Wall clock time and date at job start Tue Mar 31 2020 15:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39070 * 120.56395 * 233.42774 * 3 2 1 5 5 C 1.39407 * 119.80652 * 179.97438 * 4 3 2 6 6 C 1.47954 * 119.50358 * 180.02562 * 5 4 3 7 7 C 1.39663 * 119.95356 * 359.71707 * 6 5 4 8 8 C 1.37872 * 120.04677 * 179.76598 * 7 6 5 9 9 F 1.35106 * 120.02271 * 180.25126 * 8 7 6 10 10 C 1.40055 * 119.95199 * 0.51182 * 8 7 6 11 11 C 1.47446 * 120.04615 * 179.76128 * 10 8 7 12 12 N 1.34772 * 119.99774 * 89.97987 * 11 10 8 13 13 O 1.21602 * 120.00476 * 269.97505 * 11 10 8 14 14 C 1.40054 * 119.90711 * 359.74564 * 10 8 7 15 15 F 1.35102 * 120.02671 * 179.97438 * 14 10 8 16 16 C 1.37875 * 119.95253 * 359.97438 * 14 10 8 17 17 C 1.40003 * 120.99199 * 0.02562 * 5 4 3 18 18 C 1.36006 * 121.19292 * 0.02562 * 17 5 4 19 19 C 1.41047 * 120.10658 * 359.95765 * 18 17 5 20 20 C 1.40441 * 120.48515 * 179.97438 * 19 18 17 21 21 H 1.07998 * 120.00344 * 150.02968 * 20 19 18 22 22 C 1.40357 * 120.00227 * 330.03511 * 20 19 18 23 23 N 1.30593 * 120.00462 * 161.92247 * 22 20 19 24 24 Si 1.86801 * 119.99979 * 341.92157 * 22 20 19 25 25 H 1.48499 * 109.47336 * 95.39285 * 24 22 20 26 26 H 1.48498 * 109.47433 * 215.39839 * 24 22 20 27 27 H 1.48506 * 109.46923 * 335.39619 * 24 22 20 28 28 H 1.08000 * 120.10114 * 0.25366 * 4 3 2 29 29 H 1.08008 * 119.97390 * 0.02562 * 7 6 5 30 30 H 0.97003 * 120.00585 * 0.02562 * 12 11 10 31 31 H 0.96997 * 120.00108 * 179.97438 * 12 11 10 32 32 H 1.08007 * 119.97550 * 180.02562 * 16 14 10 33 33 H 1.08001 * 119.40481 * 179.97438 * 17 5 4 34 34 H 1.08003 * 119.94971 * 179.97438 * 18 17 5 35 35 H 0.97003 * 120.00623 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2749 0.7145 0.9617 5 6 4.6689 0.7037 0.9472 6 6 5.4141 1.4650 1.9739 7 6 4.7200 2.1917 2.9438 8 6 5.4125 2.8979 3.9043 9 9 4.7406 3.5966 4.8454 10 6 6.8131 2.8949 3.9005 11 6 7.5558 3.6537 4.9235 12 7 7.8947 3.0631 6.0866 13 8 7.8626 4.8123 4.7179 14 6 7.5072 2.1698 2.9237 15 9 8.8582 2.1657 2.9174 16 6 6.8107 1.4603 1.9685 17 6 5.3742 -0.0167 -0.0242 18 6 4.7240 -0.7279 -0.9841 19 6 3.3140 -0.7508 -1.0145 20 6 2.6345 -1.4821 -2.0024 21 1 1.6643 -1.9058 -1.7892 22 6 3.2164 -1.6624 -3.2669 23 7 2.7826 -2.6077 -4.0566 24 14 4.6114 -0.5500 -3.8203 25 1 5.9120 -1.2051 -3.5297 26 1 4.4973 -0.3019 -5.2800 27 1 4.5337 0.7413 -3.0911 28 1 2.7456 1.2719 1.7203 29 1 3.6400 2.1970 2.9439 30 1 7.6504 2.1388 6.2506 31 1 8.3836 3.5622 6.7595 32 1 7.3456 0.9007 1.2153 33 1 6.4540 -0.0069 -0.0116 34 1 5.2882 -1.2761 -1.7240 35 1 3.1850 -2.7325 -4.9304 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244676940.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:10 Heat of formation + Delta-G solvation = -80.823783 kcal Electronic energy + Delta-G solvation = -25743.762221 eV Core-core repulsion = 21534.243442 eV Total energy + Delta-G solvation = -4209.518780 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.15643 -50.12675 -40.93565 -40.20087 -38.82621 -37.05108 -35.94051 -34.84183 -33.54917 -32.35418 -31.22528 -31.05484 -27.73673 -25.11531 -24.63197 -23.22527 -22.90453 -21.97263 -19.82008 -19.64119 -19.14961 -18.37278 -18.14426 -17.96270 -17.34472 -16.93908 -16.72246 -16.58753 -16.42798 -15.96168 -15.57485 -15.50898 -15.37738 -15.17116 -14.81495 -14.57497 -14.34505 -14.00326 -13.80721 -13.67824 -13.47985 -13.28884 -13.01996 -12.96711 -12.76032 -12.41382 -12.06603 -11.92492 -11.59884 -11.42758 -11.09416 -10.84717 -10.45997 -9.85907 -9.67185 -9.16749 -9.12884 -6.71234 -0.53899 -0.02464 0.28118 0.81450 1.26846 1.30468 1.45754 1.55161 1.96603 1.99826 2.11271 2.35906 2.47986 2.62278 2.68414 3.24509 3.41330 3.46627 3.62063 3.75058 3.81198 4.02820 4.16294 4.33153 4.60375 4.63309 4.69052 4.75473 4.80534 4.92152 5.03396 5.16987 5.36008 5.50739 5.67739 5.69399 5.71898 5.86684 5.93169 6.11133 6.20540 6.40716 6.50581 6.87904 7.10888 7.87321 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.018061 B = 0.003255 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.918928 B = 8600.416094 C = 9817.613467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C 0.300 3.700 3 C -0.186 4.186 4 C 0.024 3.976 5 C -0.204 4.204 6 C 0.089 3.911 7 C -0.181 4.181 8 C 0.169 3.831 9 F -0.132 7.132 10 C -0.246 4.246 11 C 0.575 3.425 12 N -0.818 5.818 13 O -0.576 6.576 14 C 0.171 3.829 15 F -0.129 7.129 16 C -0.174 4.174 17 C -0.011 4.011 18 C -0.243 4.243 19 C 0.124 3.876 20 C -0.430 4.430 21 H 0.058 0.942 22 C 0.047 3.953 23 N -0.802 5.802 24 Si 0.965 3.035 25 H -0.233 1.233 26 H -0.279 1.279 27 H -0.236 1.236 28 H 0.138 0.862 29 H 0.160 0.840 30 H 0.420 0.580 31 H 0.416 0.584 32 H 0.171 0.829 33 H 0.148 0.852 34 H 0.121 0.879 35 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.470 4.607 11.712 18.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.199 5.199 2 C -0.010 4.010 3 C -0.191 4.191 4 C 0.003 3.997 5 C -0.206 4.206 6 C 0.089 3.911 7 C -0.200 4.200 8 C 0.149 3.851 9 F -0.110 7.110 10 C -0.251 4.251 11 C 0.358 3.642 12 N -0.382 5.382 13 O -0.455 6.455 14 C 0.151 3.849 15 F -0.108 7.108 16 C -0.192 4.192 17 C -0.030 4.030 18 C -0.262 4.262 19 C 0.119 3.881 20 C -0.456 4.456 21 H 0.076 0.924 22 C -0.175 4.175 23 N -0.424 5.424 24 Si 0.785 3.215 25 H -0.156 1.156 26 H -0.206 1.206 27 H -0.159 1.159 28 H 0.156 0.844 29 H 0.178 0.822 30 H 0.251 0.749 31 H 0.249 0.751 32 H 0.188 0.812 33 H 0.165 0.835 34 H 0.138 0.862 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 11.776 5.129 11.238 17.066 hybrid contribution 0.301 -0.216 -0.074 0.377 sum 12.076 4.913 11.164 17.164 Atomic orbital electron populations 1.81060 1.13487 1.13283 1.12114 1.25964 0.92985 0.91068 0.90954 1.16866 0.82833 1.12458 1.06983 1.21015 0.93244 0.91952 0.93454 1.17761 0.91558 1.09844 1.01405 1.18373 0.91524 0.90331 0.90920 1.21280 1.02240 1.00830 0.95613 1.17051 0.87226 0.92817 0.88046 1.91533 1.79987 1.76651 1.62852 1.19594 0.93178 1.09335 1.03029 1.17966 0.77918 0.85535 0.82771 1.43620 1.58918 1.18291 1.17388 1.90835 1.56063 1.18668 1.79962 1.17037 0.76620 0.96460 0.94826 1.91538 1.28510 1.94812 1.95902 1.21302 0.93764 1.03448 1.00725 1.20869 1.00335 0.90743 0.91026 1.20763 0.92590 1.08696 1.04123 1.18697 0.92452 0.87017 0.89975 1.19747 1.04085 1.24804 0.96982 0.92386 1.27291 0.99495 0.95047 0.95685 1.69575 1.37836 1.24785 1.10173 0.85488 0.77860 0.80739 0.77447 1.15642 1.20565 1.15909 0.84440 0.82220 0.74895 0.75118 0.81217 0.83496 0.86170 0.88037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -23.70 18.54 19.00 0.35 -23.35 16 2 C 0.30 12.78 14.36 88.33 1.27 14.05 16 3 C -0.19 -7.13 5.93 -19.64 -0.12 -7.25 16 4 C 0.02 0.73 9.12 22.75 0.21 0.93 16 5 C -0.20 -5.57 5.88 -19.99 -0.12 -5.69 16 6 C 0.09 2.05 5.88 -20.01 -0.12 1.93 16 7 C -0.18 -4.01 9.37 22.53 0.21 -3.80 16 8 C 0.17 3.95 7.28 22.62 0.16 4.12 16 9 F -0.13 -3.25 16.82 44.97 0.76 -2.49 16 10 C -0.25 -5.86 5.64 -19.97 -0.11 -5.97 16 11 C 0.57 14.27 6.78 86.67 0.59 14.86 16 12 N -0.82 -11.99 8.87 -175.88 -1.56 -13.55 16 13 O -0.58 -19.34 17.94 -4.04 -0.07 -19.42 16 14 C 0.17 3.81 7.28 22.62 0.16 3.98 16 15 F -0.13 -2.97 16.82 44.97 0.76 -2.21 16 16 C -0.17 -3.58 9.37 22.53 0.21 -3.37 16 17 C -0.01 -0.31 9.29 22.18 0.21 -0.11 16 18 C -0.24 -8.32 7.11 22.44 0.16 -8.16 16 19 C 0.12 5.09 5.27 -19.86 -0.10 4.98 16 20 C -0.43 -20.35 9.01 23.32 0.21 -20.14 16 21 H 0.06 3.14 7.65 -2.91 -0.02 3.12 16 22 C 0.05 2.08 5.41 85.39 0.46 2.54 16 23 N -0.80 -37.21 13.92 21.90 0.30 -36.90 16 24 Si 0.97 33.21 24.52 68.60 1.68 34.89 16 25 H -0.23 -6.96 6.71 99.48 0.67 -6.29 16 26 H -0.28 -9.40 7.11 99.48 0.71 -8.70 16 27 H -0.24 -8.15 6.86 99.48 0.68 -7.47 16 28 H 0.14 3.44 6.11 -2.91 -0.02 3.42 16 29 H 0.16 3.12 6.12 -2.91 -0.02 3.10 16 30 H 0.42 3.79 8.81 -92.71 -0.82 2.97 16 31 H 0.42 4.59 8.93 -92.71 -0.83 3.76 16 32 H 0.17 2.75 6.10 -2.91 -0.02 2.73 16 33 H 0.15 2.91 6.07 -2.91 -0.02 2.89 16 34 H 0.12 3.95 4.75 -2.91 -0.01 3.93 16 35 H 0.31 12.49 8.29 -92.71 -0.77 11.72 16 Total: -1.00 -59.94 323.94 5.04 -54.90 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -0.46 Total: 15.20 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 3.28 Total: -7.07 kcal Atomic # 7 Polarization: -72.90 SS G_CDS: -0.90 Total: -73.80 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.07 Total: -19.42 kcal Atomic # 9 Polarization: -6.21 SS G_CDS: 1.51 Total: -4.70 kcal Atomic # 14 Polarization: 33.21 SS G_CDS: 1.68 Total: 34.89 kcal Total: -59.94 5.04 -54.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244676940.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.928 kcal (2) G-P(sol) polarization free energy of solvation -59.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds