Wall clock time and date at job start Tue Mar 31 2020 15:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35535 * 117.00397 * 2 1 4 4 N 1.32371 * 120.45894 * 0.02562 * 3 2 1 5 5 C 1.32966 * 120.80599 * 180.02562 * 4 3 2 6 6 C 1.48212 * 118.88423 * 180.02562 * 5 4 3 7 7 C 1.39483 * 120.05553 * 180.25411 * 6 5 4 8 8 C 1.37807 * 119.94311 * 180.25287 * 7 6 5 9 9 C 1.39028 * 120.05392 * 359.47117 * 8 7 6 10 10 O 1.35667 * 119.94220 * 180.28003 * 9 8 7 11 11 C 1.34813 * 117.00160 * 354.44729 * 10 9 8 12 12 H 1.08001 * 119.99980 * 5.06020 * 11 10 9 13 13 C 1.38660 * 120.00050 * 185.05730 * 11 10 9 14 14 N 1.31544 * 120.00211 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 119.99957 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46780 * 60.00377 * 15 13 11 17 17 H 1.48499 * 109.46785 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.46922 * 300.00387 * 15 13 11 19 19 C 1.39022 * 120.11111 * 0.29576 * 9 8 7 20 20 C 1.37801 * 120.05844 * 359.96127 * 19 9 8 21 21 N 1.31810 * 122.23467 * 0.27626 * 5 4 3 22 22 C 1.34971 * 120.97623 * 359.44618 * 21 5 4 23 23 C 1.44791 * 129.99600 * 180.21884 * 22 21 5 24 24 C 1.32277 * 114.87262 * 180.29611 * 23 22 21 25 25 S 1.75374 * 111.30950 * 0.02562 * 24 23 22 26 26 C 1.39810 * 118.09077 * 0.53177 * 22 21 5 27 27 H 1.09011 * 109.47076 * 300.00029 * 1 2 3 28 28 H 1.08999 * 109.47336 * 59.99466 * 1 2 3 29 29 H 1.08997 * 109.47135 * 180.02562 * 1 2 3 30 30 H 1.08004 * 120.02998 * 359.97438 * 7 6 5 31 31 H 1.08000 * 119.96769 * 179.75215 * 8 7 6 32 32 H 0.97002 * 120.00317 * 179.97438 * 14 13 11 33 33 H 1.07993 * 119.97249 * 179.97438 * 19 9 8 34 34 H 1.07996 * 120.03250 * 180.02562 * 20 19 9 35 35 H 1.08007 * 122.56222 * 0.31671 * 23 22 21 36 36 H 1.08003 * 124.34846 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 7 1.3324 2.3235 0.0005 5 6 1.9289 3.5119 0.0000 6 6 1.0903 4.7339 0.0012 7 6 1.6905 5.9930 -0.0047 8 6 0.9085 7.1278 0.0017 9 6 -0.4774 7.0183 0.0029 10 8 -1.2450 8.1369 0.0034 11 6 -0.6055 9.3180 0.1190 12 1 0.4741 9.3494 0.1235 13 6 -1.3337 10.4926 0.2321 14 7 -2.6485 10.4544 0.2271 15 14 -0.4474 12.1292 0.3930 16 1 0.4057 12.3497 -0.8024 17 1 -1.4451 13.2240 0.4985 18 1 0.4016 12.1146 1.6113 19 6 -1.0780 5.7645 0.0038 20 6 -0.3006 4.6267 0.0028 21 7 3.2408 3.6400 -0.0064 22 6 4.0446 2.5558 -0.0016 23 6 5.4900 2.4689 -0.0027 24 6 5.9733 1.2376 -0.0030 25 16 4.6853 0.0474 -0.0027 26 6 3.4460 1.2924 -0.0011 27 1 -0.3634 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 2.7671 6.0786 -0.0097 31 1 1.3728 8.1029 0.0012 32 1 -3.1580 11.2761 0.3066 33 1 -2.1548 5.6821 0.0051 34 1 -0.7675 3.6530 0.0031 35 1 6.1248 3.3427 -0.0029 36 1 7.0260 0.9962 -0.0034 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243591252.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:05 Heat of formation + Delta-G solvation = 17.232963 kcal Electronic energy + Delta-G solvation = -23644.533381 eV Core-core repulsion = 19993.107047 eV Total energy + Delta-G solvation = -3651.426334 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.32473 -40.81340 -39.77241 -38.41262 -36.88089 -34.39250 -33.77249 -32.31923 -31.87108 -30.25956 -28.35050 -27.48887 -25.75400 -25.17965 -23.50106 -22.98340 -21.76093 -20.06311 -19.77823 -19.27258 -18.86251 -18.01941 -17.46682 -16.92727 -16.37046 -16.26349 -16.05727 -15.73112 -15.52065 -15.48478 -15.27136 -15.00196 -14.53359 -14.28677 -13.87410 -13.72632 -13.57916 -13.05819 -13.04851 -12.86166 -12.79840 -12.46389 -12.35986 -12.30567 -12.14634 -11.68553 -11.27528 -11.12990 -10.85682 -10.57122 -10.40665 -9.90133 -9.31514 -8.63054 -8.51490 -6.18422 -0.76705 -0.44607 0.31741 0.56478 0.65127 0.85019 1.16508 1.37301 1.47935 1.53244 1.66409 2.16474 2.48449 2.62056 2.80702 2.90331 3.17902 3.39542 3.59477 3.66738 3.92280 4.09333 4.15204 4.34516 4.36767 4.44681 4.52042 4.65641 4.70603 4.81620 4.84647 4.94595 5.04998 5.09524 5.22561 5.46584 5.57560 5.60406 5.68041 5.91055 5.97028 6.03889 6.92452 6.94343 7.67118 8.70141 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.022154 B = 0.002615 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.574759 B =10704.167416 C =11946.277381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.302 6.302 3 C 0.412 3.588 4 N -0.576 5.576 5 C 0.418 3.582 6 C -0.149 4.149 7 C -0.010 4.010 8 C -0.248 4.248 9 C 0.144 3.856 10 O -0.214 6.214 11 C -0.418 4.418 12 H 0.108 0.892 13 C -0.017 4.017 14 N -0.913 5.913 15 Si 1.019 2.981 16 H -0.256 1.256 17 H -0.272 1.272 18 H -0.257 1.257 19 C -0.207 4.207 20 C -0.011 4.011 21 N -0.536 5.536 22 C 0.181 3.819 23 C -0.141 4.141 24 C -0.132 4.132 25 S 0.176 5.824 26 C -0.318 4.318 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.136 0.864 30 H 0.142 0.858 31 H 0.132 0.868 32 H 0.276 0.724 33 H 0.128 0.872 34 H 0.149 0.851 35 H 0.177 0.823 36 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.187 -21.541 -0.216 26.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.205 6.205 3 C 0.215 3.785 4 N -0.309 5.309 5 C 0.152 3.848 6 C -0.152 4.152 7 C -0.030 4.030 8 C -0.267 4.267 9 C 0.091 3.909 10 O -0.118 6.118 11 C -0.494 4.494 12 H 0.125 0.875 13 C -0.216 4.216 14 N -0.550 5.550 15 Si 0.837 3.163 16 H -0.180 1.180 17 H -0.196 1.196 18 H -0.181 1.181 19 C -0.226 4.226 20 C -0.031 4.031 21 N -0.255 5.255 22 C 0.038 3.962 23 C -0.171 4.171 24 C -0.269 4.269 25 S 0.436 5.564 26 C -0.437 4.437 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.154 0.846 30 H 0.159 0.841 31 H 0.150 0.850 32 H 0.085 0.915 33 H 0.146 0.854 34 H 0.167 0.833 35 H 0.194 0.806 36 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 15.346 -22.451 -0.230 27.195 hybrid contribution -0.091 1.870 0.045 1.873 sum 15.255 -20.580 -0.185 25.618 Atomic orbital electron populations 1.23292 0.74455 1.05661 1.02986 1.86230 1.25453 1.22595 1.86187 1.19373 0.87082 0.85715 0.86352 1.68097 1.40008 0.98228 1.24594 1.20676 0.86490 0.89449 0.88211 1.17772 0.92104 0.89215 1.16106 1.21009 1.00121 0.89951 0.91956 1.21183 0.92766 0.99864 1.12883 1.20057 0.91107 0.88080 0.91686 1.83925 1.35839 1.12960 1.79118 1.21897 0.93227 0.81417 1.52821 0.87519 1.26618 0.96487 1.03089 0.95372 1.70160 1.07079 1.30392 1.47345 0.84648 0.77570 0.74025 0.80031 1.17997 1.19608 1.18076 1.20351 1.00484 0.89377 1.12395 1.20913 0.91669 0.97820 0.92690 1.68331 1.04616 1.32469 1.20133 1.20839 0.95610 0.86250 0.93524 1.20761 0.88980 1.00437 1.06948 1.26054 1.05581 0.94588 1.00694 1.84004 0.91463 1.04856 1.76043 1.23557 0.96984 1.02132 1.21077 0.91976 0.91962 0.84574 0.84059 0.85019 0.91536 0.85386 0.83333 0.80558 0.75748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.41 113.37 1.18 1.70 16 2 O -0.30 -7.10 10.50 -88.39 -0.93 -8.03 16 3 C 0.41 11.76 7.56 85.14 0.64 12.40 16 4 N -0.58 -18.54 8.34 -302.01 -2.52 -21.06 16 5 C 0.42 14.74 7.54 137.63 1.04 15.78 16 6 C -0.15 -5.62 5.88 -20.02 -0.12 -5.74 16 7 C -0.01 -0.41 9.55 22.47 0.21 -0.19 16 8 C -0.25 -10.90 9.15 22.36 0.20 -10.70 16 9 C 0.14 7.08 6.65 22.65 0.15 7.23 16 10 O -0.21 -12.52 9.75 -21.65 -0.21 -12.73 16 11 C -0.42 -23.65 9.48 67.92 0.64 -23.01 16 12 H 0.11 5.50 5.19 -2.91 -0.02 5.48 16 13 C -0.02 -0.92 5.49 84.84 0.47 -0.46 16 14 N -0.91 -54.58 13.67 21.61 0.30 -54.28 16 15 Si 1.02 41.60 29.55 68.60 2.03 43.62 16 16 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 17 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 18 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 19 C -0.21 -8.82 9.98 22.35 0.22 -8.59 16 20 C -0.01 -0.41 9.55 22.47 0.21 -0.20 16 21 N -0.54 -17.96 9.48 -180.47 -1.71 -19.67 16 22 C 0.18 4.98 7.21 40.72 0.29 5.28 16 23 C -0.14 -2.55 10.39 22.89 0.24 -2.31 16 24 C -0.13 -1.56 11.05 66.76 0.74 -0.82 16 25 S 0.18 2.89 23.23 -56.49 -1.31 1.58 16 26 C -0.32 -8.28 6.49 23.18 0.15 -8.13 16 27 H 0.06 1.14 8.12 -2.38 -0.02 1.12 16 28 H 0.06 1.14 8.12 -2.39 -0.02 1.12 16 29 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.14 4.94 7.49 -2.91 -0.02 4.92 16 31 H 0.13 5.73 5.62 -2.91 -0.02 5.71 16 32 H 0.28 15.08 8.31 -92.71 -0.77 14.31 16 33 H 0.13 5.21 8.06 -2.91 -0.02 5.19 16 34 H 0.15 4.75 7.48 -2.91 -0.02 4.73 16 35 H 0.18 2.49 8.06 -2.91 -0.02 2.46 16 36 H 0.23 0.53 8.06 -2.91 -0.02 0.50 16 Total: -1.00 -72.73 334.86 3.07 -69.66 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 1.15 Total: 18.66 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: 6.28 Total: -17.76 kcal Atomic # 7 Polarization: -91.08 SS G_CDS: -3.93 Total: -95.02 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -1.14 Total: -20.76 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.62 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -1.31 Total: 1.58 kcal Total: -72.73 3.07 -69.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591252.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.897 kcal (2) G-P(sol) polarization free energy of solvation -72.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds