262 -10.42101 -9.86694 -9.63163 -8.97670 -8.51829 -6.18807 -1.25959 -0.69126 0.17204 0.54790 0.67974 1.37013 1.43956 1.50721 1.54951 2.15496 2.45483 2.62477 2.70522 2.76751 2.87602 3.03962 3.09721 3.18901 3.36036 3.40849 3.65345 3.91650 4.00351 4.04148 4.15104 4.38990 4.43695 4.46559 4.56328 4.62353 4.77064 4.87291 5.04445 5.10367 5.14741 5.35699 5.45513 5.50002 5.58743 5.78893 5.97044 5.99479 6.92106 6.92676 7.68221 8.70435 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.018449 B = 0.003173 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.307949 B = 8821.597550 C = 9897.045643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.018 4.018 3 Si 1.018 2.982 4 H -0.249 1.249 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.416 4.416 8 H 0.108 0.892 9 O -0.216 6.216 10 C 0.145 3.855 11 C -0.209 4.209 12 C -0.014 4.014 13 C -0.173 4.173 14 C 0.304 3.696 15 N -0.543 5.543 16 C 0.322 3.678 17 N -0.526 5.526 18 C 0.204 3.796 19 C -0.152 4.152 20 C 0.181 3.819 21 F -0.117 7.117 22 C -0.191 4.191 23 C 0.173 3.827 24 F -0.111 7.111 25 C -0.220 4.220 26 C -0.003 4.003 27 C -0.245 4.245 28 H 0.275 0.725 29 H 0.124 0.876 30 H 0.142 0.858 31 H 0.237 0.763 32 H 0.178 0.822 33 H 0.179 0.821 34 H 0.132 0.868 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.438 -16.196 2.736 22.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.216 4.216 3 Si 0.837 3.163 4 H -0.172 1.172 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.491 4.491 8 H 0.125 0.875 9 O -0.121 6.121 10 C 0.092 3.908 11 C -0.228 4.228 12 C -0.033 4.033 13 C -0.175 4.175 14 C 0.149 3.851 15 N -0.257 5.257 16 C 0.035 3.965 17 N -0.241 5.241 18 C 0.075 3.925 19 C -0.172 4.172 20 C 0.158 3.842 21 F -0.096 7.096 22 C -0.210 4.210 23 C 0.151 3.849 24 F -0.089 7.089 25 C -0.225 4.225 26 C -0.023 4.023 27 C -0.264 4.264 28 H 0.084 0.916 29 H 0.142 0.858 30 H 0.160 0.840 31 H 0.253 0.747 32 H 0.195 0.805 33 H 0.197 0.803 34 H 0.149 0.851 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 14.944 -16.735 2.022 22.527 hybrid contribution 0.009 1.614 0.784 1.795 sum 14.953 -15.121 2.806 21.450 Atomic orbital electron populations 1.70169 1.08078 1.29048 1.47692 1.26609 0.96808 1.02768 0.95458 0.84532 0.78416 0.74755 0.78574 1.17246 1.19406 1.19324 1.21952 0.92780 0.81084 1.53298 0.87500 1.83917 1.36192 1.12725 1.79263 1.20020 0.91374 0.87809 0.91550 1.20287 1.00285 0.89870 1.12341 1.20787 0.91742 0.97316 0.93438 1.17979 0.92982 0.90213 1.16349 1.20338 0.87299 0.91072 0.86402 1.68672 1.29290 1.05494 1.22285 1.25757 0.84686 0.90116 0.95972 1.68921 1.19013 1.32127 1.04026 1.18487 0.92909 0.88164 0.92928 1.20732 0.99977 1.02975 0.93495 1.16787 0.87075 0.92839 0.87489 1.91595 1.60433 1.92122 1.65418 1.21044 0.97662 0.99246 1.03039 1.16915 0.91470 0.82704 0.93780 1.91693 1.77084 1.45709 1.94416 1.19640 1.03686 0.99758 0.99431 1.20850 0.99199 0.90149 0.92083 1.21047 0.92908 0.99614 1.12828 0.91593 0.85754 0.84042 0.74742 0.80463 0.80336 0.85063 0.85217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.04 13.67 21.62 0.30 -53.74 16 2 C -0.02 -0.96 5.49 84.85 0.47 -0.49 16 3 Si 1.02 41.02 29.55 68.60 2.03 43.05 16 4 H -0.25 -9.22 7.11 99.48 0.71 -8.51 16 5 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 6 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 7 C -0.42 -23.08 9.48 67.93 0.64 -22.43 16 8 H 0.11 5.40 5.19 -2.92 -0.02 5.39 16 9 O -0.22 -12.43 9.75 -21.12 -0.21 -12.64 16 10 C 0.15 6.91 6.65 22.68 0.15 7.06 16 11 C -0.21 -8.59 9.97 22.35 0.22 -8.37 16 12 C -0.01 -0.48 9.76 22.50 0.22 -0.26 16 13 C -0.17 -5.79 4.78 -20.03 -0.10 -5.88 16 14 C 0.30 8.87 6.33 42.35 0.27 9.14 16 15 N -0.54 -14.74 10.36 -188.24 -1.95 -16.69 16 16 C 0.32 6.86 12.22 180.92 2.21 9.07 16 17 N -0.53 -11.74 10.45 -193.96 -2.03 -13.77 16 18 C 0.20 4.60 6.61 40.13 0.27 4.87 16 19 C -0.15 -2.64 9.96 22.33 0.22 -2.42 16 20 C 0.18 2.98 7.23 22.17 0.16 3.14 16 21 F -0.12 -1.82 17.24 44.97 0.78 -1.05 16 22 C -0.19 -3.39 9.91 22.16 0.22 -3.17 16 23 C 0.17 4.10 6.91 22.36 0.15 4.26 16 24 F -0.11 -3.15 12.21 44.97 0.55 -2.60 16 25 C -0.22 -5.63 5.74 -21.10 -0.12 -5.75 16 26 C 0.00 -0.12 6.61 22.50 0.15 0.03 16 27 C -0.24 -10.19 9.15 22.35 0.20 -9.98 16 28 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 29 H 0.12 4.98 8.06 -2.91 -0.02 4.96 16 30 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 31 H 0.24 2.97 8.06 -2.91 -0.02 2.94 16 32 H 0.18 2.32 8.06 -2.91 -0.02 2.29 16 33 H 0.18 2.37 8.06 -2.91 -0.02 2.34 16 34 H 0.13 3.90 7.35 -2.91 -0.02 3.88 16 35 H 0.13 5.40 5.62 -2.91 -0.02 5.39 16 Total: -1.00 -67.14 318.11 5.99 -61.16 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 1.18 Total: 17.45 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 5.34 Total: -21.18 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -3.68 Total: -84.20 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -0.21 Total: -12.64 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 1.32 Total: -3.64 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -67.14 5.99 -61.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590709.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.253 kcal (2) G-P(sol) polarization free energy of solvation -67.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds