Wall clock time and date at job start Tue Mar 31 2020 14:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86797 * 119.99942 * 2 1 4 4 H 1.48494 * 109.47493 * 270.00157 * 3 2 1 5 5 H 1.48499 * 109.47312 * 30.00652 * 3 2 1 6 6 H 1.48500 * 109.46843 * 150.00206 * 3 2 1 7 7 C 1.38630 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99489 * 179.97438 * 7 2 1 9 9 O 1.34808 * 120.00341 * 359.97438 * 7 2 1 10 10 C 1.35780 * 117.00372 * 185.04174 * 9 7 2 11 11 C 1.38907 * 119.99857 * 174.38023 * 10 9 7 12 12 C 1.38000 * 120.00367 * 179.76085 * 11 10 9 13 13 C 1.38945 * 119.99492 * 0.53481 * 12 11 10 14 14 N 1.39895 * 120.00404 * 179.69697 * 13 12 11 15 15 C 1.34781 * 120.00172 * 215.15969 * 14 13 12 16 16 O 1.21739 * 119.99725 * 355.49956 * 15 14 13 17 17 C 1.46458 * 120.00139 * 175.49939 * 15 14 13 18 18 C 1.36136 * 125.71073 * 180.02562 * 17 15 14 19 19 C 1.42225 * 107.62501 * 179.97438 * 18 17 15 20 20 C 1.45591 * 140.77976 * 180.02562 * 19 18 17 21 21 C 1.31826 * 114.63264 * 180.02562 * 20 19 18 22 22 S 1.75351 * 111.24403 * 359.96705 * 21 20 19 23 23 C 1.38186 * 106.99630 * 359.97438 * 19 18 17 24 24 N 1.37471 * 108.16593 * 359.73924 * 23 19 18 25 25 H 0.97003 * 125.68390 * 180.29932 * 24 23 19 26 26 C 1.38947 * 119.99175 * 359.72031 * 13 12 11 27 27 C 1.38002 * 119.99528 * 359.97438 * 26 13 12 28 28 H 0.97002 * 120.00211 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.99877 * 0.02562 * 11 10 9 30 30 H 1.07994 * 120.00348 * 180.22938 * 12 11 10 31 31 H 0.96996 * 120.00015 * 35.15883 * 14 13 12 32 32 H 1.07996 * 126.18656 * 0.02562 * 18 17 15 33 33 H 1.07991 * 122.68674 * 359.95984 * 20 19 18 34 34 H 1.07998 * 124.37348 * 179.97438 * 21 20 19 35 35 H 1.07998 * 120.00131 * 179.97438 * 26 13 12 36 36 H 1.07999 * 119.99635 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4972 2.0465 -1.4000 5 1 1.4473 2.6526 0.7002 6 1 3.5473 1.4401 0.7000 7 6 2.0089 -1.2006 -0.0005 8 1 3.0888 -1.2006 -0.0010 9 8 1.3348 -2.3681 -0.0005 10 6 2.0703 -3.5046 0.1052 11 6 1.4352 -4.7337 0.2292 12 6 2.1825 -5.8893 0.3317 13 6 3.5703 -5.8222 0.3222 14 7 4.3281 -6.9930 0.4325 15 6 5.4968 -6.9786 1.1037 16 8 5.9333 -5.9306 1.5435 17 6 6.2416 -8.2236 1.3041 18 6 7.4277 -8.3430 1.9615 19 6 7.8027 -9.7145 1.9278 20 6 8.8642 -10.6049 2.3748 21 6 8.6942 -11.8705 2.0473 22 16 7.2041 -12.1004 1.1520 23 6 6.8115 -10.3874 1.2391 24 7 5.8547 -9.4743 0.8640 25 1 5.0440 -9.6746 0.3704 26 6 4.2054 -4.5921 0.2035 27 6 3.4577 -3.4373 0.0947 28 1 -0.4850 0.8400 0.0004 29 1 0.3566 -4.7855 0.2410 30 1 1.6888 -6.8453 0.4243 31 1 4.0125 -7.8151 0.0260 32 1 7.9830 -7.5413 2.4256 33 1 9.7229 -10.2564 2.9294 34 1 9.3835 -12.6631 2.2981 35 1 5.2841 -4.5397 0.1965 36 1 3.9513 -2.4812 0.0020 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321556318.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:41 Heat of formation + Delta-G solvation = 45.682260 kcal Electronic energy + Delta-G solvation = -23189.617201 eV Core-core repulsion = 19539.424522 eV Total energy + Delta-G solvation = -3650.192680 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.62642 -39.88307 -38.60891 -36.56249 -35.67166 -34.09882 -32.22481 -30.78393 -30.26928 -29.33919 -27.63599 -25.36623 -23.79437 -23.15475 -22.27203 -21.08505 -20.36855 -19.63236 -19.43806 -18.09278 -17.55978 -16.75530 -16.44493 -15.56420 -15.32443 -14.96201 -14.67089 -14.55363 -14.48472 -14.01747 -13.76926 -13.66409 -13.56319 -13.08008 -12.91996 -12.58431 -12.17453 -12.03548 -11.78655 -11.65008 -11.57803 -11.17057 -11.05262 -10.83439 -10.45587 -10.06181 -9.80437 -9.72335 -9.27662 -8.76058 -8.61728 -8.26964 -8.00907 -7.01087 -6.47485 -4.05037 0.72378 0.97902 1.09678 1.64032 2.09260 2.19325 2.63435 2.76630 3.04912 3.12440 3.14545 3.19369 3.30017 3.95979 4.34530 4.49265 4.57716 4.72186 5.06103 5.10522 5.20916 5.27180 5.43304 5.59817 5.68457 5.77887 5.84701 6.02221 6.07542 6.13462 6.27950 6.38975 6.64596 6.73980 6.84174 6.93568 7.02044 7.25418 7.38700 7.53810 7.69512 7.97415 8.14753 8.98178 9.66276 10.70144 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.035881 B = 0.002058 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.178218 B =13605.379754 C =14289.679620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.391 4.391 8 H 0.093 0.907 9 O -0.174 6.174 10 C 0.148 3.852 11 C -0.178 4.178 12 C -0.090 4.090 13 C 0.028 3.972 14 N -0.656 5.656 15 C 0.578 3.422 16 O -0.507 6.507 17 C -0.002 4.002 18 C -0.068 4.068 19 C -0.163 4.163 20 C -0.068 4.068 21 C -0.223 4.223 22 S 0.130 5.870 23 C -0.010 4.010 24 N -0.526 5.526 25 H 0.420 0.580 26 C -0.061 4.061 27 C -0.220 4.220 28 H 0.270 0.730 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.395 0.605 32 H 0.159 0.841 33 H 0.146 0.854 34 H 0.170 0.830 35 H 0.127 0.873 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.958 -23.639 1.620 27.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.467 4.467 8 H 0.111 0.889 9 O -0.077 6.077 10 C 0.094 3.906 11 C -0.198 4.198 12 C -0.110 4.110 13 C -0.064 4.064 14 N -0.299 5.299 15 C 0.365 3.635 16 O -0.381 6.381 17 C -0.115 4.115 18 C -0.096 4.096 19 C -0.175 4.175 20 C -0.099 4.099 21 C -0.357 4.357 22 S 0.384 5.616 23 C -0.239 4.239 24 N -0.130 5.130 25 H 0.258 0.742 26 C -0.080 4.080 27 C -0.240 4.240 28 H 0.080 0.920 29 H 0.140 0.860 30 H 0.132 0.868 31 H 0.229 0.771 32 H 0.176 0.824 33 H 0.163 0.837 34 H 0.188 0.812 35 H 0.144 0.856 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 13.021 -23.850 1.257 27.202 hybrid contribution 0.575 1.366 0.171 1.492 sum 13.596 -22.484 1.428 26.314 Atomic orbital electron populations 1.70047 1.05964 1.27755 1.45842 1.25305 0.95873 0.98898 0.96461 0.85697 0.79010 0.79942 0.78746 1.19846 1.20231 1.19073 1.21353 0.91901 0.80749 1.52693 0.88921 1.83970 1.34342 1.11450 1.77978 1.19421 0.90286 0.88136 0.92762 1.19989 0.99529 0.89739 1.10521 1.20342 0.91311 0.97554 1.01799 1.17187 0.89840 0.85401 1.14007 1.43013 1.21372 1.11880 1.53679 1.16975 0.80930 0.86858 0.78698 1.90893 1.67440 1.30176 1.49618 1.20106 0.99046 0.83895 1.08413 1.20772 0.94269 0.94527 1.00048 1.19398 0.96687 0.94246 1.07195 1.20353 0.98138 0.91316 1.00052 1.24872 1.01896 1.00563 1.08362 1.83930 1.19910 0.96862 1.60935 1.23577 0.95615 0.97006 1.07690 1.41417 1.19552 1.04738 1.47280 0.74166 1.20862 0.99876 0.90626 0.96685 1.21115 0.93544 0.98822 1.10542 0.91975 0.85957 0.86800 0.77093 0.82373 0.83659 0.81225 0.85570 0.85042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.11 13.67 55.48 0.76 -24.35 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.59 29.55 -169.99 -5.02 15.57 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.39 -10.90 9.48 30.88 0.29 -10.61 16 8 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 9 O -0.17 -4.93 9.75 0.02 0.00 -4.93 16 10 C 0.15 3.56 6.65 -39.08 -0.26 3.30 16 11 C -0.18 -3.63 9.98 -39.42 -0.39 -4.03 16 12 C -0.09 -1.53 9.96 -39.41 -0.39 -1.92 16 13 C 0.03 0.48 6.30 -83.65 -0.53 -0.05 16 14 N -0.66 -8.76 5.33 -11.06 -0.06 -8.82 16 15 C 0.58 8.43 7.62 -12.95 -0.10 8.33 16 16 O -0.51 -9.31 14.28 5.15 0.07 -9.24 16 17 C 0.00 -0.02 6.97 -82.48 -0.57 -0.59 16 18 C -0.07 -0.81 10.58 -38.81 -0.41 -1.22 16 19 C -0.16 -1.72 6.80 -105.45 -0.72 -2.44 16 20 C -0.07 -0.55 10.42 -38.55 -0.40 -0.95 16 21 C -0.22 -1.51 11.03 28.84 0.32 -1.19 16 22 S 0.13 0.95 23.24 -107.50 -2.50 -1.55 16 23 C -0.01 -0.10 8.41 -15.04 -0.13 -0.23 16 24 N -0.53 -4.81 6.08 -7.94 -0.05 -4.86 16 25 H 0.42 2.54 8.15 -40.82 -0.33 2.21 16 26 C -0.06 -1.21 8.69 -39.41 -0.34 -1.55 16 27 C -0.22 -4.91 9.16 -39.42 -0.36 -5.28 16 28 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.12 2.37 8.06 -52.49 -0.42 1.94 16 30 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.40 3.67 7.90 -40.82 -0.32 3.35 16 32 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.17 0.68 8.06 -52.49 -0.42 0.25 16 35 H 0.13 2.48 6.22 -52.49 -0.33 2.15 16 36 H 0.13 2.95 5.63 -52.49 -0.30 2.65 16 LS Contribution 332.48 15.07 5.01 5.01 Total: -1.00 -33.67 332.48 -8.68 -42.34 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -2.80 Total: 8.26 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -4.09 Total: -17.44 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.65 Total: -38.03 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: 0.07 Total: -14.17 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.50 Total: -1.55 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.67 -8.68 -42.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321556318.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.024 kcal (2) G-P(sol) polarization free energy of solvation -33.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds