Wall clock time and date at job start Tue Mar 31 2020 14:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86803 * 120.00034 * 2 1 4 4 H 1.48499 * 109.47014 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46844 * 299.99095 * 3 2 1 6 6 H 1.48495 * 109.47582 * 59.99569 * 3 2 1 7 7 C 1.40028 * 120.00288 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00052 * 179.97438 * 7 2 1 9 9 C 1.41320 * 119.99503 * 0.02562 * 7 2 1 10 10 C 1.40589 * 119.77900 * 179.97438 * 9 7 2 11 11 C 1.38348 * 119.14317 * 180.02562 * 10 9 7 12 12 C 1.38636 * 118.68171 * 359.97438 * 11 10 9 13 13 C 1.39756 * 119.49229 * 0.02562 * 12 11 10 14 14 N 1.38829 * 119.58351 * 179.97438 * 13 12 11 15 15 C 1.46496 * 119.99935 * 359.97438 * 14 13 12 16 16 C 1.50706 * 109.46989 * 180.02562 * 15 14 13 17 17 C 1.33380 * 125.20446 * 89.71456 * 16 15 14 18 18 C 1.38424 * 114.91979 * 179.85799 * 17 16 15 19 19 C 1.33387 * 114.92317 * 0.43559 * 18 17 16 20 20 C 1.50699 * 125.20906 * 179.75013 * 19 18 17 21 21 F 1.39895 * 109.47481 * 89.99469 * 20 19 18 22 22 F 1.39894 * 109.47143 * 209.99896 * 20 19 18 23 23 F 1.39908 * 109.46511 * 329.99590 * 20 19 18 24 24 S 1.75886 * 109.59281 * 359.76596 * 19 18 17 25 25 N 1.31978 * 120.83103 * 0.24841 * 13 12 11 26 26 H 0.97002 * 119.99452 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.42919 * 0.02562 * 10 9 7 28 28 H 1.08003 * 120.66145 * 179.97438 * 11 10 9 29 29 H 1.08006 * 120.25443 * 180.02562 * 12 11 10 30 30 H 0.97000 * 119.99632 * 179.97438 * 14 13 12 31 31 H 1.09003 * 109.47572 * 60.00152 * 15 14 13 32 32 H 1.09004 * 109.47418 * 299.99461 * 15 14 13 33 33 H 1.08001 * 122.54115 * 0.02562 * 17 16 15 34 34 H 1.08004 * 122.54250 * 180.19862 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.7014 1.3464 0.0006 5 1 1.8828 2.3963 -1.2127 6 1 1.8827 2.3966 1.2124 7 6 2.0076 -1.2126 0.0005 8 1 3.0876 -1.2126 0.0001 9 6 1.3010 -2.4365 0.0005 10 6 2.0086 -3.6513 0.0005 11 6 1.3035 -4.8417 0.0000 12 6 -0.0820 -4.7944 0.0000 13 6 -0.7281 -3.5551 0.0000 14 7 -2.1155 -3.5055 -0.0005 15 6 -2.8928 -4.7472 -0.0016 16 6 -4.3637 -4.4191 -0.0026 17 6 -5.1122 -4.2459 -1.0930 18 6 -6.4426 -3.9537 -0.8468 19 6 -6.7726 -3.8806 0.4436 20 6 -8.1498 -3.5724 0.9721 21 9 -8.8644 -4.7641 1.1348 22 9 -8.0411 -2.9218 2.2057 23 9 -8.8225 -2.7452 0.0663 24 16 -5.3543 -4.1984 1.4340 25 7 -0.0359 -2.4314 -0.0049 26 1 -0.4849 0.8401 -0.0004 27 1 3.0886 -3.6553 0.0010 28 1 1.8222 -5.7890 -0.0004 29 1 -0.6577 -5.7082 0.0000 30 1 -2.5701 -2.6487 -0.0001 31 1 -2.6505 -5.3285 0.8881 32 1 -2.6498 -5.3273 -0.8919 33 1 -4.7112 -4.3301 -2.0922 34 1 -7.1585 -3.7930 -1.6394 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308502107.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:10 Heat of formation + Delta-G solvation = -88.972482 kcal Electronic energy + Delta-G solvation = -23887.978408 eV Core-core repulsion = 19690.089920 eV Total energy + Delta-G solvation = -4197.888488 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.055 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.28032 -48.81821 -48.76181 -40.19581 -39.27669 -36.77099 -35.16283 -32.81784 -32.12222 -30.60133 -28.29345 -27.23198 -25.40577 -24.07312 -23.31198 -22.23657 -20.97679 -19.96450 -19.63541 -19.28896 -18.84444 -17.93192 -17.36192 -16.69474 -16.47844 -16.06328 -15.78093 -15.64577 -15.56838 -15.21121 -15.19002 -15.08738 -14.93406 -14.92457 -14.62087 -14.04749 -13.96673 -13.78763 -13.43817 -13.20487 -13.09530 -12.80387 -12.71579 -12.55749 -12.22101 -11.96346 -11.71962 -11.31215 -10.68690 -10.20757 -9.82902 -9.67623 -9.44001 -8.33332 -8.22385 -6.46767 -0.57797 0.11943 0.65267 1.06136 1.35789 1.38231 1.42540 1.53327 1.57135 1.57724 2.25596 2.57102 2.74078 2.93336 3.04871 3.22827 3.49626 4.02159 4.11652 4.26494 4.39425 4.50165 4.54389 4.77491 4.80455 4.96800 5.01326 5.02367 5.11195 5.20978 5.36494 5.71823 5.97605 6.06045 6.23361 6.52977 6.81879 6.91522 7.19953 8.34577 8.51587 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.016462 B = 0.002820 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.523450 B = 9926.817420 C =11111.613698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.751 5.751 2 C 0.027 3.973 3 Si 0.984 3.016 4 H -0.256 1.256 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.471 4.471 8 H 0.085 0.915 9 C 0.259 3.741 10 C -0.343 4.343 11 C -0.029 4.029 12 C -0.365 4.365 13 C 0.396 3.604 14 N -0.731 5.731 15 C 0.209 3.791 16 C -0.170 4.170 17 C -0.122 4.122 18 C -0.050 4.050 19 C -0.324 4.324 20 C 0.548 3.452 21 F -0.172 7.172 22 F -0.179 7.179 23 F -0.169 7.169 24 S 0.188 5.812 25 N -0.565 5.565 26 H 0.275 0.725 27 H 0.101 0.899 28 H 0.130 0.870 29 H 0.124 0.876 30 H 0.393 0.607 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.171 0.829 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.851 -7.401 -0.602 17.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.194 4.194 3 Si 0.804 3.196 4 H -0.179 1.179 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.503 4.503 8 H 0.104 0.896 9 C 0.132 3.868 10 C -0.366 4.366 11 C -0.054 4.054 12 C -0.390 4.390 13 C 0.155 3.845 14 N -0.368 5.368 15 C 0.083 3.917 16 C -0.288 4.288 17 C -0.153 4.153 18 C -0.083 4.083 19 C -0.443 4.443 20 C 0.492 3.508 21 F -0.154 7.154 22 F -0.161 7.161 23 F -0.150 7.150 24 S 0.456 5.544 25 N -0.288 5.288 26 H 0.086 0.914 27 H 0.119 0.881 28 H 0.148 0.852 29 H 0.142 0.858 30 H 0.227 0.773 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.189 0.811 34 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -16.256 -6.770 1.018 17.639 hybrid contribution 0.167 0.358 -1.283 1.343 sum -16.089 -6.412 -0.265 17.322 Atomic orbital electron populations 1.70245 1.08704 1.28550 1.29840 1.26918 0.95713 1.04250 0.92554 0.85143 0.79452 0.76322 0.78655 1.17911 1.19187 1.19301 1.19961 0.94580 0.90523 1.45202 0.89646 1.18655 0.87601 0.93184 0.87323 1.21709 0.99018 0.93842 1.22022 1.21025 0.93820 0.97142 0.93373 1.20971 0.94971 0.96041 1.27042 1.18876 0.85482 0.90380 0.89727 1.44263 1.01464 1.07632 1.83416 1.19638 0.82292 0.86608 1.03129 1.24852 0.99724 1.07676 0.96582 1.20416 0.92379 1.01780 1.00732 1.20353 0.97321 0.95562 0.95075 1.24746 0.97475 1.21503 1.00537 1.17154 0.84131 0.74378 0.75112 1.93236 1.80133 1.46588 1.95397 1.93218 1.96253 1.81921 1.44667 1.93218 1.81933 1.72654 1.67208 1.84593 0.96277 1.66432 1.07079 1.68145 1.08007 1.26288 1.26330 0.91419 0.88062 0.85188 0.85845 0.77267 0.91036 0.89038 0.81149 0.80625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.46 11.46 21.84 0.25 -40.21 16 2 C 0.03 1.41 5.50 85.29 0.47 1.88 16 3 Si 0.98 38.56 29.56 68.60 2.03 40.59 16 4 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 5 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 6 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 7 C -0.47 -25.97 9.14 23.46 0.21 -25.76 16 8 H 0.09 4.45 7.85 -2.91 -0.02 4.43 16 9 C 0.26 14.61 6.55 40.19 0.26 14.88 16 10 C -0.34 -17.20 9.83 22.87 0.22 -16.97 16 11 C -0.03 -1.28 10.15 22.39 0.23 -1.05 16 12 C -0.36 -15.48 9.34 22.73 0.21 -15.27 16 13 C 0.40 18.53 7.65 133.40 1.02 19.55 16 14 N -0.73 -27.29 5.71 -348.72 -1.99 -29.29 16 15 C 0.21 5.58 5.37 85.64 0.46 6.04 16 16 C -0.17 -3.83 5.88 24.59 0.14 -3.69 16 17 C -0.12 -2.33 10.05 21.21 0.21 -2.11 16 18 C -0.05 -0.88 9.70 21.22 0.21 -0.67 16 19 C -0.32 -6.65 5.95 24.59 0.15 -6.50 16 20 C 0.55 11.18 3.52 71.24 0.25 11.43 16 21 F -0.17 -3.48 17.30 44.97 0.78 -2.70 16 22 F -0.18 -4.02 17.06 44.97 0.77 -3.25 16 23 F -0.17 -3.35 16.93 44.97 0.76 -2.59 16 24 S 0.19 4.21 23.04 -56.49 -1.30 2.91 16 25 N -0.57 -31.26 7.89 -186.59 -1.47 -32.73 16 26 H 0.28 13.41 8.29 -92.71 -0.77 12.64 16 27 H 0.10 4.76 8.06 -2.91 -0.02 4.74 16 28 H 0.13 4.60 8.06 -2.91 -0.02 4.58 16 29 H 0.12 4.32 6.68 -2.91 -0.02 4.30 16 30 H 0.39 15.36 8.58 -92.71 -0.80 14.56 16 31 H 0.07 1.86 7.92 -2.39 -0.02 1.84 16 32 H 0.09 2.22 7.92 -2.39 -0.02 2.20 16 33 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 34 H 0.18 2.19 7.99 -2.91 -0.02 2.17 16 Total: -1.00 -63.46 328.29 4.25 -59.21 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.38 Total: 26.33 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: 4.05 Total: -18.26 kcal Atomic # 7 Polarization: -99.01 SS G_CDS: -3.21 Total: -102.23 kcal Atomic # 9 Polarization: -10.85 SS G_CDS: 2.31 Total: -8.55 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -1.30 Total: 2.91 kcal Total: -63.46 4.25 -59.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308502107.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.766 kcal (2) G-P(sol) polarization free energy of solvation -63.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds