Wall clock time and date at job start Tue Mar 31 2020 15:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42099 * 109.47076 * 2 1 4 4 C 1.76200 * 103.00192 * 250.94242 * 2 1 3 5 5 C 1.38270 * 119.93907 * 94.99588 * 4 2 1 6 6 C 1.38083 * 120.10306 * 180.02562 * 5 4 2 7 7 C 1.38964 * 119.97304 * 0.28238 * 6 5 4 8 8 N 1.39726 * 120.06117 * 179.69947 * 7 6 5 9 9 C 1.34776 * 120.00044 * 33.35272 * 8 7 6 10 10 O 1.21377 * 119.99809 * 5.27878 * 9 8 7 11 11 C 1.49350 * 119.99779 * 185.27422 * 9 8 7 12 12 O 1.21357 * 120.00397 * 0.02562 * 11 9 8 13 13 N 1.34776 * 119.99779 * 180.02562 * 11 9 8 14 14 C 1.46501 * 120.00068 * 179.97438 * 13 11 9 15 15 C 1.50700 * 109.47282 * 180.02562 * 14 13 11 16 16 H 1.07997 * 119.99982 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99897 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00143 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99705 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47424 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.46916 * 120.00004 * 19 17 15 22 22 H 1.48506 * 109.46975 * 239.99580 * 19 17 15 23 23 C 1.38863 * 119.87480 * 359.44514 * 7 6 5 24 24 C 1.38349 * 119.89606 * 0.53129 * 23 7 6 25 25 F 1.35099 * 119.98250 * 179.74553 * 24 23 7 26 26 H 1.09003 * 109.47193 * 169.06093 * 1 2 3 27 27 H 1.08999 * 109.47509 * 289.06013 * 1 2 3 28 28 H 1.09004 * 109.47346 * 49.06101 * 1 2 3 29 29 H 1.08001 * 119.94620 * 359.97438 * 5 4 2 30 30 H 1.07997 * 120.01362 * 180.02562 * 6 5 4 31 31 H 0.97000 * 119.99384 * 213.35583 * 8 7 6 32 32 H 0.97003 * 120.00232 * 0.02562 * 13 11 9 33 33 H 1.09003 * 109.47669 * 300.00774 * 14 13 11 34 34 H 1.09007 * 109.47024 * 60.00570 * 14 13 11 35 35 H 0.96994 * 119.99905 * 180.02562 * 18 17 15 36 36 H 1.08001 * 120.05464 * 180.27358 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2104 -0.5606 -1.6227 5 6 2.4673 0.3558 -2.6258 6 6 2.7778 -0.0798 -3.8988 7 6 2.8265 -1.4410 -4.1743 8 7 3.1343 -1.8837 -5.4633 9 6 3.9911 -1.1809 -6.2305 10 8 4.5686 -0.2180 -5.7697 11 6 4.2299 -1.5872 -7.6477 12 8 3.6522 -2.5498 -8.1086 13 7 5.0870 -0.8848 -8.4148 14 6 5.3217 -1.2836 -9.8048 15 6 6.3146 -0.3424 -10.4367 16 1 6.7290 0.4717 -9.8606 17 6 6.6931 -0.5200 -11.7506 18 7 6.1881 -1.5111 -12.4522 19 14 7.9244 0.6463 -12.5335 20 1 8.3392 1.6686 -11.5395 21 1 9.1148 -0.1194 -12.9830 22 1 7.2977 1.3171 -13.7008 23 6 2.5739 -2.3605 -3.1648 24 6 2.2638 -1.9182 -1.8911 25 9 2.0127 -2.8112 -0.9089 26 1 -0.3634 -1.0090 -0.1950 27 1 -0.3634 0.3356 0.9713 28 1 -0.3634 0.6734 -0.7763 29 1 2.4243 1.4138 -2.4135 30 1 2.9786 0.6372 -4.6811 31 1 2.7313 -2.6968 -5.8059 32 1 5.5491 -0.1156 -8.0463 33 1 5.7174 -2.2990 -9.8297 34 1 4.3827 -1.2460 -10.3571 35 1 6.4547 -1.6362 -13.3764 36 1 2.6153 -3.4191 -3.3746 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326671976.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:22 Heat of formation + Delta-G solvation = -118.826441 kcal Electronic energy + Delta-G solvation = -24161.594488 eV Core-core repulsion = 20073.498951 eV Total energy + Delta-G solvation = -4088.095537 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.45002 -41.07150 -39.21507 -37.96164 -36.11080 -35.40863 -34.33852 -32.46949 -31.11613 -30.28299 -29.14412 -27.85444 -25.27525 -23.52149 -23.20008 -21.82750 -20.16371 -19.08496 -18.60330 -18.13271 -16.93921 -16.82155 -16.44007 -16.20817 -16.14851 -15.69746 -15.42228 -15.12139 -15.05229 -14.47559 -14.38389 -14.15599 -14.02716 -13.55496 -13.45518 -13.26542 -12.88184 -12.83736 -12.36049 -12.14735 -12.02583 -11.88137 -11.50146 -11.05867 -10.99692 -10.91249 -10.67088 -10.39536 -9.54552 -9.38039 -9.23744 -9.03610 -8.91898 -8.56006 -8.22619 -6.28782 -4.36480 0.27274 0.80173 1.38539 1.61579 2.22566 2.36622 3.08982 3.18552 3.26333 3.30052 3.44826 3.50638 3.69216 3.89733 4.25427 4.33766 4.68482 4.77527 4.84319 4.85860 4.93983 5.06643 5.08296 5.28780 5.56205 5.58571 5.70779 5.79376 5.98256 6.46285 6.75509 6.95719 7.02872 7.26558 7.44097 7.60949 7.78644 8.23874 8.42929 8.73566 9.30259 10.81246 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.029813 B = 0.002129 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.956176 B =13149.149729 C =13820.583430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.499 4.499 2 S 1.341 4.659 3 O -0.852 6.852 4 C -0.520 4.520 5 C -0.003 4.003 6 C -0.148 4.148 7 C 0.219 3.781 8 N -0.654 5.654 9 C 0.511 3.489 10 O -0.494 6.494 11 C 0.492 3.508 12 O -0.533 6.533 13 N -0.667 5.667 14 C 0.246 3.754 15 C -0.548 4.548 16 H 0.067 0.933 17 C 0.065 3.935 18 N -0.884 5.884 19 Si 0.907 3.093 20 H -0.270 1.270 21 H -0.281 1.281 22 H -0.281 1.281 23 C -0.197 4.197 24 C 0.194 3.806 25 F -0.124 7.124 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.083 0.917 29 H 0.143 0.857 30 H 0.147 0.853 31 H 0.428 0.572 32 H 0.405 0.595 33 H 0.037 0.963 34 H 0.036 0.964 35 H 0.267 0.733 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.206 -2.794 25.470 27.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 1.537 4.463 3 O -0.848 6.848 4 C -0.617 4.617 5 C -0.023 4.023 6 C -0.169 4.169 7 C 0.123 3.877 8 N -0.301 5.301 9 C 0.294 3.706 10 O -0.366 6.366 11 C 0.270 3.730 12 O -0.412 6.412 13 N -0.316 5.316 14 C 0.126 3.874 15 C -0.586 4.586 16 H 0.085 0.915 17 C -0.139 4.139 18 N -0.521 5.521 19 Si 0.734 3.266 20 H -0.195 1.195 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.219 4.219 24 C 0.173 3.827 25 F -0.103 7.103 26 H 0.130 0.870 27 H 0.126 0.874 28 H 0.102 0.898 29 H 0.161 0.839 30 H 0.164 0.836 31 H 0.267 0.733 32 H 0.240 0.760 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.539 -2.623 25.882 28.068 hybrid contribution -0.266 1.497 -2.188 2.665 sum -10.805 -1.126 23.694 26.065 Atomic orbital electron populations 1.27763 1.22259 1.08080 1.07464 1.69803 0.86164 0.99392 0.90912 1.93103 1.73314 1.37242 1.81098 1.27566 1.17985 0.97294 1.18897 1.20853 0.90828 0.99823 0.90755 1.21380 1.02511 0.94490 0.98523 1.17622 0.93259 0.92784 0.84060 1.43374 1.44890 1.29301 1.12488 1.21069 0.78558 0.82918 0.88063 1.90778 1.46082 1.26180 1.73605 1.19549 0.82894 0.85117 0.85438 1.90751 1.49379 1.27444 1.73611 1.46460 1.40032 1.30220 1.14923 1.19396 0.97484 0.96932 0.73587 1.21225 1.26027 1.13983 0.97352 0.91456 1.24946 0.96484 0.95672 0.96785 1.69969 1.42827 1.29650 1.09705 0.86298 0.80559 0.80483 0.79256 1.19484 1.20671 1.20692 1.20861 1.09123 1.00823 0.91109 1.16584 0.96466 0.84897 0.84791 1.91542 1.91139 1.67143 1.60441 0.87009 0.87444 0.89759 0.83936 0.83574 0.73294 0.75981 0.94559 0.94584 0.92307 0.83366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -2.78 10.70 101.05 1.08 -1.70 16 2 S 1.34 9.38 13.79 -107.50 -1.48 7.89 16 3 O -0.85 -11.17 16.77 -35.23 -0.59 -11.76 16 4 C -0.52 -4.86 5.64 -39.47 -0.22 -5.08 16 5 C 0.00 -0.03 9.44 -39.63 -0.37 -0.41 16 6 C -0.15 -1.83 8.65 -39.37 -0.34 -2.17 16 7 C 0.22 2.53 6.27 -83.76 -0.53 2.00 16 8 N -0.65 -8.04 5.32 -10.30 -0.05 -8.10 16 9 C 0.51 7.98 7.62 -11.63 -0.09 7.89 16 10 O -0.49 -8.41 14.16 5.47 0.08 -8.33 16 11 C 0.49 9.25 7.89 -11.63 -0.09 9.15 16 12 O -0.53 -11.08 16.48 5.49 0.09 -10.99 16 13 N -0.67 -13.74 5.54 -61.94 -0.34 -14.09 16 14 C 0.25 6.16 5.43 -5.19 -0.03 6.13 16 15 C -0.55 -14.42 9.28 -34.44 -0.32 -14.74 16 16 H 0.07 1.69 7.60 -52.49 -0.40 1.29 16 17 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.88 -25.08 13.29 55.43 0.74 -24.34 16 19 Si 0.91 20.46 29.54 -169.99 -5.02 15.44 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 C -0.20 -1.81 9.94 -39.31 -0.39 -2.20 16 24 C 0.19 1.64 7.25 -39.44 -0.29 1.36 16 25 F -0.12 -0.81 16.73 2.25 0.04 -0.77 16 26 H 0.11 0.43 8.14 -51.92 -0.42 0.00 16 27 H 0.11 0.45 8.14 -51.92 -0.42 0.03 16 28 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 29 H 0.14 1.67 7.33 -52.49 -0.38 1.29 16 30 H 0.15 1.97 6.41 -52.49 -0.34 1.63 16 31 H 0.43 4.47 8.30 -40.82 -0.34 4.13 16 32 H 0.41 7.73 7.79 -40.82 -0.32 7.41 16 33 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.27 7.09 8.31 -40.82 -0.34 6.76 16 36 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 341.02 15.07 5.14 5.14 Total: -1.00 -34.36 341.02 -6.54 -40.90 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -3.45 Total: 7.11 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -1.68 Total: 1.91 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 0.34 Total: -46.53 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -0.42 Total: -31.08 kcal Atomic # 9 Polarization: -0.81 SS G_CDS: 0.04 Total: -0.77 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 9.38 SS G_CDS: -1.48 Total: 7.89 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.36 -6.54 -40.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326671976.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.927 kcal (2) G-P(sol) polarization free energy of solvation -34.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds