Wall clock time and date at job start Tue Mar 31 2020 15:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35897 * 117.00093 * 2 1 4 4 C 1.38751 * 120.05772 * 0.02562 * 3 2 1 5 5 C 1.38120 * 119.94502 * 180.02562 * 4 3 2 6 6 C 1.50704 * 119.96969 * 179.97438 * 5 4 3 7 7 F 1.39890 * 109.47464 * 359.97438 * 6 5 4 8 8 F 1.39902 * 109.47022 * 120.00060 * 6 5 4 9 9 F 1.39901 * 109.46979 * 239.99243 * 6 5 4 10 10 C 1.38288 * 120.05613 * 0.02562 * 5 4 3 11 11 C 1.38239 * 120.11007 * 0.02562 * 10 5 4 12 12 C 1.50706 * 119.97114 * 179.97438 * 11 10 5 13 13 F 1.39905 * 109.47082 * 0.02562 * 12 11 10 14 14 F 1.39898 * 109.46839 * 120.00166 * 12 11 10 15 15 F 1.39896 * 109.47170 * 240.00206 * 12 11 10 16 16 C 1.38166 * 120.05805 * 359.68359 * 11 10 5 17 17 C 1.50700 * 120.03143 * 180.29549 * 16 11 10 18 18 C 1.50699 * 109.47204 * 270.31953 * 17 16 11 19 19 H 1.08005 * 119.99869 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00175 * 179.97438 * 18 17 16 21 21 N 1.31508 * 119.99860 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00064 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47197 * 90.00129 * 22 20 18 24 24 H 1.48502 * 109.47195 * 210.00269 * 22 20 18 25 25 H 1.48500 * 109.46887 * 329.99739 * 22 20 18 26 26 H 1.09001 * 109.47103 * 300.00408 * 1 2 3 27 27 H 1.09004 * 109.47054 * 59.99912 * 1 2 3 28 28 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 29 29 H 1.08005 * 120.02580 * 359.97386 * 4 3 2 30 30 H 1.08004 * 119.94107 * 179.97438 * 10 5 4 31 31 H 1.09001 * 109.46908 * 30.32299 * 17 16 11 32 32 H 1.09000 * 109.47163 * 150.31506 * 17 16 11 33 33 H 0.97003 * 120.00547 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9210 3.6047 0.0000 6 6 1.1021 4.8698 0.0000 7 9 -0.2585 4.5446 0.0000 8 9 1.4027 5.6199 1.1420 9 9 1.4020 5.6194 -1.1425 10 6 3.3021 3.6757 -0.0016 11 6 4.0560 2.5170 -0.0032 12 6 5.5609 2.5980 -0.0055 13 9 5.9557 3.9402 -0.0051 14 9 6.0638 1.9641 1.1357 15 9 6.0602 1.9650 -1.1488 16 6 3.4312 1.2847 0.0034 17 6 4.2537 0.0220 0.0084 18 6 4.5328 -0.4013 -1.4108 19 1 4.1522 0.1852 -2.2340 20 6 5.2740 -1.5373 -1.6583 21 7 5.7370 -2.2516 -0.6559 22 14 5.6205 -2.0616 -3.4173 23 1 6.8852 -1.4360 -3.8803 24 1 5.7487 -3.5398 -3.4772 25 1 4.5031 -1.6258 -4.2929 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2129 2.3203 0.0005 30 1 3.7924 4.6380 -0.0024 31 1 5.1960 0.2042 0.5252 32 1 3.7046 -0.7673 0.5217 33 1 6.2582 -3.0510 -0.8299 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250057461.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:20 Heat of formation + Delta-G solvation = -329.705410 kcal Electronic energy + Delta-G solvation = -29319.669077 eV Core-core repulsion = 24094.439264 eV Total energy + Delta-G solvation = -5225.229813 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.21913 -51.12237 -48.73010 -48.67109 -48.66307 -48.47111 -41.53206 -38.81122 -35.78566 -33.97358 -32.18962 -30.03653 -28.51007 -27.18091 -26.70973 -24.57456 -23.13580 -22.36111 -20.27126 -19.76155 -19.53947 -19.36873 -19.22375 -18.54687 -18.01652 -17.63163 -17.18999 -16.97799 -16.66884 -16.15100 -15.57120 -15.47473 -15.41684 -15.39269 -15.10383 -15.05222 -14.85688 -14.82023 -14.79136 -14.68379 -14.59424 -14.46077 -14.01966 -13.92021 -13.61893 -13.48603 -13.01944 -12.83435 -12.67980 -12.36104 -12.27607 -12.19269 -11.62916 -11.55774 -10.55727 -10.40345 -9.38539 -8.16957 -6.26140 -0.40976 -0.07108 1.40220 1.41831 1.45837 1.51301 1.68719 2.07490 2.30034 2.44041 2.54993 2.70077 3.05649 3.16524 3.21595 3.34177 3.48497 3.67568 3.75661 3.88498 4.01693 4.31090 4.40644 4.42024 4.70635 4.74536 4.80879 4.90487 5.15024 5.38071 5.54754 5.74255 6.11803 6.35500 6.80654 7.39531 8.93683 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.013496 B = 0.005307 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.144132 B = 5275.239482 C = 6393.057474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.319 6.319 3 C 0.119 3.881 4 C -0.124 4.124 5 C -0.169 4.169 6 C 0.527 3.473 7 F -0.171 7.171 8 F -0.173 7.173 9 F -0.174 7.174 10 C -0.057 4.057 11 C -0.166 4.166 12 C 0.514 3.486 13 F -0.173 7.173 14 F -0.181 7.181 15 F -0.169 7.169 16 C -0.018 4.018 17 C 0.047 3.953 18 C -0.505 4.505 19 H 0.052 0.948 20 C 0.012 3.988 21 N -0.927 5.927 22 Si 0.954 3.046 23 H -0.276 1.276 24 H -0.280 1.280 25 H -0.265 1.265 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.116 0.884 29 H 0.178 0.822 30 H 0.165 0.835 31 H 0.024 0.976 32 H 0.019 0.981 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.435 12.853 2.046 17.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.232 6.232 3 C 0.073 3.927 4 C -0.142 4.142 5 C -0.170 4.170 6 C 0.473 3.527 7 F -0.152 7.152 8 F -0.154 7.154 9 F -0.156 7.156 10 C -0.075 4.075 11 C -0.168 4.168 12 C 0.460 3.540 13 F -0.154 7.154 14 F -0.163 7.163 15 F -0.150 7.150 16 C -0.019 4.019 17 C 0.010 3.990 18 C -0.543 4.543 19 H 0.070 0.930 20 C -0.187 4.187 21 N -0.567 5.567 22 Si 0.779 3.221 23 H -0.201 1.201 24 H -0.205 1.205 25 H -0.189 1.189 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.134 0.866 29 H 0.195 0.805 30 H 0.182 0.818 31 H 0.042 0.958 32 H 0.037 0.963 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.253 12.535 2.085 16.974 hybrid contribution 0.515 -0.404 -0.683 0.946 sum -10.738 12.131 1.402 16.262 Atomic orbital electron populations 1.23505 0.76099 1.05984 1.02773 1.86297 1.23623 1.25322 1.87966 1.18524 0.90721 0.85479 0.98017 1.21351 1.02194 0.89639 1.01060 1.19549 0.93677 0.92735 1.11068 1.17770 0.77690 0.83338 0.73892 1.93165 1.33288 1.92495 1.96227 1.93233 1.92991 1.78266 1.50930 1.93233 1.93020 1.78311 1.51006 1.20635 0.92348 0.98316 0.96232 1.19500 0.91248 0.94577 1.11473 1.18064 0.88553 0.73298 0.74106 1.93135 1.92372 1.33573 1.96308 1.93157 1.89266 1.82250 1.51597 1.93302 1.89092 1.82070 1.50580 1.19852 0.92958 0.95935 0.93193 1.18277 0.93885 0.89185 0.97653 1.21026 1.32865 1.09201 0.91230 0.92962 1.25716 0.95537 0.96420 1.00997 1.70058 1.36887 1.17143 1.32599 0.85607 0.78833 0.77443 0.80209 1.20122 1.20527 1.18926 0.90557 0.91079 0.86561 0.80484 0.81753 0.95819 0.96303 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.81 113.37 1.11 1.33 16 2 O -0.32 -11.21 9.54 -92.39 -0.88 -12.10 16 3 C 0.12 4.18 6.66 22.51 0.15 4.33 16 4 C -0.12 -3.30 8.42 22.36 0.19 -3.11 16 5 C -0.17 -4.41 5.37 -19.88 -0.11 -4.52 16 6 C 0.53 11.65 3.32 71.24 0.24 11.88 16 7 F -0.17 -3.43 15.97 44.97 0.72 -2.72 16 8 F -0.17 -3.81 17.24 44.97 0.78 -3.03 16 9 F -0.17 -3.97 17.24 44.97 0.78 -3.19 16 10 C -0.06 -1.67 8.98 22.28 0.20 -1.47 16 11 C -0.17 -6.15 5.37 -19.88 -0.11 -6.25 16 12 C 0.51 19.92 2.81 71.24 0.20 20.12 16 13 F -0.17 -5.60 15.97 44.97 0.72 -4.88 16 14 F -0.18 -7.53 15.31 44.97 0.69 -6.84 16 15 F -0.17 -7.58 15.27 44.97 0.69 -6.89 16 16 C -0.02 -0.77 5.05 -19.77 -0.10 -0.87 16 17 C 0.05 2.42 4.19 29.10 0.12 2.54 16 18 C -0.51 -28.00 7.69 25.60 0.20 -27.81 16 19 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 20 C 0.01 0.66 5.46 84.66 0.46 1.12 16 21 N -0.93 -55.33 13.29 21.45 0.28 -55.04 16 22 Si 0.95 44.32 29.54 68.60 2.03 46.35 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 25 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 26 H 0.08 1.24 7.66 -2.39 -0.02 1.22 16 27 H 0.07 1.25 7.66 -2.38 -0.02 1.23 16 28 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.18 3.44 5.40 -2.91 -0.02 3.42 16 30 H 0.16 3.98 7.15 -2.91 -0.02 3.96 16 31 H 0.02 1.31 5.52 -2.39 -0.01 1.30 16 32 H 0.02 1.05 7.53 -2.39 -0.02 1.04 16 33 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -64.32 308.92 9.55 -54.77 By element: Atomic # 1 Polarization: -4.93 SS G_CDS: 1.20 Total: -3.72 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 2.55 Total: -2.71 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: 0.28 Total: -55.04 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -0.88 Total: -12.10 kcal Atomic # 9 Polarization: -31.91 SS G_CDS: 4.36 Total: -27.55 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -64.32 9.55 -54.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057461.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -274.936 kcal (2) G-P(sol) polarization free energy of solvation -64.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -339.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -329.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds