Wall clock time and date at job start Tue Mar 31 2020 15:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48494 * 109.46915 * 270.00102 * 3 2 1 5 5 H 1.48507 * 109.47197 * 29.99742 * 3 2 1 6 6 H 1.48498 * 109.47171 * 149.99913 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00637 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 O 1.42905 * 109.47264 * 179.97438 * 9 7 2 11 11 C 1.35880 * 116.99968 * 179.97438 * 10 9 7 12 12 C 1.38854 * 119.92031 * 359.72588 * 11 10 9 13 13 C 1.37875 * 120.08140 * 179.76080 * 12 11 10 14 14 C 1.39542 * 119.91251 * 0.51381 * 13 12 11 15 15 C 1.48050 * 120.07511 * 179.76413 * 14 13 12 16 16 C 1.38071 * 120.67057 * 129.97908 * 15 14 13 17 17 C 1.39227 * 121.43948 * 180.02562 * 16 15 14 18 18 C 1.35726 * 122.52043 * 359.97438 * 17 16 15 19 19 Cl 1.73598 * 119.77932 * 180.02562 * 18 17 16 20 20 C 1.41176 * 120.44289 * 359.97438 * 18 17 16 21 21 C 1.38245 * 134.87540 * 180.02562 * 20 18 17 22 22 N 1.34041 * 107.88737 * 179.34069 * 21 20 18 23 23 H 0.96997 * 125.04576 * 180.02562 * 22 21 20 24 24 N 1.39989 * 109.91328 * 0.54912 * 22 21 20 25 25 C 1.31680 * 108.95672 * 359.50761 * 24 22 21 26 26 C 1.39530 * 119.84106 * 359.74117 * 14 13 12 27 27 C 1.37866 * 119.91754 * 0.02562 * 26 14 13 28 28 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 30 30 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 31 31 H 1.07994 * 119.95431 * 0.02562 * 12 11 10 32 32 H 1.07994 * 120.04225 * 180.24901 * 13 12 11 33 33 H 1.08001 * 119.27799 * 359.97438 * 16 15 14 34 34 H 1.07999 * 118.73573 * 179.97438 * 17 16 15 35 35 H 1.08000 * 126.05232 * 359.93949 * 21 20 18 36 36 H 1.08000 * 120.03892 * 180.02562 * 26 14 13 37 37 H 1.08003 * 119.95895 * 180.02562 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6528 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1797 -3.5853 0.0005 11 6 1.6602 -4.8410 0.0011 12 6 0.2834 -5.0209 0.0074 13 6 -0.2472 -6.2935 0.0029 14 6 0.6013 -7.4012 0.0030 15 6 0.0354 -8.7693 0.0035 16 6 0.4710 -9.7120 -0.9063 17 6 -0.0505 -11.0029 -0.9205 18 6 -1.0086 -11.4124 -0.0507 19 17 -1.6079 -13.0396 -0.1315 20 6 -1.5204 -10.5241 0.9199 21 6 -2.4671 -10.6156 1.9232 22 7 -2.5214 -9.4306 2.5473 23 1 -3.1048 -9.2202 3.2931 24 7 -1.6197 -8.5382 1.9555 25 6 -0.9924 -9.1521 0.9739 26 6 1.9843 -7.2165 0.0021 27 6 2.5076 -5.9410 0.0016 28 1 -0.4849 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8903 31 1 -0.3725 -4.1630 0.0114 32 1 -1.3182 -6.4327 0.0038 33 1 1.2322 -9.4419 -1.6232 34 1 0.3218 -11.7053 -1.6516 35 1 -3.0517 -11.4902 2.1676 36 1 2.6440 -8.0716 0.0017 37 1 3.5780 -5.7972 0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244399563.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:05 Heat of formation + Delta-G solvation = 65.531566 kcal Electronic energy + Delta-G solvation = -23317.325104 eV Core-core repulsion = 19665.949448 eV Total energy + Delta-G solvation = -3651.375655 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.47099 -39.38061 -37.77373 -36.95378 -35.99160 -32.99496 -32.34963 -31.19962 -30.60375 -29.89454 -28.13768 -27.07402 -24.46350 -23.43464 -22.43178 -21.97497 -21.23202 -20.00174 -18.45480 -17.47652 -17.14157 -16.50162 -16.33925 -15.33821 -15.26284 -15.13623 -14.78478 -14.57278 -14.36362 -13.95829 -13.56333 -13.07399 -13.03617 -12.89434 -12.64431 -12.41151 -11.99336 -11.79493 -11.56882 -11.35317 -11.18035 -11.01921 -10.96841 -10.64399 -10.49989 -10.29540 -10.15649 -10.08226 -9.28318 -9.09854 -8.63474 -8.56304 -8.00402 -7.18683 -6.25143 -4.28928 0.18767 1.52316 1.77633 1.80821 1.86178 2.16333 2.42669 3.24052 3.29166 3.34097 3.45983 3.96185 4.14243 4.16453 4.31862 4.52828 4.74608 4.87717 4.90740 5.06749 5.12050 5.31859 5.34285 5.40028 5.64894 5.77830 5.83081 5.98207 6.06592 6.10035 6.28949 6.44875 6.47062 6.69966 6.74196 6.80878 6.92301 7.00874 7.14358 7.26049 7.30771 7.67797 7.95029 8.46063 8.83660 9.36280 10.86090 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.028252 B = 0.002223 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.825427 B =12594.609834 C =13254.367398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.914 3.086 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.524 4.524 8 H 0.071 0.929 9 C 0.192 3.808 10 O -0.315 6.315 11 C 0.163 3.837 12 C -0.213 4.213 13 C -0.045 4.045 14 C -0.119 4.119 15 C 0.015 3.985 16 C -0.086 4.086 17 C -0.125 4.125 18 C 0.026 3.974 19 Cl -0.080 7.080 20 C -0.204 4.204 21 C 0.090 3.910 22 N -0.428 5.428 23 H 0.446 0.554 24 N -0.277 5.277 25 C 0.122 3.878 26 C -0.062 4.062 27 C -0.172 4.172 28 H 0.267 0.733 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.135 0.865 32 H 0.117 0.883 33 H 0.140 0.860 34 H 0.133 0.867 35 H 0.189 0.811 36 H 0.124 0.876 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.351 -25.968 1.736 26.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.740 3.260 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.562 4.562 8 H 0.089 0.911 9 C 0.119 3.881 10 O -0.227 6.227 11 C 0.115 3.885 12 C -0.232 4.232 13 C -0.064 4.064 14 C -0.119 4.119 15 C 0.012 3.988 16 C -0.108 4.108 17 C -0.145 4.145 18 C -0.003 4.003 19 Cl -0.051 7.051 20 C -0.215 4.215 21 C -0.067 4.067 22 N -0.129 5.129 23 H 0.291 0.709 24 N -0.104 5.104 25 C -0.036 4.036 26 C -0.080 4.080 27 C -0.191 4.191 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.153 0.847 32 H 0.135 0.865 33 H 0.158 0.842 34 H 0.150 0.850 35 H 0.206 0.794 36 H 0.142 0.858 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.493 -24.751 2.418 25.468 hybrid contribution -0.417 0.077 0.044 0.427 sum -5.911 -24.673 2.462 25.490 Atomic orbital electron populations 1.69952 1.06135 1.27614 1.49551 1.24942 0.95055 0.99564 0.94685 0.86241 0.79623 0.81726 0.78387 1.20267 1.20919 1.19478 1.20977 0.94280 0.88733 1.52224 0.91108 1.20676 0.88667 0.81767 0.96974 1.86121 1.39209 1.11890 1.85529 1.19413 0.91625 0.86513 0.90961 1.21388 0.94810 0.98317 1.08682 1.20873 0.98890 0.91086 0.95504 1.18247 0.93112 0.90591 1.09945 1.18819 0.93635 0.93315 0.93037 1.20909 1.00189 0.91451 0.98216 1.20282 0.97572 0.96991 0.99673 1.19791 0.98243 0.84723 0.97533 1.98355 1.87615 1.21243 1.97853 1.19139 1.04488 0.95390 1.02437 1.22631 0.98945 0.91102 0.93985 1.46383 1.30982 1.08249 1.27275 0.70907 1.77733 1.07411 1.12654 1.12553 1.21917 0.96232 0.90837 0.94591 1.20849 0.93372 0.96165 0.97635 1.20322 0.99653 0.90277 1.08823 0.92326 0.95971 0.95974 0.84741 0.86516 0.84220 0.84957 0.79439 0.85825 0.85398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.91 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.52 -15.03 9.43 -34.44 -0.32 -15.36 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.19 5.13 4.49 36.01 0.16 5.30 16 10 O -0.32 -7.69 10.12 -19.36 -0.20 -7.89 16 11 C 0.16 3.38 6.69 -39.12 -0.26 3.12 16 12 C -0.21 -4.18 9.02 -39.49 -0.36 -4.54 16 13 C -0.05 -0.77 9.57 -39.23 -0.38 -1.15 16 14 C -0.12 -1.82 5.52 -104.90 -0.58 -2.40 16 15 C 0.02 0.20 5.63 -102.63 -0.58 -0.37 16 16 C -0.09 -0.93 9.45 -39.28 -0.37 -1.30 16 17 C -0.12 -1.21 9.59 -40.11 -0.38 -1.59 16 18 C 0.03 0.26 6.32 -39.37 -0.25 0.01 16 19 Cl -0.08 -0.67 28.86 -51.86 -1.50 -2.17 16 20 C -0.20 -2.23 6.18 -105.18 -0.65 -2.88 16 21 C 0.09 0.71 11.97 -16.58 -0.20 0.51 16 22 N -0.43 -3.71 7.19 30.85 0.22 -3.48 16 23 H 0.45 2.15 8.96 -182.68 -1.64 0.51 16 24 N -0.28 -3.74 12.69 34.31 0.44 -3.31 16 25 C 0.12 1.64 7.28 -81.03 -0.59 1.05 16 26 C -0.06 -0.92 9.50 -39.24 -0.37 -1.29 16 27 C -0.17 -2.96 9.97 -39.49 -0.39 -3.35 16 28 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.02 0.62 7.67 -51.93 -0.40 0.22 16 30 H 0.02 0.62 7.64 -51.93 -0.40 0.22 16 31 H 0.13 2.78 6.28 -52.49 -0.33 2.45 16 32 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 33 H 0.14 1.25 8.02 -52.49 -0.42 0.83 16 34 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.19 0.74 8.06 -52.49 -0.42 0.31 16 36 H 0.12 1.44 8.05 -52.49 -0.42 1.01 16 37 H 0.13 2.00 8.06 -52.48 -0.42 1.58 16 LS Contribution 344.05 15.07 5.18 5.18 Total: -1.00 -32.85 344.05 -10.60 -43.45 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -4.84 Total: -0.15 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -5.62 Total: -22.66 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 1.39 Total: -32.08 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -0.20 Total: -7.89 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.85 -10.60 -43.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244399563.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.978 kcal (2) G-P(sol) polarization free energy of solvation -32.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds