Wall clock time and date at job start Tue Mar 31 2020 15:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48494 * 109.46915 * 270.00102 * 3 2 1 5 5 H 1.48507 * 109.47197 * 29.99742 * 3 2 1 6 6 H 1.48498 * 109.47171 * 149.99913 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00637 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 O 1.42905 * 109.47264 * 179.97438 * 9 7 2 11 11 C 1.35880 * 116.99968 * 179.97438 * 10 9 7 12 12 C 1.38854 * 119.92031 * 359.72588 * 11 10 9 13 13 C 1.37875 * 120.08140 * 179.76080 * 12 11 10 14 14 C 1.39542 * 119.91251 * 0.51381 * 13 12 11 15 15 C 1.48050 * 120.07511 * 179.76413 * 14 13 12 16 16 C 1.38071 * 120.67057 * 129.97908 * 15 14 13 17 17 C 1.39227 * 121.43948 * 180.02562 * 16 15 14 18 18 C 1.35726 * 122.52043 * 359.97438 * 17 16 15 19 19 Cl 1.73598 * 119.77932 * 180.02562 * 18 17 16 20 20 C 1.41176 * 120.44289 * 359.97438 * 18 17 16 21 21 C 1.38245 * 134.87540 * 180.02562 * 20 18 17 22 22 N 1.34041 * 107.88737 * 179.34069 * 21 20 18 23 23 H 0.96997 * 125.04576 * 180.02562 * 22 21 20 24 24 N 1.39989 * 109.91328 * 0.54912 * 22 21 20 25 25 C 1.31680 * 108.95672 * 359.50761 * 24 22 21 26 26 C 1.39530 * 119.84106 * 359.74117 * 14 13 12 27 27 C 1.37866 * 119.91754 * 0.02562 * 26 14 13 28 28 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 30 30 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 31 31 H 1.07994 * 119.95431 * 0.02562 * 12 11 10 32 32 H 1.07994 * 120.04225 * 180.24901 * 13 12 11 33 33 H 1.08001 * 119.27799 * 359.97438 * 16 15 14 34 34 H 1.07999 * 118.73573 * 179.97438 * 17 16 15 35 35 H 1.08000 * 126.05232 * 359.93949 * 21 20 18 36 36 H 1.08000 * 120.03892 * 180.02562 * 26 14 13 37 37 H 1.08003 * 119.95895 * 180.02562 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6528 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1797 -3.5853 0.0005 11 6 1.6602 -4.8410 0.0011 12 6 0.2834 -5.0209 0.0074 13 6 -0.2472 -6.2935 0.0029 14 6 0.6013 -7.4012 0.0030 15 6 0.0354 -8.7693 0.0035 16 6 0.4710 -9.7120 -0.9063 17 6 -0.0505 -11.0029 -0.9205 18 6 -1.0086 -11.4124 -0.0507 19 17 -1.6079 -13.0396 -0.1315 20 6 -1.5204 -10.5241 0.9199 21 6 -2.4671 -10.6156 1.9232 22 7 -2.5214 -9.4306 2.5473 23 1 -3.1048 -9.2202 3.2931 24 7 -1.6197 -8.5382 1.9555 25 6 -0.9924 -9.1521 0.9739 26 6 1.9843 -7.2165 0.0021 27 6 2.5076 -5.9410 0.0016 28 1 -0.4849 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8903 31 1 -0.3725 -4.1630 0.0114 32 1 -1.3182 -6.4327 0.0038 33 1 1.2322 -9.4419 -1.6232 34 1 0.3218 -11.7053 -1.6516 35 1 -3.0517 -11.4902 2.1676 36 1 2.6440 -8.0716 0.0017 37 1 3.5780 -5.7972 0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244399563.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:04 Heat of formation + Delta-G solvation = 46.310874 kcal Electronic energy + Delta-G solvation = -23318.158576 eV Core-core repulsion = 19665.949448 eV Total energy + Delta-G solvation = -3652.209127 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.25601 -40.88881 -38.86891 -38.05008 -36.96526 -35.09023 -33.36539 -32.17919 -31.91396 -30.89079 -29.85465 -28.46157 -25.63028 -25.04303 -23.66254 -23.01188 -22.55167 -21.00067 -19.25423 -19.17282 -18.48205 -17.98628 -17.26766 -16.92577 -16.49115 -16.36064 -16.16124 -15.96727 -15.62281 -15.31678 -14.63041 -14.39622 -14.21956 -13.91971 -13.77573 -13.67484 -13.50927 -13.04271 -13.02746 -12.80196 -12.59475 -12.39381 -12.24682 -11.96541 -11.83100 -11.80558 -11.45451 -11.34759 -11.04938 -10.73316 -9.96837 -9.91019 -9.20029 -8.40966 -8.34653 -6.55825 -0.62857 0.42045 0.45813 0.78112 1.10292 1.29821 1.38173 1.41577 1.53642 1.78018 2.26245 2.56666 2.73381 2.86424 2.93777 3.21552 3.47916 3.85414 3.93295 4.00266 4.15102 4.16095 4.33207 4.38806 4.49426 4.63672 4.70061 4.76572 4.84089 4.93981 5.04152 5.10452 5.26908 5.31321 5.41314 5.43314 5.53806 5.64934 5.73179 5.81608 5.89422 6.18590 6.48711 6.50820 6.77524 7.16349 8.71514 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.028252 B = 0.002223 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.825427 B =12594.609834 C =13254.367398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.991 3.009 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.262 1.262 7 C -0.557 4.557 8 H 0.069 0.931 9 C 0.212 3.788 10 O -0.335 6.335 11 C 0.115 3.885 12 C -0.226 4.226 13 C -0.054 4.054 14 C -0.092 4.092 15 C -0.035 4.035 16 C -0.054 4.054 17 C -0.142 4.142 18 C 0.039 3.961 19 Cl -0.060 7.060 20 C -0.232 4.232 21 C 0.123 3.877 22 N -0.416 5.416 23 H 0.461 0.539 24 N -0.335 5.335 25 C 0.105 3.895 26 C -0.053 4.053 27 C -0.164 4.164 28 H 0.274 0.726 29 H 0.000 1.000 30 H -0.002 1.002 31 H 0.107 0.893 32 H 0.119 0.881 33 H 0.160 0.840 34 H 0.158 0.842 35 H 0.234 0.766 36 H 0.167 0.833 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.006 -29.110 1.673 29.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.812 3.188 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.087 0.913 9 C 0.139 3.861 10 O -0.248 6.248 11 C 0.068 3.932 12 C -0.245 4.245 13 C -0.072 4.072 14 C -0.093 4.093 15 C -0.039 4.039 16 C -0.076 4.076 17 C -0.162 4.162 18 C 0.010 3.990 19 Cl -0.031 7.031 20 C -0.243 4.243 21 C -0.035 4.035 22 N -0.118 5.118 23 H 0.309 0.691 24 N -0.162 5.162 25 C -0.051 4.051 26 C -0.071 4.071 27 C -0.182 4.182 28 H 0.083 0.917 29 H 0.018 0.982 30 H 0.016 0.984 31 H 0.125 0.875 32 H 0.137 0.863 33 H 0.178 0.822 34 H 0.176 0.824 35 H 0.250 0.750 36 H 0.184 0.816 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.163 -27.917 2.367 28.489 hybrid contribution -0.723 0.615 0.102 0.954 sum -5.885 -27.302 2.469 28.038 Atomic orbital electron populations 1.70071 1.07862 1.29069 1.49561 1.26023 0.96045 1.03548 0.93418 0.85073 0.78309 0.76344 0.79037 1.19001 1.19769 1.18638 1.21332 0.94447 0.90060 1.53591 0.91298 1.20168 0.88448 0.82794 0.94715 1.86031 1.38620 1.12900 1.87298 1.19788 0.92643 0.85883 0.94861 1.21249 0.94426 0.98684 1.10120 1.20910 0.99419 0.90701 0.96216 1.18537 0.93243 0.91375 1.06096 1.18752 0.96376 0.92751 0.95983 1.21198 0.98804 0.91105 0.96502 1.20536 0.98007 0.97013 1.00623 1.19985 0.97243 0.85319 0.96476 1.98368 1.87312 1.19703 1.97731 1.19450 1.05963 0.94742 1.04136 1.23357 0.97016 0.91498 0.91678 1.46416 1.30138 1.08000 1.27265 0.69104 1.77657 1.09664 1.14752 1.14148 1.22063 0.96289 0.92164 0.94588 1.21280 0.93724 0.96259 0.95849 1.20611 1.00122 0.90040 1.07474 0.91722 0.98201 0.98443 0.87510 0.86342 0.82212 0.82399 0.74989 0.81567 0.83762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.98 13.29 21.45 0.28 -55.69 16 2 C 0.01 0.52 5.46 84.65 0.46 0.98 16 3 Si 0.99 44.30 29.54 68.60 2.03 46.32 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.56 -33.55 9.43 25.60 0.24 -33.31 16 8 H 0.07 4.06 7.81 -2.91 -0.02 4.04 16 9 C 0.21 12.35 4.49 71.24 0.32 12.67 16 10 O -0.33 -17.60 10.12 -92.20 -0.93 -18.53 16 11 C 0.11 5.07 6.69 22.57 0.15 5.22 16 12 C -0.23 -9.72 9.02 22.33 0.20 -9.52 16 13 C -0.05 -1.97 9.57 22.50 0.22 -1.75 16 14 C -0.09 -2.81 5.52 -20.05 -0.11 -2.92 16 15 C -0.04 -0.90 5.63 -18.58 -0.10 -1.01 16 16 C -0.05 -1.03 9.45 22.47 0.21 -0.81 16 17 C -0.14 -2.27 9.59 21.92 0.21 -2.06 16 18 C 0.04 0.66 6.32 22.41 0.14 0.80 16 19 Cl -0.06 -0.79 28.86 -2.72 -0.08 -0.87 16 20 C -0.23 -4.50 6.18 -20.23 -0.13 -4.63 16 21 C 0.12 1.55 11.97 84.36 1.01 2.56 16 22 N -0.42 -6.51 7.19 -56.31 -0.40 -6.91 16 23 H 0.46 3.66 8.96 -213.39 -1.91 1.75 16 24 N -0.33 -9.00 12.69 -45.35 -0.58 -9.58 16 25 C 0.11 2.75 7.28 43.63 0.32 3.07 16 26 C -0.05 -1.51 9.50 22.49 0.21 -1.29 16 27 C -0.16 -5.70 9.97 22.33 0.22 -5.47 16 28 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 29 H 0.00 0.01 7.67 -2.39 -0.02 -0.01 16 30 H 0.00 -0.13 7.64 -2.38 -0.02 -0.15 16 31 H 0.11 5.05 6.28 -2.91 -0.02 5.03 16 32 H 0.12 4.14 8.06 -2.91 -0.02 4.12 16 33 H 0.16 2.26 8.02 -2.91 -0.02 2.24 16 34 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.23 0.65 8.06 -2.91 -0.02 0.62 16 36 H 0.17 3.26 8.05 -2.91 -0.02 3.24 16 37 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -76.58 344.05 3.12 -73.46 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -0.78 Total: 9.29 kcal Atomic # 6 Polarization: -41.07 SS G_CDS: 3.58 Total: -37.49 kcal Atomic # 7 Polarization: -71.49 SS G_CDS: -0.70 Total: -72.18 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.93 Total: -18.53 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.08 Total: -0.87 kcal Total: -76.58 3.12 -73.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244399563.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.776 kcal (2) G-P(sol) polarization free energy of solvation -76.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds