Wall clock time and date at job start Tue Mar 31 2020 15:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86801 * 120.00310 * 2 1 4 4 H 1.48509 * 109.47116 * 270.00447 * 3 2 1 5 5 H 1.48506 * 109.47025 * 30.00016 * 3 2 1 6 6 H 1.48500 * 109.47389 * 150.00089 * 3 2 1 7 7 C 1.37882 * 120.00308 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00335 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99515 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46932 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47236 * 179.97438 * 10 9 7 12 12 C 1.34773 * 120.00365 * 180.02562 * 11 10 9 13 13 O 1.21348 * 119.99762 * 0.02562 * 12 11 10 14 14 C 1.49453 * 120.00316 * 180.02562 * 12 11 10 15 15 O 1.21341 * 119.99616 * 359.97438 * 14 12 11 16 16 N 1.34780 * 119.99798 * 180.02562 * 14 12 11 17 17 C 1.46498 * 119.99513 * 179.97438 * 16 14 12 18 18 C 1.50705 * 109.47050 * 179.97438 * 17 16 14 19 19 C 1.38225 * 119.99781 * 260.02366 * 18 17 16 20 20 C 1.38204 * 120.03073 * 179.97438 * 19 18 17 21 21 C 1.38381 * 120.04362 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 120.00084 * 179.97438 * 21 20 19 23 23 C 1.38296 * 119.99810 * 359.72321 * 21 20 19 24 24 C 1.38440 * 119.99463 * 80.00045 * 18 17 16 25 25 F 1.35104 * 120.02287 * 359.97438 * 24 18 17 26 26 H 0.97004 * 120.00316 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46894 * 59.99984 * 9 7 2 28 28 H 1.08995 * 109.47370 * 299.99897 * 9 7 2 29 29 H 1.08999 * 109.47077 * 60.00422 * 10 9 7 30 30 H 1.08994 * 109.47772 * 300.00460 * 10 9 7 31 31 H 0.97002 * 119.99545 * 0.02562 * 11 10 9 32 32 H 0.96995 * 120.00252 * 359.97438 * 16 14 12 33 33 H 1.09002 * 109.47217 * 59.99992 * 17 16 14 34 34 H 1.08995 * 109.47539 * 300.00088 * 17 16 14 35 35 H 1.07992 * 119.98342 * 0.02562 * 19 18 17 36 36 H 1.08000 * 119.97626 * 180.02562 * 20 19 18 37 37 H 1.07994 * 120.02078 * 180.27193 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 7 1.5127 -4.9308 -0.0012 12 6 2.1865 -6.0980 -0.0016 13 8 3.4000 -6.0980 -0.0020 14 6 1.4393 -7.3923 -0.0016 15 8 0.2259 -7.3923 -0.0007 16 7 2.1132 -8.5595 -0.0015 17 6 1.3807 -9.8282 -0.0008 18 6 2.3600 -10.9737 -0.0015 19 6 2.6506 -11.6338 -1.1806 20 6 3.5489 -12.6841 -1.1821 21 6 4.1581 -13.0763 -0.0031 22 17 5.2859 -14.3961 -0.0061 23 6 3.8724 -12.4135 1.1766 24 6 2.9688 -11.3644 1.1789 25 9 2.6858 -10.7188 2.3314 26 1 -0.4851 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6247 -2.5572 0.8896 29 1 2.8725 -3.6048 0.8877 30 1 2.8712 -3.6040 -0.8921 31 1 0.5427 -4.9308 -0.0005 32 1 3.0832 -8.5595 -0.0018 33 1 0.7537 -9.8862 -0.8906 34 1 0.7543 -9.8857 0.8893 35 1 2.1760 -11.3282 -2.1013 36 1 3.7756 -13.1990 -2.1040 37 1 4.3510 -12.7165 2.0961 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321692331.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:56 Heat of formation + Delta-G solvation = -128.815515 kcal Electronic energy + Delta-G solvation = -23735.048496 eV Core-core repulsion = 19644.476094 eV Total energy + Delta-G solvation = -4090.572402 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.11582 -41.75278 -40.42284 -39.57189 -37.69767 -36.95224 -36.07741 -34.81479 -32.57846 -31.75775 -31.68290 -28.23817 -26.96098 -24.81118 -24.14167 -22.92514 -22.64152 -21.53603 -19.82999 -18.86597 -18.58523 -17.94505 -17.89469 -17.13762 -17.07223 -16.86324 -16.51738 -16.43095 -16.11113 -15.88524 -15.46839 -14.92537 -14.84774 -14.60091 -14.47389 -14.30865 -14.26488 -13.87235 -13.26001 -12.96494 -12.94303 -12.86247 -12.53022 -12.48935 -12.37028 -12.28105 -12.07499 -11.68688 -11.44006 -10.79342 -10.61344 -10.45155 -10.20666 -10.12007 -9.80794 -8.23134 -6.34238 -0.31793 -0.02427 0.29484 0.92709 1.31267 1.43854 1.44062 1.55588 2.09665 2.25041 2.41296 2.74465 3.06866 3.11821 3.29251 3.42487 3.52825 3.85564 3.99504 4.33044 4.38856 4.39002 4.45315 4.53745 4.72953 4.81433 4.87308 4.98192 5.01431 5.07362 5.12288 5.42508 5.55313 5.55406 5.75176 5.87237 6.13191 6.31301 6.65674 6.79407 6.90331 7.35217 8.88772 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.030866 B = 0.001802 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.927020 B =15536.748405 C =15833.785726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.018 3.982 10 C 0.138 3.862 11 N -0.688 5.688 12 C 0.500 3.500 13 O -0.549 6.549 14 C 0.518 3.482 15 O -0.536 6.536 16 N -0.686 5.686 17 C 0.160 3.840 18 C -0.144 4.144 19 C -0.047 4.047 20 C -0.116 4.116 21 C -0.005 4.005 22 Cl -0.053 7.053 23 C -0.154 4.154 24 C 0.116 3.884 25 F -0.139 7.139 26 H 0.265 0.735 27 H 0.009 0.991 28 H 0.008 0.992 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.415 0.585 32 H 0.418 0.582 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.174 0.826 36 H 0.168 0.832 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.915 -31.685 -2.269 32.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.083 0.917 9 C -0.020 4.020 10 C 0.015 3.985 11 N -0.339 5.339 12 C 0.281 3.719 13 O -0.428 6.428 14 C 0.299 3.701 15 O -0.413 6.413 16 N -0.339 5.339 17 C 0.038 3.962 18 C -0.146 4.146 19 C -0.065 4.065 20 C -0.134 4.134 21 C -0.032 4.032 22 Cl -0.024 7.024 23 C -0.174 4.174 24 C 0.096 3.904 25 F -0.117 7.117 26 H 0.074 0.926 27 H 0.027 0.973 28 H 0.026 0.974 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.251 0.749 32 H 0.255 0.745 33 H 0.126 0.874 34 H 0.098 0.902 35 H 0.191 0.809 36 H 0.185 0.815 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.840 -31.664 -2.212 32.470 hybrid contribution 0.220 1.018 0.565 1.185 sum 7.060 -30.646 -1.647 31.492 Atomic orbital electron populations 1.70072 1.07665 1.28011 1.50930 1.25915 0.95787 1.03268 0.94449 0.85407 0.78610 0.78281 0.78500 1.19751 1.20784 1.18827 1.21451 0.93753 0.91557 1.51561 0.91718 1.19185 0.94362 0.91900 0.96522 1.21483 0.95098 0.80760 1.01163 1.46066 1.11948 1.05430 1.70443 1.20314 0.87545 0.85722 0.78355 1.90724 1.14040 1.87886 1.50156 1.19904 0.87185 0.85251 0.77791 1.90767 1.13872 1.87660 1.49038 1.45755 1.11767 1.04250 1.72175 1.20338 0.92524 0.78274 1.05064 1.19962 1.01351 1.00023 0.93224 1.21292 0.94939 0.92766 0.97540 1.21463 0.96370 0.97677 0.97914 1.20846 0.95167 0.92420 0.94807 1.98413 1.59557 1.45560 1.98835 1.21098 0.99914 0.96435 0.99926 1.17562 0.97696 0.93383 0.81792 1.91545 1.92199 1.80282 1.47716 0.92581 0.97272 0.97407 0.92137 0.91881 0.74852 0.74502 0.87412 0.90178 0.80866 0.81486 0.82742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.62 13.29 21.45 0.28 -54.34 16 2 C 0.00 0.26 5.46 84.66 0.46 0.72 16 3 Si 0.97 43.29 29.54 68.60 2.03 45.32 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 6 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.54 -30.00 9.11 25.60 0.23 -29.77 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.02 0.90 5.09 29.85 0.15 1.05 16 10 C 0.14 5.74 5.61 86.38 0.48 6.23 16 11 N -0.69 -24.83 5.55 -464.42 -2.58 -27.41 16 12 C 0.50 16.73 7.89 87.27 0.69 17.42 16 13 O -0.55 -20.22 16.48 -3.24 -0.05 -20.28 16 14 C 0.52 14.60 7.89 87.27 0.69 15.28 16 15 O -0.54 -17.05 16.48 -3.22 -0.05 -17.11 16 16 N -0.69 -14.38 5.54 -468.14 -2.59 -16.97 16 17 C 0.16 2.51 5.52 85.63 0.47 2.98 16 18 C -0.14 -1.82 5.25 -19.82 -0.10 -1.92 16 19 C -0.05 -0.37 9.67 22.26 0.22 -0.15 16 20 C -0.12 -0.88 9.83 22.30 0.22 -0.66 16 21 C -0.01 -0.06 6.32 22.32 0.14 0.08 16 22 Cl -0.05 -0.56 28.96 -2.72 -0.08 -0.64 16 23 C -0.15 -1.96 9.81 22.34 0.22 -1.74 16 24 C 0.12 1.76 7.25 22.37 0.16 1.92 16 25 F -0.14 -2.72 16.66 44.97 0.75 -1.97 16 26 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 27 H 0.01 0.47 8.14 -2.39 -0.02 0.46 16 28 H 0.01 0.40 8.14 -2.39 -0.02 0.39 16 29 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.42 14.37 7.94 -92.71 -0.74 13.63 16 32 H 0.42 8.26 7.94 -92.71 -0.74 7.53 16 33 H 0.11 1.38 8.00 -2.39 -0.02 1.36 16 34 H 0.08 1.43 7.95 -2.39 -0.02 1.41 16 35 H 0.17 0.48 8.04 -2.91 -0.02 0.46 16 36 H 0.17 0.51 8.06 -2.91 -0.02 0.49 16 37 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -66.90 353.10 1.41 -65.50 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -0.33 Total: 16.45 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: 4.03 Total: 11.45 kcal Atomic # 7 Polarization: -93.83 SS G_CDS: -4.89 Total: -98.71 kcal Atomic # 8 Polarization: -37.28 SS G_CDS: -0.11 Total: -37.39 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.75 Total: -1.97 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -0.08 Total: -0.64 kcal Total: -66.90 1.41 -65.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321692331.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.319 kcal (2) G-P(sol) polarization free energy of solvation -66.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds