Wall clock time and date at job start Tue Mar 31 2020 15:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35535 * 117.00397 * 2 1 4 4 N 1.32371 * 120.45894 * 0.02562 * 3 2 1 5 5 C 1.32966 * 120.80599 * 180.02562 * 4 3 2 6 6 C 1.48212 * 118.88423 * 180.02562 * 5 4 3 7 7 C 1.39483 * 120.05553 * 180.25411 * 6 5 4 8 8 C 1.37807 * 119.94311 * 180.25287 * 7 6 5 9 9 C 1.39028 * 120.05392 * 359.47117 * 8 7 6 10 10 O 1.35667 * 119.94220 * 180.28003 * 9 8 7 11 11 C 1.34813 * 117.00160 * 354.44729 * 10 9 8 12 12 H 1.08001 * 119.99980 * 5.06020 * 11 10 9 13 13 C 1.38660 * 120.00050 * 185.05730 * 11 10 9 14 14 N 1.31544 * 120.00211 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 119.99957 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46780 * 60.00377 * 15 13 11 17 17 H 1.48499 * 109.46785 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.46922 * 300.00387 * 15 13 11 19 19 C 1.39022 * 120.11111 * 0.29576 * 9 8 7 20 20 C 1.37801 * 120.05844 * 359.96127 * 19 9 8 21 21 N 1.31810 * 122.23467 * 0.27626 * 5 4 3 22 22 C 1.34971 * 120.97623 * 359.44618 * 21 5 4 23 23 C 1.44791 * 129.99600 * 180.21884 * 22 21 5 24 24 C 1.32277 * 114.87262 * 180.29611 * 23 22 21 25 25 S 1.75374 * 111.30950 * 0.02562 * 24 23 22 26 26 C 1.39810 * 118.09077 * 0.53177 * 22 21 5 27 27 H 1.09011 * 109.47076 * 300.00029 * 1 2 3 28 28 H 1.08999 * 109.47336 * 59.99466 * 1 2 3 29 29 H 1.08997 * 109.47135 * 180.02562 * 1 2 3 30 30 H 1.08004 * 120.02998 * 359.97438 * 7 6 5 31 31 H 1.08000 * 119.96769 * 179.75215 * 8 7 6 32 32 H 0.97002 * 120.00317 * 179.97438 * 14 13 11 33 33 H 1.07993 * 119.97249 * 179.97438 * 19 9 8 34 34 H 1.07996 * 120.03250 * 180.02562 * 20 19 9 35 35 H 1.08007 * 122.56222 * 0.31671 * 23 22 21 36 36 H 1.08003 * 124.34846 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 7 1.3324 2.3235 0.0005 5 6 1.9289 3.5119 0.0000 6 6 1.0903 4.7339 0.0012 7 6 1.6905 5.9930 -0.0047 8 6 0.9085 7.1278 0.0017 9 6 -0.4774 7.0183 0.0029 10 8 -1.2450 8.1369 0.0034 11 6 -0.6055 9.3180 0.1190 12 1 0.4741 9.3494 0.1235 13 6 -1.3337 10.4926 0.2321 14 7 -2.6485 10.4544 0.2271 15 14 -0.4474 12.1292 0.3930 16 1 0.4057 12.3497 -0.8024 17 1 -1.4451 13.2240 0.4985 18 1 0.4016 12.1146 1.6113 19 6 -1.0780 5.7645 0.0038 20 6 -0.3006 4.6267 0.0028 21 7 3.2408 3.6400 -0.0064 22 6 4.0446 2.5558 -0.0016 23 6 5.4900 2.4689 -0.0027 24 6 5.9733 1.2376 -0.0030 25 16 4.6853 0.0474 -0.0027 26 6 3.4460 1.2924 -0.0011 27 1 -0.3634 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 2.7671 6.0786 -0.0097 31 1 1.3728 8.1029 0.0012 32 1 -3.1580 11.2761 0.3066 33 1 -2.1548 5.6821 0.0051 34 1 -0.7675 3.6530 0.0031 35 1 6.1248 3.3427 -0.0029 36 1 7.0260 0.9962 -0.0034 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243591252.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:05 Heat of formation + Delta-G solvation = 36.950199 kcal Electronic energy + Delta-G solvation = -23643.678377 eV Core-core repulsion = 19993.107047 eV Total energy + Delta-G solvation = -3650.571330 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.16281 -39.14564 -38.68413 -36.88538 -35.70973 -32.66984 -32.42003 -31.12209 -30.24805 -28.84591 -27.41063 -25.68039 -24.53102 -23.98711 -21.99069 -21.63517 -20.50028 -18.84806 -18.35456 -17.93974 -17.23792 -16.82657 -16.42106 -15.52823 -15.29182 -14.67404 -14.55497 -14.50556 -14.40545 -14.10269 -13.77629 -13.67036 -13.08792 -12.80980 -12.58193 -12.48306 -12.24583 -11.97169 -11.80802 -11.49638 -11.28784 -11.23366 -10.86366 -10.79471 -10.57976 -10.53142 -10.05898 -9.53034 -9.47968 -9.28642 -8.96017 -8.28637 -8.11462 -7.17472 -6.61717 -4.16963 0.32481 0.74864 1.23270 1.71782 1.95697 2.21746 2.32276 2.66454 3.06667 3.07977 3.10650 3.77152 3.82620 3.85938 3.97092 4.58599 4.62736 4.70429 4.88224 4.97066 5.07654 5.12988 5.13634 5.35273 5.44023 5.60881 5.67748 5.72920 5.78779 6.07672 6.17288 6.33326 6.55571 6.73632 6.82840 6.85992 7.01806 7.19435 7.26509 7.30967 7.67558 7.83973 8.20574 8.83049 9.49711 10.54831 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.022154 B = 0.002615 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.574759 B =10704.167416 C =11946.277381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.302 6.302 3 C 0.422 3.578 4 N -0.567 5.567 5 C 0.439 3.561 6 C -0.165 4.165 7 C -0.010 4.010 8 C -0.247 4.247 9 C 0.173 3.827 10 O -0.162 6.162 11 C -0.392 4.392 12 H 0.097 0.903 13 C 0.042 3.958 14 N -0.853 5.853 15 Si 0.944 3.056 16 H -0.267 1.267 17 H -0.277 1.277 18 H -0.267 1.267 19 C -0.204 4.204 20 C -0.018 4.018 21 N -0.522 5.522 22 C 0.204 3.796 23 C -0.119 4.119 24 C -0.164 4.164 25 S 0.133 5.867 26 C -0.301 4.301 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.100 0.900 30 H 0.124 0.876 31 H 0.133 0.867 32 H 0.274 0.726 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.159 0.841 36 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.477 -18.450 -0.267 22.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.206 6.206 3 C 0.224 3.776 4 N -0.299 5.299 5 C 0.176 3.824 6 C -0.169 4.169 7 C -0.030 4.030 8 C -0.266 4.266 9 C 0.116 3.884 10 O -0.062 6.062 11 C -0.468 4.468 12 H 0.115 0.885 13 C -0.164 4.164 14 N -0.486 5.486 15 Si 0.768 3.232 16 H -0.192 1.192 17 H -0.201 1.201 18 H -0.192 1.192 19 C -0.224 4.224 20 C -0.039 4.039 21 N -0.241 5.241 22 C 0.061 3.939 23 C -0.151 4.151 24 C -0.301 4.301 25 S 0.392 5.608 26 C -0.421 4.421 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.118 0.882 30 H 0.142 0.858 31 H 0.151 0.849 32 H 0.084 0.916 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.176 0.824 36 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 11.575 -19.260 -0.277 22.472 hybrid contribution 0.725 1.626 0.075 1.782 sum 12.300 -17.635 -0.201 21.501 Atomic orbital electron populations 1.23016 0.76070 1.03379 1.03402 1.86211 1.23885 1.23872 1.86587 1.19122 0.86322 0.85565 0.86619 1.68207 1.39503 0.98158 1.24030 1.20945 0.86018 0.89450 0.85991 1.17467 0.91626 0.88449 1.19328 1.20875 0.99432 0.90459 0.92276 1.21104 0.93315 0.99092 1.13122 1.19588 0.90132 0.87949 0.90720 1.83936 1.34609 1.12088 1.75615 1.21435 0.92495 0.80883 1.51954 0.88523 1.25382 0.95717 0.99316 0.96024 1.70021 1.05194 1.29389 1.43988 0.85721 0.78706 0.79287 0.79464 1.19236 1.20131 1.19231 1.20136 0.99810 0.89611 1.12805 1.20706 0.91772 0.97560 0.93813 1.68436 1.04733 1.30775 1.20146 1.20196 0.93935 0.86644 0.93141 1.20565 0.90850 0.98615 1.05028 1.25474 1.03893 0.96235 1.04543 1.84044 0.92764 1.06172 1.77780 1.23117 0.96231 1.00441 1.22318 0.91559 0.91562 0.88159 0.85786 0.84936 0.91584 0.85915 0.85763 0.82374 0.80437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.41 101.05 1.05 1.40 16 2 O -0.30 -3.89 10.50 -18.30 -0.19 -4.09 16 3 C 0.42 6.38 7.56 -16.50 -0.12 6.26 16 4 N -0.57 -9.44 8.34 -11.13 -0.09 -9.53 16 5 C 0.44 7.93 7.54 -157.34 -1.19 6.74 16 6 C -0.16 -3.14 5.88 -104.87 -0.62 -3.76 16 7 C -0.01 -0.20 9.55 -39.28 -0.37 -0.57 16 8 C -0.25 -5.26 9.15 -39.45 -0.36 -5.62 16 9 C 0.17 4.05 6.65 -39.00 -0.26 3.79 16 10 O -0.16 -4.43 9.75 0.35 0.00 -4.43 16 11 C -0.39 -10.49 9.48 30.89 0.29 -10.19 16 12 H 0.10 2.37 5.19 -52.49 -0.27 2.10 16 13 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 14 N -0.85 -24.02 13.67 55.48 0.76 -23.26 16 15 Si 0.94 19.65 29.55 -169.99 -5.02 14.63 16 16 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 17 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 18 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 19 C -0.20 -4.21 9.98 -39.45 -0.39 -4.60 16 20 C -0.02 -0.34 9.55 -39.27 -0.37 -0.72 16 21 N -0.52 -9.06 9.48 -8.39 -0.08 -9.14 16 22 C 0.20 3.05 7.21 -83.31 -0.60 2.44 16 23 C -0.12 -1.29 10.39 -38.92 -0.40 -1.70 16 24 C -0.16 -1.40 11.05 28.81 0.32 -1.08 16 25 S 0.13 1.37 23.23 -107.50 -2.50 -1.13 16 26 C -0.30 -4.30 6.49 -38.17 -0.25 -4.54 16 27 H 0.07 0.66 8.12 -51.92 -0.42 0.24 16 28 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.12 2.20 7.49 -52.48 -0.39 1.81 16 31 H 0.13 2.77 5.62 -52.49 -0.30 2.47 16 32 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 34 H 0.12 2.04 7.48 -52.49 -0.39 1.65 16 35 H 0.16 1.41 8.06 -52.48 -0.42 0.98 16 36 H 0.18 0.84 8.06 -52.48 -0.42 0.42 16 LS Contribution 334.86 15.07 5.05 5.05 Total: -1.00 -30.94 334.86 -8.48 -39.42 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -3.02 Total: 3.63 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -3.38 Total: -11.15 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.59 Total: -41.93 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.19 Total: -8.51 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.50 Total: -1.13 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.94 -8.48 -39.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591252.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.367 kcal (2) G-P(sol) polarization free energy of solvation -30.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds