Wall clock time and date at job start Tue Mar 31 2020 15:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00195 * 2 1 4 4 H 1.48496 * 109.47307 * 270.00547 * 3 2 1 5 5 H 1.48503 * 109.46960 * 30.00206 * 3 2 1 6 6 H 1.48495 * 109.47534 * 150.00089 * 3 2 1 7 7 C 1.37879 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99658 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00146 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47365 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00155 * 179.97438 * 10 9 7 12 12 O 1.21666 * 119.99896 * 0.02562 * 11 10 9 13 13 C 1.46915 * 120.00044 * 180.02562 * 11 10 9 14 14 C 1.35941 * 125.45368 * 180.02562 * 13 11 10 15 15 C 1.41424 * 107.74769 * 179.73463 * 14 13 11 16 16 C 1.40843 * 107.04007 * 0.35896 * 15 14 13 17 17 C 1.39163 * 119.56559 * 179.82877 * 16 15 14 18 18 C 1.37765 * 120.07588 * 359.77358 * 17 16 15 19 19 C 1.38750 * 120.72929 * 359.95741 * 18 17 16 20 20 C 1.38077 * 120.39521 * 0.03898 * 19 18 17 21 21 O 1.35777 * 120.19928 * 179.97438 * 20 19 18 22 22 C 1.42900 * 116.99981 * 359.97438 * 21 20 19 23 23 F 1.39905 * 109.47006 * 60.00165 * 22 21 20 24 24 F 1.39900 * 109.47309 * 300.00466 * 22 21 20 25 25 F 1.39897 * 109.47274 * 180.02562 * 22 21 20 26 26 N 1.37529 * 107.37310 * 359.64045 * 16 15 14 27 27 H 0.96998 * 125.62950 * 180.20101 * 26 16 15 28 28 H 0.96996 * 119.99581 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47106 * 60.00139 * 9 7 2 30 30 H 1.08999 * 109.47157 * 300.00226 * 9 7 2 31 31 H 0.96994 * 119.99432 * 0.02562 * 10 9 7 32 32 H 1.07991 * 126.12418 * 359.96132 * 14 13 11 33 33 H 1.07998 * 119.96177 * 179.75195 * 17 16 15 34 34 H 1.08004 * 119.63706 * 179.97438 * 18 17 16 35 35 H 1.07998 * 119.79832 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0018 11 6 1.7539 -4.8834 -0.0015 12 8 0.5577 -5.1057 -0.0006 13 6 2.7086 -6.0000 -0.0021 14 6 2.3793 -7.3190 -0.0024 15 6 3.5817 -8.0635 -0.0093 16 6 4.6415 -7.1359 -0.0047 17 6 5.9554 -7.5945 -0.0062 18 6 6.2144 -8.9476 -0.0075 19 6 5.1762 -9.8681 -0.0064 20 6 3.8634 -9.4405 -0.0048 21 8 2.8505 -10.3448 -0.0042 22 6 3.2146 -11.7266 -0.0059 23 9 3.9727 -12.0106 1.1352 24 9 3.9697 -12.0086 -1.1494 25 9 2.0580 -12.5137 -0.0057 26 7 4.0861 -5.8777 -0.0036 27 1 4.5791 -5.0424 -0.0034 28 1 -0.4849 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8896 31 1 3.1567 -3.4354 -0.0021 32 1 1.3788 -7.7254 -0.0016 33 1 6.7730 -6.8888 -0.0067 34 1 7.2368 -9.2957 -0.0090 35 1 5.3965 -10.9254 -0.0070 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322253278.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:29 Heat of formation + Delta-G solvation = -175.502422 kcal Electronic energy + Delta-G solvation = -26697.078372 eV Core-core repulsion = 22052.684793 eV Total energy + Delta-G solvation = -4644.393578 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.70642 -48.42112 -48.29835 -41.81731 -39.69734 -38.56448 -36.36854 -34.46806 -32.55207 -31.98235 -29.90240 -28.99589 -27.47915 -26.23861 -24.16728 -22.69864 -22.44953 -21.36040 -20.06040 -19.88147 -19.41960 -19.23991 -18.35841 -17.19520 -16.45590 -15.95571 -15.62787 -15.53820 -15.18931 -15.10710 -15.09443 -14.96624 -14.73087 -14.62136 -14.46390 -14.39754 -14.38961 -13.93424 -13.76600 -13.51441 -13.11991 -12.92479 -12.11080 -12.02432 -11.95247 -11.67108 -11.48171 -11.09045 -10.97691 -10.44234 -9.90318 -9.58411 -9.50224 -8.87754 -8.59140 -8.13508 -7.77896 -6.26726 -4.34930 0.55876 1.20018 1.22082 2.09698 2.53459 2.79851 3.17499 3.23701 3.25779 3.40600 3.51788 3.69822 3.73780 3.76888 4.25280 4.43237 4.51285 4.62481 4.89829 5.03541 5.07719 5.09752 5.33410 5.48491 5.74773 5.83423 6.07838 6.13159 6.32640 6.47938 6.75720 7.11055 7.13919 7.24761 7.36957 7.51200 7.83627 8.36254 8.59015 8.81148 9.31644 10.83344 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.027244 B = 0.002369 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.491188 B =11816.078692 C =12663.773055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.548 4.548 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.704 5.704 11 C 0.563 3.437 12 O -0.530 6.530 13 C 0.039 3.961 14 C -0.109 4.109 15 C -0.117 4.117 16 C 0.141 3.859 17 C -0.144 4.144 18 C -0.058 4.058 19 C -0.225 4.225 20 C 0.159 3.841 21 O -0.303 6.303 22 C 0.604 3.396 23 F -0.165 7.165 24 F -0.165 7.165 25 F -0.132 7.132 26 N -0.571 5.571 27 H 0.425 0.575 28 H 0.268 0.732 29 H 0.032 0.968 30 H 0.032 0.968 31 H 0.386 0.614 32 H 0.160 0.840 33 H 0.130 0.870 34 H 0.136 0.864 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.859 -21.800 -0.013 25.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.586 4.586 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.352 5.352 11 C 0.347 3.653 12 O -0.407 6.407 13 C -0.071 4.071 14 C -0.135 4.135 15 C -0.122 4.122 16 C 0.029 3.971 17 C -0.165 4.165 18 C -0.078 4.078 19 C -0.244 4.244 20 C 0.116 3.884 21 O -0.223 6.223 22 C 0.513 3.487 23 F -0.147 7.147 24 F -0.147 7.147 25 F -0.113 7.113 26 N -0.176 5.176 27 H 0.264 0.736 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.218 0.782 32 H 0.178 0.822 33 H 0.148 0.852 34 H 0.154 0.846 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 12.594 -21.593 -0.008 24.997 hybrid contribution 1.234 1.049 -0.008 1.620 sum 13.828 -20.544 -0.016 24.764 Atomic orbital electron populations 1.69965 1.06116 1.27529 1.48340 1.24947 0.94940 0.99506 0.94505 0.86390 0.79577 0.82520 0.78282 1.20388 1.20892 1.19763 1.21161 0.93186 0.90325 1.53961 0.91932 1.19230 0.88138 0.81500 0.98265 1.46446 1.11076 1.06015 1.71632 1.17184 0.87211 0.82128 0.78807 1.90839 1.14730 1.84223 1.50958 1.20731 0.81800 0.96056 1.08530 1.20794 0.98173 0.90057 1.04497 1.17199 0.94382 0.88841 1.11782 1.17955 0.93403 0.83880 1.01885 1.20080 0.92793 0.96101 1.07479 1.20521 0.98691 0.91272 0.97326 1.21160 0.90863 1.01035 1.11387 1.18080 0.85413 0.85945 0.98990 1.86417 1.34789 1.12451 1.88615 1.19357 0.74353 0.80272 0.74714 1.93300 1.76226 1.93622 1.51589 1.93299 1.76387 1.93654 1.51402 1.93311 1.49514 1.72201 1.96300 1.42090 1.05597 1.06829 1.63070 0.73611 0.92264 0.94981 0.94970 0.78151 0.82244 0.85160 0.84617 0.84936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.26 13.29 55.43 0.74 -24.53 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.91 20.17 29.54 -169.99 -5.02 15.15 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.55 -14.24 9.28 -34.44 -0.32 -14.56 16 8 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 9 C 0.25 6.30 5.43 -5.19 -0.03 6.28 16 10 N -0.70 -14.02 5.54 -62.72 -0.35 -14.37 16 11 C 0.56 11.08 7.79 -12.75 -0.10 10.98 16 12 O -0.53 -12.50 16.84 5.22 0.09 -12.41 16 13 C 0.04 0.60 6.97 -82.26 -0.57 0.03 16 14 C -0.11 -1.67 10.52 -39.19 -0.41 -2.08 16 15 C -0.12 -1.58 6.11 -106.83 -0.65 -2.24 16 16 C 0.14 1.67 7.25 -83.98 -0.61 1.06 16 17 C -0.14 -1.32 10.06 -39.41 -0.40 -1.71 16 18 C -0.06 -0.49 10.01 -39.57 -0.40 -0.89 16 19 C -0.22 -2.24 8.26 -39.45 -0.33 -2.57 16 20 C 0.16 1.94 6.53 -38.77 -0.25 1.69 16 21 O -0.30 -3.63 10.38 -19.04 -0.20 -3.83 16 22 C 0.60 5.88 3.42 101.05 0.35 6.23 16 23 F -0.17 -1.53 15.57 2.25 0.04 -1.49 16 24 F -0.17 -1.53 15.57 2.25 0.04 -1.50 16 25 F -0.13 -1.26 17.53 2.25 0.04 -1.22 16 26 N -0.57 -6.92 6.08 -7.35 -0.04 -6.96 16 27 H 0.42 3.99 8.12 -40.82 -0.33 3.66 16 28 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.39 6.34 7.38 -40.82 -0.30 6.04 16 32 H 0.16 2.41 8.06 -52.49 -0.42 1.99 16 33 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 34 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 35 H 0.13 1.14 5.07 -52.49 -0.27 0.87 16 LS Contribution 325.66 15.07 4.91 4.91 Total: -1.00 -31.16 325.66 -6.13 -37.29 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -2.55 Total: 5.08 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -3.82 Total: 3.88 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.34 Total: -45.85 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.11 Total: -16.24 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.11 Total: -4.21 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.16 -6.13 -37.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322253278.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.213 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds