Wall clock time and date at job start Tue Mar 31 2020 15:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39070 * 120.56395 * 233.42774 * 3 2 1 5 5 C 1.39407 * 119.80652 * 179.97438 * 4 3 2 6 6 C 1.47954 * 119.50358 * 180.02562 * 5 4 3 7 7 C 1.39663 * 119.95356 * 359.71707 * 6 5 4 8 8 C 1.37872 * 120.04677 * 179.76598 * 7 6 5 9 9 F 1.35106 * 120.02271 * 180.25126 * 8 7 6 10 10 C 1.40055 * 119.95199 * 0.51182 * 8 7 6 11 11 C 1.47446 * 120.04615 * 179.76128 * 10 8 7 12 12 N 1.34772 * 119.99774 * 89.97987 * 11 10 8 13 13 O 1.21602 * 120.00476 * 269.97505 * 11 10 8 14 14 C 1.40054 * 119.90711 * 359.74564 * 10 8 7 15 15 F 1.35102 * 120.02671 * 179.97438 * 14 10 8 16 16 C 1.37875 * 119.95253 * 359.97438 * 14 10 8 17 17 C 1.40003 * 120.99199 * 0.02562 * 5 4 3 18 18 C 1.36006 * 121.19292 * 0.02562 * 17 5 4 19 19 C 1.41047 * 120.10658 * 359.95765 * 18 17 5 20 20 C 1.40441 * 120.48515 * 179.97438 * 19 18 17 21 21 H 1.07998 * 120.00344 * 150.02968 * 20 19 18 22 22 C 1.40357 * 120.00227 * 330.03511 * 20 19 18 23 23 N 1.30593 * 120.00462 * 161.92247 * 22 20 19 24 24 Si 1.86801 * 119.99979 * 341.92157 * 22 20 19 25 25 H 1.48499 * 109.47336 * 95.39285 * 24 22 20 26 26 H 1.48498 * 109.47433 * 215.39839 * 24 22 20 27 27 H 1.48506 * 109.46923 * 335.39619 * 24 22 20 28 28 H 1.08000 * 120.10114 * 0.25366 * 4 3 2 29 29 H 1.08008 * 119.97390 * 0.02562 * 7 6 5 30 30 H 0.97003 * 120.00585 * 0.02562 * 12 11 10 31 31 H 0.96997 * 120.00108 * 179.97438 * 12 11 10 32 32 H 1.08007 * 119.97550 * 180.02562 * 16 14 10 33 33 H 1.08001 * 119.40481 * 179.97438 * 17 5 4 34 34 H 1.08003 * 119.94971 * 179.97438 * 18 17 5 35 35 H 0.97003 * 120.00623 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2749 0.7145 0.9617 5 6 4.6689 0.7037 0.9472 6 6 5.4141 1.4650 1.9739 7 6 4.7200 2.1917 2.9438 8 6 5.4125 2.8979 3.9043 9 9 4.7406 3.5966 4.8454 10 6 6.8131 2.8949 3.9005 11 6 7.5558 3.6537 4.9235 12 7 7.8947 3.0631 6.0866 13 8 7.8626 4.8123 4.7179 14 6 7.5072 2.1698 2.9237 15 9 8.8582 2.1657 2.9174 16 6 6.8107 1.4603 1.9685 17 6 5.3742 -0.0167 -0.0242 18 6 4.7240 -0.7279 -0.9841 19 6 3.3140 -0.7508 -1.0145 20 6 2.6345 -1.4821 -2.0024 21 1 1.6643 -1.9058 -1.7892 22 6 3.2164 -1.6624 -3.2669 23 7 2.7826 -2.6077 -4.0566 24 14 4.6114 -0.5500 -3.8203 25 1 5.9120 -1.2051 -3.5297 26 1 4.4973 -0.3019 -5.2800 27 1 4.5337 0.7413 -3.0911 28 1 2.7456 1.2719 1.7203 29 1 3.6400 2.1970 2.9439 30 1 7.6504 2.1388 6.2506 31 1 8.3836 3.5622 6.7595 32 1 7.3456 0.9007 1.2153 33 1 6.4540 -0.0069 -0.0116 34 1 5.2882 -1.2761 -1.7240 35 1 3.1850 -2.7325 -4.9304 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244676940.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:11 Heat of formation + Delta-G solvation = -65.280388 kcal Electronic energy + Delta-G solvation = -25743.088209 eV Core-core repulsion = 21534.243442 eV Total energy + Delta-G solvation = -4208.844768 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.08486 -49.06064 -39.80691 -38.94042 -37.53425 -35.42826 -34.50647 -33.82351 -32.24776 -31.05089 -30.01352 -29.77659 -26.37741 -23.85893 -23.39248 -21.91533 -21.62867 -20.84034 -18.59102 -18.24974 -18.04846 -17.25894 -17.12417 -16.69997 -16.04110 -15.86529 -15.57067 -15.37150 -15.35932 -14.55309 -14.38589 -14.33859 -14.26223 -13.84882 -13.35193 -13.12733 -13.01911 -12.74476 -12.39371 -12.31852 -12.05703 -11.98072 -11.72240 -11.64445 -11.33945 -11.10796 -10.68094 -10.53215 -10.27303 -10.16479 -9.91326 -9.72453 -9.19592 -8.80274 -8.28043 -7.76391 -7.68041 -5.15144 0.61089 1.04622 1.74427 2.15836 2.34990 2.71366 2.85055 2.92050 3.24987 3.36306 3.49425 3.60045 3.74102 3.92747 4.12202 4.35339 4.58978 4.77709 4.82053 4.93773 5.05672 5.12087 5.42226 5.55236 5.73879 5.82516 5.91663 5.97964 6.05797 6.13013 6.33756 6.48031 6.52137 6.71422 6.76418 6.98581 7.06219 7.10464 7.27767 7.38628 7.59185 7.91598 8.00584 8.01409 8.49151 9.27898 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.018061 B = 0.003255 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.918928 B = 8600.416094 C = 9817.613467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C 0.292 3.708 3 C -0.164 4.164 4 C 0.023 3.977 5 C -0.229 4.229 6 C 0.101 3.899 7 C -0.196 4.196 8 C 0.176 3.824 9 F -0.130 7.130 10 C -0.255 4.255 11 C 0.582 3.418 12 N -0.844 5.844 13 O -0.530 6.530 14 C 0.176 3.824 15 F -0.130 7.130 16 C -0.194 4.194 17 C -0.020 4.020 18 C -0.233 4.233 19 C 0.123 3.877 20 C -0.376 4.376 21 H 0.103 0.897 22 C 0.075 3.925 23 N -0.750 5.750 24 Si 0.919 3.081 25 H -0.258 1.258 26 H -0.280 1.280 27 H -0.232 1.232 28 H 0.113 0.887 29 H 0.147 0.853 30 H 0.404 0.596 31 H 0.403 0.597 32 H 0.148 0.852 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.097 3.125 9.522 14.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.164 5.164 2 C -0.019 4.019 3 C -0.170 4.170 4 C 0.002 3.998 5 C -0.230 4.230 6 C 0.101 3.899 7 C -0.214 4.214 8 C 0.156 3.844 9 F -0.108 7.108 10 C -0.260 4.260 11 C 0.365 3.635 12 N -0.407 5.407 13 O -0.405 6.405 14 C 0.156 3.844 15 F -0.108 7.108 16 C -0.213 4.213 17 C -0.039 4.039 18 C -0.251 4.251 19 C 0.116 3.884 20 C -0.400 4.400 21 H 0.121 0.879 22 C -0.153 4.153 23 N -0.368 5.368 24 Si 0.742 3.258 25 H -0.184 1.184 26 H -0.207 1.207 27 H -0.155 1.155 28 H 0.131 0.869 29 H 0.164 0.836 30 H 0.233 0.767 31 H 0.235 0.765 32 H 0.165 0.835 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.394 3.689 8.987 12.839 hybrid contribution 1.147 0.015 0.123 1.154 sum 9.542 3.704 9.110 13.703 Atomic orbital electron populations 1.81085 1.12522 1.11939 1.10874 1.25591 0.92534 0.91936 0.91847 1.16640 0.83509 1.11132 1.05694 1.20758 0.92667 0.92666 0.93750 1.17521 0.91847 1.11659 1.01967 1.18515 0.91134 0.89473 0.90805 1.21124 1.01442 1.02267 0.96605 1.17040 0.87273 0.92352 0.87712 1.91529 1.79976 1.76552 1.62766 1.19393 0.92943 1.10478 1.03154 1.17825 0.77943 0.86025 0.81711 1.43806 1.60595 1.17589 1.18746 1.90843 1.53940 1.16851 1.78899 1.17039 0.76516 0.96148 0.94737 1.91525 1.28594 1.94806 1.95921 1.21108 0.94261 1.04775 1.01146 1.20454 0.98257 0.92551 0.92595 1.20634 0.93698 1.07807 1.02984 1.18528 0.91199 0.87981 0.90661 1.19967 1.04745 1.20543 0.94754 0.87867 1.26639 0.97832 0.94530 0.96330 1.69544 1.35390 1.22728 1.09170 0.86142 0.79157 0.82525 0.77930 1.18362 1.20702 1.15471 0.86950 0.83568 0.76705 0.76538 0.83485 0.87460 0.86878 0.88716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -10.65 18.54 41.84 0.78 -9.87 16 2 C 0.29 6.03 14.36 -22.47 -0.32 5.71 16 3 C -0.16 -3.18 5.93 -104.27 -0.62 -3.79 16 4 C 0.02 0.38 9.12 -38.84 -0.35 0.02 16 5 C -0.23 -3.61 5.88 -104.82 -0.62 -4.23 16 6 C 0.10 1.42 5.88 -104.85 -0.62 0.80 16 7 C -0.20 -2.60 9.37 -39.18 -0.37 -2.97 16 8 C 0.18 2.41 7.28 -39.03 -0.28 2.12 16 9 F -0.13 -1.81 16.82 2.25 0.04 -1.77 16 10 C -0.25 -3.51 5.64 -104.79 -0.59 -4.11 16 11 C 0.58 8.11 6.78 -12.51 -0.08 8.02 16 12 N -0.84 -7.65 8.87 30.44 0.27 -7.38 16 13 O -0.53 -9.45 17.94 5.28 0.09 -9.35 16 14 C 0.18 2.36 7.28 -39.03 -0.28 2.08 16 15 F -0.13 -1.77 16.82 2.25 0.04 -1.73 16 16 C -0.19 -2.53 9.37 -39.18 -0.37 -2.90 16 17 C -0.02 -0.32 9.29 -39.72 -0.37 -0.69 16 18 C -0.23 -4.23 7.11 -39.32 -0.28 -4.51 16 19 C 0.12 2.48 5.27 -104.61 -0.55 1.93 16 20 C -0.38 -8.32 9.01 -37.96 -0.34 -8.66 16 21 H 0.10 2.50 7.65 -52.49 -0.40 2.10 16 22 C 0.07 1.57 5.41 -17.28 -0.09 1.47 16 23 N -0.75 -16.26 13.92 55.57 0.77 -15.49 16 24 Si 0.92 16.37 24.52 -169.99 -4.17 12.20 16 25 H -0.26 -4.31 6.71 56.52 0.38 -3.93 16 26 H -0.28 -4.91 7.11 56.52 0.40 -4.51 16 27 H -0.23 -4.23 6.86 56.52 0.39 -3.84 16 28 H 0.11 1.60 6.11 -52.49 -0.32 1.28 16 29 H 0.15 1.76 6.12 -52.48 -0.32 1.44 16 30 H 0.40 2.64 8.81 -40.82 -0.36 2.28 16 31 H 0.40 2.89 8.93 -40.82 -0.36 2.53 16 32 H 0.15 1.69 6.10 -52.48 -0.32 1.37 16 33 H 0.11 1.42 6.07 -52.49 -0.32 1.10 16 34 H 0.11 1.99 4.75 -52.48 -0.25 1.74 16 35 H 0.30 5.74 8.29 -40.82 -0.34 5.41 16 LS Contribution 323.94 15.07 4.88 4.88 Total: -1.00 -25.96 323.94 -5.27 -31.23 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -1.83 Total: 6.97 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -6.14 Total: -9.69 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 1.82 Total: -32.74 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.35 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.08 Total: -3.50 kcal Atomic # 14 Polarization: 16.37 SS G_CDS: -4.17 Total: 12.20 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -25.96 -5.27 -31.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244676940.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.053 kcal (2) G-P(sol) polarization free energy of solvation -25.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds