Wall clock time and date at job start Tue Mar 31 2020 14:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86803 * 120.00034 * 2 1 4 4 H 1.48499 * 109.47014 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46844 * 299.99095 * 3 2 1 6 6 H 1.48495 * 109.47582 * 59.99569 * 3 2 1 7 7 C 1.40028 * 120.00288 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00052 * 179.97438 * 7 2 1 9 9 C 1.41320 * 119.99503 * 0.02562 * 7 2 1 10 10 C 1.40589 * 119.77900 * 179.97438 * 9 7 2 11 11 C 1.38348 * 119.14317 * 180.02562 * 10 9 7 12 12 C 1.38636 * 118.68171 * 359.97438 * 11 10 9 13 13 C 1.39756 * 119.49229 * 0.02562 * 12 11 10 14 14 N 1.38829 * 119.58351 * 179.97438 * 13 12 11 15 15 C 1.46496 * 119.99935 * 359.97438 * 14 13 12 16 16 C 1.50706 * 109.46989 * 180.02562 * 15 14 13 17 17 C 1.33380 * 125.20446 * 89.71456 * 16 15 14 18 18 C 1.38424 * 114.91979 * 179.85799 * 17 16 15 19 19 C 1.33387 * 114.92317 * 0.43559 * 18 17 16 20 20 C 1.50699 * 125.20906 * 179.75013 * 19 18 17 21 21 F 1.39895 * 109.47481 * 89.99469 * 20 19 18 22 22 F 1.39894 * 109.47143 * 209.99896 * 20 19 18 23 23 F 1.39908 * 109.46511 * 329.99590 * 20 19 18 24 24 S 1.75886 * 109.59281 * 359.76596 * 19 18 17 25 25 N 1.31978 * 120.83103 * 0.24841 * 13 12 11 26 26 H 0.97002 * 119.99452 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.42919 * 0.02562 * 10 9 7 28 28 H 1.08003 * 120.66145 * 179.97438 * 11 10 9 29 29 H 1.08006 * 120.25443 * 180.02562 * 12 11 10 30 30 H 0.97000 * 119.99632 * 179.97438 * 14 13 12 31 31 H 1.09003 * 109.47572 * 60.00152 * 15 14 13 32 32 H 1.09004 * 109.47418 * 299.99461 * 15 14 13 33 33 H 1.08001 * 122.54115 * 0.02562 * 17 16 15 34 34 H 1.08004 * 122.54250 * 180.19862 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.7014 1.3464 0.0006 5 1 1.8828 2.3963 -1.2127 6 1 1.8827 2.3966 1.2124 7 6 2.0076 -1.2126 0.0005 8 1 3.0876 -1.2126 0.0001 9 6 1.3010 -2.4365 0.0005 10 6 2.0086 -3.6513 0.0005 11 6 1.3035 -4.8417 0.0000 12 6 -0.0820 -4.7944 0.0000 13 6 -0.7281 -3.5551 0.0000 14 7 -2.1155 -3.5055 -0.0005 15 6 -2.8928 -4.7472 -0.0016 16 6 -4.3637 -4.4191 -0.0026 17 6 -5.1122 -4.2459 -1.0930 18 6 -6.4426 -3.9537 -0.8468 19 6 -6.7726 -3.8806 0.4436 20 6 -8.1498 -3.5724 0.9721 21 9 -8.8644 -4.7641 1.1348 22 9 -8.0411 -2.9218 2.2057 23 9 -8.8225 -2.7452 0.0663 24 16 -5.3543 -4.1984 1.4340 25 7 -0.0359 -2.4314 -0.0049 26 1 -0.4849 0.8401 -0.0004 27 1 3.0886 -3.6553 0.0010 28 1 1.8222 -5.7890 -0.0004 29 1 -0.6577 -5.7082 0.0000 30 1 -2.5701 -2.6487 -0.0001 31 1 -2.6505 -5.3285 0.8881 32 1 -2.6498 -5.3273 -0.8919 33 1 -4.7112 -4.3301 -2.0922 34 1 -7.1585 -3.7930 -1.6394 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308502107.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:11 Heat of formation + Delta-G solvation = -74.488363 kcal Electronic energy + Delta-G solvation = -23887.350330 eV Core-core repulsion = 19690.089920 eV Total energy + Delta-G solvation = -4197.260409 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.055 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.40289 -47.92980 -47.89327 -38.69471 -38.08051 -35.29048 -33.38199 -31.52832 -30.37306 -29.07598 -27.06496 -25.39724 -24.37587 -23.09585 -21.52952 -20.52344 -20.07415 -19.02969 -18.76213 -17.90503 -17.39544 -16.58550 -16.22666 -15.19610 -14.92032 -14.78731 -14.74794 -14.59582 -14.32879 -14.26516 -14.04900 -14.04713 -13.92961 -13.50445 -13.07741 -12.93367 -12.64419 -12.48061 -12.33104 -11.86766 -11.79466 -11.24253 -11.05262 -11.00190 -10.66093 -10.50595 -9.96492 -9.57111 -9.27061 -8.97956 -8.78505 -7.96723 -7.56516 -6.62506 -6.36795 -4.51414 0.32241 1.01629 1.54439 2.24837 2.40837 2.83060 3.10327 3.14461 3.18275 3.25669 3.44189 3.91992 3.96162 4.09613 4.16854 4.54042 4.79918 4.97137 5.10323 5.41222 5.62565 5.69877 5.86256 6.00387 6.08846 6.10784 6.49329 6.78630 6.82720 6.86985 7.20647 7.52459 7.74007 7.85152 8.11252 8.28255 8.58228 8.75511 9.05544 10.19227 10.35767 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.016462 B = 0.002820 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.523450 B = 9926.817420 C =11111.613698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.432 4.432 8 H 0.084 0.916 9 C 0.292 3.708 10 C -0.314 4.314 11 C -0.031 4.031 12 C -0.369 4.369 13 C 0.411 3.589 14 N -0.736 5.736 15 C 0.208 3.792 16 C -0.155 4.155 17 C -0.134 4.134 18 C -0.055 4.055 19 C -0.321 4.321 20 C 0.545 3.455 21 F -0.173 7.173 22 F -0.173 7.173 23 F -0.171 7.171 24 S 0.204 5.796 25 N -0.530 5.530 26 H 0.269 0.731 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.398 0.602 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.155 0.845 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.022 -6.807 0.049 16.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.336 5.336 2 C -0.154 4.154 3 Si 0.729 3.271 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.464 4.464 8 H 0.102 0.898 9 C 0.165 3.835 10 C -0.337 4.337 11 C -0.056 4.056 12 C -0.395 4.395 13 C 0.172 3.828 14 N -0.375 5.375 15 C 0.081 3.919 16 C -0.274 4.274 17 C -0.164 4.164 18 C -0.089 4.089 19 C -0.439 4.439 20 C 0.489 3.511 21 F -0.155 7.155 22 F -0.155 7.155 23 F -0.152 7.152 24 S 0.472 5.528 25 N -0.251 5.251 26 H 0.081 0.919 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.233 0.767 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.172 0.828 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -15.391 -6.131 1.662 16.650 hybrid contribution 0.055 0.325 -1.472 1.508 sum -15.336 -5.806 0.190 16.400 Atomic orbital electron populations 1.70153 1.07165 1.27329 1.28971 1.26057 0.94864 1.00968 0.93539 0.86319 0.80914 0.81371 0.78478 1.18422 1.19920 1.19917 1.19637 0.94225 0.89359 1.43200 0.89782 1.18204 0.86788 0.91899 0.86611 1.21557 0.98494 0.93459 1.20185 1.20595 0.93406 0.96419 0.95137 1.20583 0.94701 0.95297 1.28940 1.18436 0.83773 0.90408 0.90211 1.44093 1.02790 1.06063 1.84538 1.19513 0.81568 0.88489 1.02338 1.25076 1.00676 1.05724 0.95973 1.20168 0.92309 1.03555 1.00390 1.20079 0.97153 0.96782 0.94844 1.24660 0.97735 1.21308 1.00213 1.17203 0.84155 0.74415 0.75318 1.93233 1.80155 1.46660 1.95411 1.93227 1.96223 1.81782 1.44233 1.93214 1.81976 1.72693 1.67334 1.84539 0.95629 1.65934 1.06713 1.68181 1.07718 1.24285 1.24922 0.91934 0.88628 0.88851 0.89204 0.76662 0.91514 0.90412 0.82780 0.83137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.77 11.46 55.55 0.64 -18.13 16 2 C 0.07 1.79 5.50 -17.34 -0.10 1.70 16 3 Si 0.90 18.53 29.56 -169.99 -5.02 13.50 16 4 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 5 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.43 -11.55 9.14 -37.74 -0.34 -11.89 16 8 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 9 C 0.29 7.98 6.55 -85.00 -0.56 7.43 16 10 C -0.31 -7.78 9.83 -38.65 -0.38 -8.16 16 11 C -0.03 -0.70 10.15 -39.39 -0.40 -1.10 16 12 C -0.37 -8.15 9.34 -38.87 -0.36 -8.51 16 13 C 0.41 9.67 7.65 -155.31 -1.19 8.48 16 14 N -0.74 -13.97 5.71 -61.57 -0.35 -14.32 16 15 C 0.21 2.96 5.37 -5.19 -0.03 2.94 16 16 C -0.16 -1.89 5.88 -36.00 -0.21 -2.10 16 17 C -0.13 -1.44 10.05 -41.21 -0.41 -1.85 16 18 C -0.05 -0.56 9.70 -41.21 -0.40 -0.95 16 19 C -0.32 -3.57 5.95 -36.00 -0.21 -3.78 16 20 C 0.55 5.97 3.52 36.01 0.13 6.10 16 21 F -0.17 -1.88 17.30 2.25 0.04 -1.84 16 22 F -0.17 -2.02 17.06 2.25 0.04 -1.99 16 23 F -0.17 -1.85 16.93 2.25 0.04 -1.81 16 24 S 0.20 2.39 23.04 -107.50 -2.48 -0.09 16 25 N -0.53 -14.32 7.89 -10.33 -0.08 -14.41 16 26 H 0.27 6.43 8.29 -40.82 -0.34 6.09 16 27 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 28 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 29 H 0.09 1.72 6.68 -52.48 -0.35 1.37 16 30 H 0.40 7.75 8.58 -40.82 -0.35 7.40 16 31 H 0.07 0.93 7.92 -51.93 -0.41 0.52 16 32 H 0.08 1.05 7.92 -51.93 -0.41 0.64 16 33 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.15 1.20 7.99 -52.48 -0.42 0.78 16 LS Contribution 328.29 15.07 4.95 4.95 Total: -1.00 -28.84 328.29 -9.46 -38.30 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -2.76 Total: 7.56 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -4.47 Total: -11.72 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.20 Total: -46.85 kcal Atomic # 9 Polarization: -5.76 SS G_CDS: 0.12 Total: -5.65 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.02 Total: 13.50 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -2.48 Total: -0.09 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.84 -9.46 -38.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308502107.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.191 kcal (2) G-P(sol) polarization free energy of solvation -28.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds