Wall clock time and date at job start Tue Mar 31 2020 15:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39575 * 120.44789 * 196.35909 * 3 2 1 5 5 C 1.37716 * 120.18895 * 179.70015 * 4 3 2 6 6 C 1.39847 * 121.17159 * 0.29909 * 5 4 3 7 7 C 1.48256 * 119.54596 * 179.97438 * 6 5 4 8 8 C 1.39460 * 119.93405 * 179.72400 * 7 6 5 9 9 C 1.37956 * 120.06082 * 179.76710 * 8 7 6 10 10 F 1.35096 * 120.03157 * 180.27899 * 9 8 7 11 11 C 1.40010 * 119.93292 * 0.48267 * 9 8 7 12 12 C 1.47459 * 120.06231 * 179.78651 * 11 9 8 13 13 N 1.34777 * 119.99303 * 89.98221 * 12 11 9 14 14 O 1.21592 * 120.00053 * 269.98552 * 12 11 9 15 15 C 1.40001 * 119.87100 * 359.77131 * 11 9 8 16 16 F 1.35104 * 120.03184 * 179.97438 * 15 11 9 17 17 C 1.37946 * 119.93581 * 359.97438 * 15 11 9 18 18 C 1.38637 * 120.91700 * 359.97438 * 6 5 4 19 19 C 1.40625 * 119.72814 * 359.97438 * 18 6 5 20 20 C 1.40834 * 120.55672 * 180.02562 * 19 18 6 21 21 H 1.08000 * 120.00298 * 204.49677 * 20 19 18 22 22 C 1.40241 * 119.99743 * 24.49415 * 20 19 18 23 23 N 1.30656 * 119.99991 * 17.45010 * 22 20 19 24 24 Si 1.86798 * 120.00200 * 197.45080 * 22 20 19 25 25 H 1.48502 * 109.47116 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47099 * 119.99959 * 24 22 20 27 27 H 1.48493 * 109.47347 * 239.99985 * 24 22 20 28 28 H 1.07995 * 119.90883 * 359.97438 * 4 3 2 29 29 H 1.07999 * 119.41474 * 180.27491 * 5 4 3 30 30 H 1.07997 * 119.97450 * 0.02562 * 8 7 6 31 31 H 0.96999 * 120.00605 * 0.02562 * 13 12 11 32 32 H 0.97007 * 119.99669 * 179.97438 * 13 12 11 33 33 H 1.08005 * 119.96748 * 179.97438 * 17 15 11 34 34 H 1.07994 * 120.13873 * 180.02562 * 18 6 5 35 35 H 0.96999 * 120.00309 * 184.50294 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2748 1.1555 0.3389 5 6 4.6519 1.1484 0.3431 6 6 5.3709 -0.0026 0.0054 7 6 6.8530 0.0303 0.0213 8 6 7.5780 -1.1145 -0.3085 9 6 8.9573 -1.0855 -0.2992 10 9 9.6590 -2.1932 -0.6243 11 6 9.6289 0.0918 0.0516 12 6 11.1031 0.1246 0.0671 13 7 11.7810 0.4703 -1.0453 14 8 11.7069 -0.1602 1.0833 15 6 8.8983 1.2379 0.3874 16 9 9.5431 2.3755 0.7269 17 6 7.5193 1.2044 0.3712 18 6 4.7169 -1.1740 -0.3442 19 6 3.3112 -1.2098 -0.3601 20 6 2.6290 -2.3905 -0.7120 21 1 1.6243 -2.3372 -1.1045 22 6 3.2545 -3.6356 -0.5529 23 7 4.3033 -3.7460 0.2184 24 14 2.5881 -5.1363 -1.4435 25 1 1.4025 -4.7479 -2.2490 26 1 3.6366 -5.6859 -2.3402 27 1 2.1959 -6.1679 -0.4501 28 1 2.7402 2.0560 0.6029 29 1 5.1862 2.0478 0.6117 30 1 7.0594 -2.0233 -0.5755 31 1 11.2993 0.6979 -1.8558 32 1 12.7508 0.4923 -1.0350 33 1 6.9551 2.0881 0.6306 34 1 5.2847 -2.0556 -0.6024 35 1 4.7750 -4.5915 0.2777 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244676342.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:07 Heat of formation + Delta-G solvation = -79.260199 kcal Electronic energy + Delta-G solvation = -25958.770762 eV Core-core repulsion = 21749.319784 eV Total energy + Delta-G solvation = -4209.450978 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.21173 -50.17776 -40.99512 -40.12621 -38.74974 -36.94405 -35.86205 -34.88123 -33.41579 -32.05728 -31.29802 -30.34424 -27.58327 -25.98818 -24.32368 -23.15557 -22.51589 -21.96628 -19.73398 -19.26190 -19.20509 -18.53612 -18.23811 -18.11365 -17.02900 -16.98987 -16.77109 -16.57596 -16.47943 -15.90802 -15.53005 -15.42226 -15.41518 -14.94550 -14.57156 -14.49885 -14.17288 -13.97995 -13.65545 -13.47359 -13.39440 -13.11405 -13.02338 -13.01249 -12.72303 -12.43170 -12.14203 -11.81358 -11.47346 -11.40393 -11.19464 -10.87287 -10.49539 -9.91584 -9.51734 -9.03756 -8.79351 -6.53012 -0.71717 -0.11517 0.52974 0.99882 1.21430 1.39072 1.48606 1.51942 2.01105 2.06355 2.14403 2.28227 2.54318 2.62168 2.69216 3.18316 3.42318 3.61654 3.67018 3.69166 3.74030 4.03458 4.38767 4.40213 4.54590 4.62201 4.73412 4.88904 4.92761 5.04773 5.15645 5.28884 5.42893 5.57870 5.68839 5.75566 5.92191 6.01403 6.13511 6.16877 6.40454 6.64622 6.74786 6.98432 7.07471 8.06366 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013815 B = 0.003741 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.366053 B = 7482.448158 C = 9287.029189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C 0.303 3.697 3 C -0.200 4.200 4 C -0.026 4.026 5 C -0.217 4.217 6 C -0.028 4.028 7 C 0.050 3.950 8 C -0.156 4.156 9 C 0.161 3.839 10 F -0.129 7.129 11 C -0.222 4.222 12 C 0.575 3.425 13 N -0.816 5.816 14 O -0.572 6.572 15 C 0.165 3.835 16 F -0.124 7.124 17 C -0.145 4.145 18 C -0.148 4.148 19 C 0.126 3.874 20 C -0.460 4.460 21 H 0.069 0.931 22 C 0.051 3.949 23 N -0.784 5.784 24 Si 0.969 3.031 25 H -0.267 1.267 26 H -0.250 1.250 27 H -0.267 1.267 28 H 0.131 0.869 29 H 0.144 0.856 30 H 0.150 0.850 31 H 0.420 0.580 32 H 0.418 0.582 33 H 0.178 0.822 34 H 0.130 0.870 35 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.763 5.775 -4.955 15.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.210 5.210 2 C -0.006 4.006 3 C -0.206 4.206 4 C -0.046 4.046 5 C -0.236 4.236 6 C -0.029 4.029 7 C 0.050 3.950 8 C -0.175 4.175 9 C 0.141 3.859 10 F -0.108 7.108 11 C -0.227 4.227 12 C 0.358 3.642 13 N -0.380 5.380 14 O -0.451 6.451 15 C 0.144 3.856 16 F -0.102 7.102 17 C -0.164 4.164 18 C -0.167 4.167 19 C 0.121 3.879 20 C -0.487 4.487 21 H 0.087 0.913 22 C -0.170 4.170 23 N -0.407 5.407 24 Si 0.790 3.210 25 H -0.191 1.191 26 H -0.174 1.174 27 H -0.192 1.192 28 H 0.149 0.851 29 H 0.162 0.838 30 H 0.168 0.832 31 H 0.252 0.748 32 H 0.251 0.749 33 H 0.195 0.805 34 H 0.147 0.853 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.445 5.391 -4.096 14.168 hybrid contribution 0.298 -0.920 -0.568 1.122 sum 12.743 4.471 -4.665 14.288 Atomic orbital electron populations 1.81014 1.13395 1.11181 1.15448 1.26068 0.93047 0.90665 0.90797 1.17279 0.82881 0.98626 1.21792 1.20726 0.94176 0.95093 0.94609 1.20586 0.92853 0.98113 1.12090 1.18551 0.89730 0.94601 1.00024 1.18667 0.92808 0.91456 0.92109 1.21362 0.91103 1.01148 1.03887 1.17026 0.88981 0.81487 0.98406 1.91534 1.78918 1.50545 1.89770 1.19704 0.94305 0.94724 1.13966 1.17876 0.86571 0.75858 0.83912 1.43583 1.11881 1.69336 1.13176 1.90845 1.70386 1.49981 1.33879 1.16989 0.89810 0.80730 0.98022 1.91554 1.81818 1.47466 1.89364 1.21386 0.91152 1.00627 1.03192 1.21487 0.93340 0.97197 1.04695 1.18605 0.92100 0.90421 0.86817 1.19880 1.01571 0.91452 1.35801 0.91315 1.26615 0.94541 1.02865 0.93024 1.69676 1.15952 1.29824 1.25218 0.85313 0.79812 0.76795 0.79066 1.19134 1.17352 1.19159 0.85130 0.83834 0.83213 0.74809 0.74898 0.80507 0.85280 0.88655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -24.71 18.54 19.00 0.35 -24.35 16 2 C 0.30 13.52 14.28 88.33 1.26 14.78 16 3 C -0.20 -8.37 5.95 -19.55 -0.12 -8.48 16 4 C -0.03 -0.87 9.74 22.47 0.22 -0.65 16 5 C -0.22 -6.66 9.36 22.54 0.21 -6.45 16 6 C -0.03 -0.94 5.86 -20.13 -0.12 -1.06 16 7 C 0.05 1.42 5.88 -20.02 -0.12 1.31 16 8 C -0.16 -4.49 9.37 22.50 0.21 -4.28 16 9 C 0.16 4.40 7.28 22.63 0.16 4.57 16 10 F -0.13 -3.66 16.82 44.97 0.76 -2.90 16 11 C -0.22 -5.74 5.64 -19.99 -0.11 -5.85 16 12 C 0.57 14.92 6.79 86.67 0.59 15.51 16 13 N -0.82 -12.51 8.87 -175.87 -1.56 -14.07 16 14 O -0.57 -19.75 17.94 -4.01 -0.07 -19.83 16 15 C 0.16 3.96 7.28 22.63 0.16 4.12 16 16 F -0.12 -2.92 16.82 44.97 0.76 -2.16 16 17 C -0.15 -3.39 9.37 22.50 0.21 -3.18 16 18 C -0.15 -5.97 8.06 22.95 0.18 -5.79 16 19 C 0.13 5.64 5.74 -19.90 -0.11 5.52 16 20 C -0.46 -21.55 8.57 23.39 0.20 -21.35 16 21 H 0.07 3.37 7.38 -2.91 -0.02 3.35 16 22 C 0.05 2.16 5.16 85.35 0.44 2.60 16 23 N -0.78 -33.48 10.94 21.88 0.24 -33.24 16 24 Si 0.97 33.52 29.60 68.60 2.03 35.55 16 25 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 26 H -0.25 -7.96 7.11 99.48 0.71 -7.26 16 27 H -0.27 -9.09 7.11 99.48 0.71 -8.38 16 28 H 0.13 3.71 8.06 -2.91 -0.02 3.69 16 29 H 0.14 3.26 6.08 -2.91 -0.02 3.24 16 30 H 0.15 4.55 6.12 -2.91 -0.02 4.53 16 31 H 0.42 4.07 8.81 -92.71 -0.82 3.25 16 32 H 0.42 4.79 8.93 -92.70 -0.83 3.96 16 33 H 0.18 3.25 6.11 -2.91 -0.02 3.23 16 34 H 0.13 5.25 4.22 -2.91 -0.01 5.24 16 35 H 0.30 11.47 8.30 -92.71 -0.77 10.70 16 Total: -1.00 -58.44 329.17 5.38 -53.07 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -0.40 Total: 16.61 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 3.28 Total: -8.68 kcal Atomic # 7 Polarization: -70.69 SS G_CDS: -0.97 Total: -71.66 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.07 Total: -19.83 kcal Atomic # 9 Polarization: -6.57 SS G_CDS: 1.51 Total: -5.06 kcal Atomic # 14 Polarization: 33.52 SS G_CDS: 2.03 Total: 35.55 kcal Total: -58.44 5.38 -53.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244676342.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.194 kcal (2) G-P(sol) polarization free energy of solvation -58.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds