Wall clock time and date at job start Tue Mar 31 2020 15:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86801 * 120.00310 * 2 1 4 4 H 1.48509 * 109.47116 * 270.00447 * 3 2 1 5 5 H 1.48506 * 109.47025 * 30.00016 * 3 2 1 6 6 H 1.48500 * 109.47389 * 150.00089 * 3 2 1 7 7 C 1.37882 * 120.00308 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00335 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99515 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46932 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47236 * 179.97438 * 10 9 7 12 12 C 1.34773 * 120.00365 * 180.02562 * 11 10 9 13 13 O 1.21348 * 119.99762 * 0.02562 * 12 11 10 14 14 C 1.49453 * 120.00316 * 180.02562 * 12 11 10 15 15 O 1.21341 * 119.99616 * 359.97438 * 14 12 11 16 16 N 1.34780 * 119.99798 * 180.02562 * 14 12 11 17 17 C 1.46498 * 119.99513 * 179.97438 * 16 14 12 18 18 C 1.50705 * 109.47050 * 179.97438 * 17 16 14 19 19 C 1.38225 * 119.99781 * 260.02366 * 18 17 16 20 20 C 1.38204 * 120.03073 * 179.97438 * 19 18 17 21 21 C 1.38381 * 120.04362 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 120.00084 * 179.97438 * 21 20 19 23 23 C 1.38296 * 119.99810 * 359.72321 * 21 20 19 24 24 C 1.38440 * 119.99463 * 80.00045 * 18 17 16 25 25 F 1.35104 * 120.02287 * 359.97438 * 24 18 17 26 26 H 0.97004 * 120.00316 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46894 * 59.99984 * 9 7 2 28 28 H 1.08995 * 109.47370 * 299.99897 * 9 7 2 29 29 H 1.08999 * 109.47077 * 60.00422 * 10 9 7 30 30 H 1.08994 * 109.47772 * 300.00460 * 10 9 7 31 31 H 0.97002 * 119.99545 * 0.02562 * 11 10 9 32 32 H 0.96995 * 120.00252 * 359.97438 * 16 14 12 33 33 H 1.09002 * 109.47217 * 59.99992 * 17 16 14 34 34 H 1.08995 * 109.47539 * 300.00088 * 17 16 14 35 35 H 1.07992 * 119.98342 * 0.02562 * 19 18 17 36 36 H 1.08000 * 119.97626 * 180.02562 * 20 19 18 37 37 H 1.07994 * 120.02078 * 180.27193 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 7 1.5127 -4.9308 -0.0012 12 6 2.1865 -6.0980 -0.0016 13 8 3.4000 -6.0980 -0.0020 14 6 1.4393 -7.3923 -0.0016 15 8 0.2259 -7.3923 -0.0007 16 7 2.1132 -8.5595 -0.0015 17 6 1.3807 -9.8282 -0.0008 18 6 2.3600 -10.9737 -0.0015 19 6 2.6506 -11.6338 -1.1806 20 6 3.5489 -12.6841 -1.1821 21 6 4.1581 -13.0763 -0.0031 22 17 5.2859 -14.3961 -0.0061 23 6 3.8724 -12.4135 1.1766 24 6 2.9688 -11.3644 1.1789 25 9 2.6858 -10.7188 2.3314 26 1 -0.4851 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6247 -2.5572 0.8896 29 1 2.8725 -3.6048 0.8877 30 1 2.8712 -3.6040 -0.8921 31 1 0.5427 -4.9308 -0.0005 32 1 3.0832 -8.5595 -0.0018 33 1 0.7537 -9.8862 -0.8906 34 1 0.7543 -9.8857 0.8893 35 1 2.1760 -11.3282 -2.1013 36 1 3.7756 -13.1990 -2.1040 37 1 4.3510 -12.7165 2.0961 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321692331.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:57 Heat of formation + Delta-G solvation = -107.844715 kcal Electronic energy + Delta-G solvation = -23734.139134 eV Core-core repulsion = 19644.476094 eV Total energy + Delta-G solvation = -4089.663040 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.46275 -40.56285 -39.78631 -38.31321 -37.17349 -35.62911 -34.82082 -32.87699 -31.90713 -31.23674 -29.83195 -27.27459 -25.34413 -23.66367 -23.42615 -22.08483 -21.05471 -20.28784 -18.66834 -18.19525 -17.35084 -16.93366 -16.47613 -16.35587 -16.06633 -15.84700 -15.43910 -15.07564 -14.73165 -14.56910 -14.46650 -14.15529 -13.89456 -13.78689 -13.45105 -13.35693 -12.80441 -12.38728 -12.32800 -11.98339 -11.85783 -11.61195 -11.55193 -11.24679 -11.06845 -10.67352 -10.40788 -9.84678 -9.66433 -9.52127 -9.47654 -9.32474 -9.13940 -8.71331 -8.42558 -6.10720 -4.14400 0.21041 0.45179 1.40270 1.56676 2.40445 2.87186 3.28641 3.34999 3.38692 3.38909 3.60004 3.88567 3.90585 4.00092 4.28980 4.39732 4.49195 4.72367 4.81926 4.95546 5.18330 5.25102 5.26189 5.31095 5.46001 5.61132 5.94804 6.04756 6.16807 6.22779 6.57746 6.67883 6.96167 7.44652 7.57001 7.61573 7.86411 7.87703 8.19600 8.32107 8.91137 9.50506 11.00706 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.030866 B = 0.001802 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.927020 B =15536.748405 C =15833.785726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.118 3.882 11 N -0.685 5.685 12 C 0.498 3.502 13 O -0.532 6.532 14 C 0.511 3.489 15 O -0.517 6.517 16 N -0.703 5.703 17 C 0.161 3.839 18 C -0.141 4.141 19 C -0.055 4.055 20 C -0.122 4.122 21 C 0.000 4.000 22 Cl -0.054 7.054 23 C -0.150 4.150 24 C 0.135 3.865 25 F -0.123 7.123 26 H 0.263 0.737 27 H 0.025 0.975 28 H 0.025 0.975 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.411 0.589 32 H 0.414 0.586 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.149 0.851 36 H 0.145 0.855 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.938 -30.628 -1.301 31.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.027 4.027 10 C -0.003 4.003 11 N -0.336 5.336 12 C 0.277 3.723 13 O -0.410 6.410 14 C 0.292 3.708 15 O -0.392 6.392 16 N -0.358 5.358 17 C 0.038 3.962 18 C -0.142 4.142 19 C -0.074 4.074 20 C -0.141 4.141 21 C -0.027 4.027 22 Cl -0.024 7.024 23 C -0.169 4.169 24 C 0.114 3.886 25 F -0.101 7.101 26 H 0.072 0.928 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.246 0.754 32 H 0.250 0.750 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.166 0.834 36 H 0.162 0.838 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.840 -30.554 -1.245 31.132 hybrid contribution 0.491 0.824 0.278 0.999 sum 6.331 -29.730 -0.967 30.412 Atomic orbital electron populations 1.69954 1.06091 1.26958 1.50024 1.25003 0.94905 0.99448 0.94933 0.86496 0.79803 0.82949 0.78190 1.20554 1.21151 1.19730 1.21011 0.93223 0.90229 1.51760 0.92159 1.19362 0.94195 0.90862 0.98273 1.21945 0.96284 0.80700 1.01372 1.46233 1.11805 1.05757 1.69803 1.19906 0.87694 0.85161 0.79511 1.90737 1.13200 1.87482 1.49617 1.20484 0.87723 0.85431 0.77194 1.90765 1.13376 1.87585 1.47472 1.45751 1.11485 1.04323 1.74263 1.20180 0.92225 0.79223 1.04568 1.20043 1.01268 1.00144 0.92747 1.21015 0.95499 0.93459 0.97420 1.21165 0.97335 0.98108 0.97487 1.20707 0.95059 0.92435 0.94549 1.98409 1.59564 1.45637 1.98835 1.21016 1.00058 0.96613 0.99235 1.17348 0.96634 0.92619 0.81961 1.91588 1.91917 1.79829 1.46745 0.92768 0.95644 0.95624 0.91832 0.91822 0.75355 0.74990 0.89133 0.89462 0.83375 0.83764 0.83264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 10 C 0.12 2.46 5.61 -4.04 -0.02 2.44 16 11 N -0.69 -12.35 5.55 -60.73 -0.34 -12.69 16 12 C 0.50 8.46 7.89 -11.59 -0.09 8.37 16 13 O -0.53 -9.99 16.48 5.50 0.09 -9.90 16 14 C 0.51 7.41 7.89 -11.58 -0.09 7.32 16 15 O -0.52 -8.41 16.48 5.50 0.09 -8.32 16 16 N -0.70 -7.83 5.54 -61.91 -0.34 -8.17 16 17 C 0.16 1.39 5.52 -5.19 -0.03 1.36 16 18 C -0.14 -1.01 5.25 -104.55 -0.55 -1.56 16 19 C -0.06 -0.29 9.67 -39.60 -0.38 -0.68 16 20 C -0.12 -0.63 9.83 -39.54 -0.39 -1.02 16 21 C 0.00 0.00 6.32 -39.51 -0.25 -0.25 16 22 Cl -0.05 -0.33 28.96 -51.86 -1.50 -1.83 16 23 C -0.15 -1.02 9.81 -39.48 -0.39 -1.41 16 24 C 0.13 1.07 7.25 -39.42 -0.29 0.79 16 25 F -0.12 -1.20 16.66 2.25 0.04 -1.16 16 26 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 27 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.41 7.03 7.94 -40.82 -0.32 6.71 16 32 H 0.41 4.37 7.94 -40.82 -0.32 4.05 16 33 H 0.09 0.69 8.00 -51.93 -0.42 0.27 16 34 H 0.09 0.81 7.95 -51.93 -0.41 0.40 16 35 H 0.15 0.50 8.04 -52.49 -0.42 0.07 16 36 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 37 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 353.10 15.07 5.32 5.32 Total: -1.00 -31.47 353.10 -7.93 -39.40 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -3.98 Total: 4.04 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -3.03 Total: 2.37 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: 0.06 Total: -46.12 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: 0.18 Total: -18.22 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.50 Total: -1.83 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.47 -7.93 -39.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321692331.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.444 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds