Wall clock time and date at job start Tue Mar 31 2020 15:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00195 * 2 1 4 4 H 1.48496 * 109.47307 * 270.00547 * 3 2 1 5 5 H 1.48503 * 109.46960 * 30.00206 * 3 2 1 6 6 H 1.48495 * 109.47534 * 150.00089 * 3 2 1 7 7 C 1.37879 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99658 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00146 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47365 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00155 * 179.97438 * 10 9 7 12 12 O 1.21666 * 119.99896 * 0.02562 * 11 10 9 13 13 C 1.46915 * 120.00044 * 180.02562 * 11 10 9 14 14 C 1.35941 * 125.45368 * 180.02562 * 13 11 10 15 15 C 1.41424 * 107.74769 * 179.73463 * 14 13 11 16 16 C 1.40843 * 107.04007 * 0.35896 * 15 14 13 17 17 C 1.39163 * 119.56559 * 179.82877 * 16 15 14 18 18 C 1.37765 * 120.07588 * 359.77358 * 17 16 15 19 19 C 1.38750 * 120.72929 * 359.95741 * 18 17 16 20 20 C 1.38077 * 120.39521 * 0.03898 * 19 18 17 21 21 O 1.35777 * 120.19928 * 179.97438 * 20 19 18 22 22 C 1.42900 * 116.99981 * 359.97438 * 21 20 19 23 23 F 1.39905 * 109.47006 * 60.00165 * 22 21 20 24 24 F 1.39900 * 109.47309 * 300.00466 * 22 21 20 25 25 F 1.39897 * 109.47274 * 180.02562 * 22 21 20 26 26 N 1.37529 * 107.37310 * 359.64045 * 16 15 14 27 27 H 0.96998 * 125.62950 * 180.20101 * 26 16 15 28 28 H 0.96996 * 119.99581 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47106 * 60.00139 * 9 7 2 30 30 H 1.08999 * 109.47157 * 300.00226 * 9 7 2 31 31 H 0.96994 * 119.99432 * 0.02562 * 10 9 7 32 32 H 1.07991 * 126.12418 * 359.96132 * 14 13 11 33 33 H 1.07998 * 119.96177 * 179.75195 * 17 16 15 34 34 H 1.08004 * 119.63706 * 179.97438 * 18 17 16 35 35 H 1.07998 * 119.79832 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0018 11 6 1.7539 -4.8834 -0.0015 12 8 0.5577 -5.1057 -0.0006 13 6 2.7086 -6.0000 -0.0021 14 6 2.3793 -7.3190 -0.0024 15 6 3.5817 -8.0635 -0.0093 16 6 4.6415 -7.1359 -0.0047 17 6 5.9554 -7.5945 -0.0062 18 6 6.2144 -8.9476 -0.0075 19 6 5.1762 -9.8681 -0.0064 20 6 3.8634 -9.4405 -0.0048 21 8 2.8505 -10.3448 -0.0042 22 6 3.2146 -11.7266 -0.0059 23 9 3.9727 -12.0106 1.1352 24 9 3.9697 -12.0086 -1.1494 25 9 2.0580 -12.5137 -0.0057 26 7 4.0861 -5.8777 -0.0036 27 1 4.5791 -5.0424 -0.0034 28 1 -0.4849 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8896 31 1 3.1567 -3.4354 -0.0021 32 1 1.3788 -7.7254 -0.0016 33 1 6.7730 -6.8888 -0.0067 34 1 7.2368 -9.2957 -0.0090 35 1 5.3965 -10.9254 -0.0070 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322253278.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:29 Heat of formation + Delta-G solvation = -197.172026 kcal Electronic energy + Delta-G solvation = -26698.018036 eV Core-core repulsion = 22052.684793 eV Total energy + Delta-G solvation = -4645.333243 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.47172 -49.18952 -49.05110 -42.82370 -40.78091 -39.98234 -37.25562 -36.33396 -34.46882 -32.99850 -31.02257 -29.96709 -29.23700 -27.10071 -25.66359 -23.96304 -23.54547 -22.55377 -21.33770 -20.94334 -20.19143 -20.16323 -19.55694 -18.39394 -17.85808 -17.26149 -16.85246 -16.67107 -16.41689 -16.24564 -16.20801 -15.86088 -15.74116 -15.64761 -15.48306 -15.30809 -15.23304 -15.04635 -14.89809 -14.61838 -14.31801 -14.07895 -13.98926 -13.97160 -12.98385 -12.74200 -12.71175 -12.47579 -12.35188 -12.26461 -11.53895 -11.27503 -10.89207 -10.84777 -10.06263 -9.47870 -8.74892 -8.31564 -6.48728 -0.42600 0.35862 0.42407 0.93764 1.43197 1.45357 1.56298 1.70228 1.81705 2.18211 2.22431 2.42290 2.59747 2.73970 2.97920 3.04077 3.51387 3.69615 3.79767 3.84225 4.04799 4.26368 4.35263 4.58493 4.77802 5.01017 5.09039 5.18332 5.23899 5.29667 5.33415 5.37636 5.44992 5.60080 5.78613 5.91568 6.32222 6.57983 6.70330 7.11613 7.27605 8.80605 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.027244 B = 0.002369 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.491188 B =11816.078692 C =12663.773055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.985 3.015 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.254 1.254 7 C -0.558 4.558 8 H 0.087 0.913 9 C 0.265 3.735 10 N -0.696 5.696 11 C 0.566 3.434 12 O -0.580 6.580 13 C 0.019 3.981 14 C -0.110 4.110 15 C -0.146 4.146 16 C 0.145 3.855 17 C -0.139 4.139 18 C -0.043 4.043 19 C -0.220 4.220 20 C 0.141 3.859 21 O -0.322 6.322 22 C 0.609 3.391 23 F -0.160 7.160 24 F -0.160 7.160 25 F -0.132 7.132 26 N -0.558 5.558 27 H 0.437 0.563 28 H 0.270 0.730 29 H -0.005 1.005 30 H -0.005 1.005 31 H 0.406 0.594 32 H 0.147 0.853 33 H 0.166 0.834 34 H 0.178 0.822 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.326 -22.332 -0.005 28.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.808 3.192 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.177 1.177 7 C -0.595 4.595 8 H 0.105 0.895 9 C 0.143 3.857 10 N -0.344 5.344 11 C 0.353 3.647 12 O -0.460 6.460 13 C -0.091 4.091 14 C -0.137 4.137 15 C -0.151 4.151 16 C 0.033 3.967 17 C -0.160 4.160 18 C -0.062 4.062 19 C -0.240 4.240 20 C 0.098 3.902 21 O -0.242 6.242 22 C 0.519 3.481 23 F -0.142 7.142 24 F -0.142 7.142 25 F -0.114 7.114 26 N -0.164 5.164 27 H 0.279 0.721 28 H 0.078 0.922 29 H 0.013 0.987 30 H 0.013 0.987 31 H 0.242 0.758 32 H 0.165 0.835 33 H 0.183 0.817 34 H 0.195 0.805 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 17.132 -22.142 -0.001 27.996 hybrid contribution -0.089 0.986 -0.011 0.990 sum 17.043 -21.156 -0.012 27.167 Atomic orbital electron populations 1.70131 1.08287 1.28690 1.49657 1.26055 0.95764 1.03895 0.93772 0.85149 0.78527 0.76921 0.78583 1.19638 1.21111 1.17746 1.21573 0.94373 0.90280 1.53298 0.89536 1.18683 0.88545 0.83697 0.94817 1.46065 1.11312 1.05106 1.71958 1.17627 0.87307 0.82669 0.77071 1.90801 1.17220 1.85018 1.52977 1.19857 0.82942 0.94247 1.12042 1.20837 0.98710 0.90435 1.03757 1.17342 0.94030 0.90047 1.13653 1.18307 0.94247 0.82991 1.01146 1.20529 0.92157 0.97189 1.06103 1.21075 1.00156 0.90592 0.94384 1.21505 0.90194 1.02353 1.09929 1.18280 0.86364 0.85541 1.00050 1.86383 1.35569 1.13410 1.88797 1.19220 0.74421 0.79549 0.74911 1.93307 1.76042 1.93508 1.51371 1.93306 1.76205 1.93541 1.51184 1.93312 1.49664 1.72069 1.96316 1.41878 1.03960 1.07818 1.62775 0.72086 0.92160 0.98738 0.98715 0.75818 0.83539 0.81660 0.80465 0.83452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.92 13.29 21.45 0.28 -54.63 16 2 C 0.01 0.28 5.46 84.65 0.46 0.74 16 3 Si 0.99 40.95 29.54 68.60 2.03 42.97 16 4 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.29 -11.87 7.11 99.48 0.71 -11.17 16 6 H -0.25 -9.70 7.11 99.48 0.71 -9.00 16 7 C -0.56 -29.18 9.28 25.60 0.24 -28.94 16 8 H 0.09 4.01 7.60 -2.91 -0.02 3.99 16 9 C 0.26 14.12 5.43 85.63 0.46 14.59 16 10 N -0.70 -28.60 5.54 -470.59 -2.61 -31.21 16 11 C 0.57 23.47 7.79 86.52 0.67 24.15 16 12 O -0.58 -29.39 16.84 -4.24 -0.07 -29.46 16 13 C 0.02 0.61 6.97 39.86 0.28 0.89 16 14 C -0.11 -3.50 10.52 22.52 0.24 -3.26 16 15 C -0.15 -3.86 6.11 -21.29 -0.13 -3.99 16 16 C 0.15 3.11 7.25 39.11 0.28 3.39 16 17 C -0.14 -1.91 10.06 22.38 0.23 -1.69 16 18 C -0.04 -0.51 10.01 22.28 0.22 -0.28 16 19 C -0.22 -3.67 8.26 22.35 0.18 -3.48 16 20 C 0.14 3.25 6.53 22.80 0.15 3.40 16 21 O -0.32 -7.60 10.38 -91.05 -0.94 -8.55 16 22 C 0.61 11.18 3.42 113.37 0.39 11.57 16 23 F -0.16 -2.68 15.57 44.97 0.70 -1.98 16 24 F -0.16 -2.69 15.57 44.97 0.70 -1.99 16 25 F -0.13 -2.45 17.53 44.97 0.79 -1.66 16 26 N -0.56 -12.76 6.08 -177.18 -1.08 -13.84 16 27 H 0.44 7.28 8.12 -92.71 -0.75 6.53 16 28 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 29 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 30 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 31 H 0.41 13.18 7.38 -92.71 -0.68 12.50 16 32 H 0.15 4.84 8.06 -2.92 -0.02 4.82 16 33 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 34 H 0.18 0.71 8.06 -2.91 -0.02 0.69 16 35 H 0.15 1.99 5.07 -2.91 -0.01 1.98 16 Total: -1.00 -71.78 325.66 3.24 -68.54 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -0.23 Total: 14.73 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: 3.68 Total: 17.08 kcal Atomic # 7 Polarization: -96.28 SS G_CDS: -3.40 Total: -99.68 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -1.02 Total: -38.01 kcal Atomic # 9 Polarization: -7.82 SS G_CDS: 2.19 Total: -5.63 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.97 kcal Total: -71.78 3.24 -68.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322253278.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.628 kcal (2) G-P(sol) polarization free energy of solvation -71.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds