Wall clock time and date at job start Tue Mar 31 2020 15:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42099 * 109.47076 * 2 1 4 4 C 1.76200 * 103.00192 * 250.94242 * 2 1 3 5 5 C 1.38270 * 119.93907 * 94.99588 * 4 2 1 6 6 C 1.38083 * 120.10306 * 180.02562 * 5 4 2 7 7 C 1.38964 * 119.97304 * 0.28238 * 6 5 4 8 8 N 1.39726 * 120.06117 * 179.69947 * 7 6 5 9 9 C 1.34776 * 120.00044 * 33.35272 * 8 7 6 10 10 O 1.21377 * 119.99809 * 5.27878 * 9 8 7 11 11 C 1.49350 * 119.99779 * 185.27422 * 9 8 7 12 12 O 1.21357 * 120.00397 * 0.02562 * 11 9 8 13 13 N 1.34776 * 119.99779 * 180.02562 * 11 9 8 14 14 C 1.46501 * 120.00068 * 179.97438 * 13 11 9 15 15 C 1.50700 * 109.47282 * 180.02562 * 14 13 11 16 16 H 1.07997 * 119.99982 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99897 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00143 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99705 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47424 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.46916 * 120.00004 * 19 17 15 22 22 H 1.48506 * 109.46975 * 239.99580 * 19 17 15 23 23 C 1.38863 * 119.87480 * 359.44514 * 7 6 5 24 24 C 1.38349 * 119.89606 * 0.53129 * 23 7 6 25 25 F 1.35099 * 119.98250 * 179.74553 * 24 23 7 26 26 H 1.09003 * 109.47193 * 169.06093 * 1 2 3 27 27 H 1.08999 * 109.47509 * 289.06013 * 1 2 3 28 28 H 1.09004 * 109.47346 * 49.06101 * 1 2 3 29 29 H 1.08001 * 119.94620 * 359.97438 * 5 4 2 30 30 H 1.07997 * 120.01362 * 180.02562 * 6 5 4 31 31 H 0.97000 * 119.99384 * 213.35583 * 8 7 6 32 32 H 0.97003 * 120.00232 * 0.02562 * 13 11 9 33 33 H 1.09003 * 109.47669 * 300.00774 * 14 13 11 34 34 H 1.09007 * 109.47024 * 60.00570 * 14 13 11 35 35 H 0.96994 * 119.99905 * 180.02562 * 18 17 15 36 36 H 1.08001 * 120.05464 * 180.27358 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2104 -0.5606 -1.6227 5 6 2.4673 0.3558 -2.6258 6 6 2.7778 -0.0798 -3.8988 7 6 2.8265 -1.4410 -4.1743 8 7 3.1343 -1.8837 -5.4633 9 6 3.9911 -1.1809 -6.2305 10 8 4.5686 -0.2180 -5.7697 11 6 4.2299 -1.5872 -7.6477 12 8 3.6522 -2.5498 -8.1086 13 7 5.0870 -0.8848 -8.4148 14 6 5.3217 -1.2836 -9.8048 15 6 6.3146 -0.3424 -10.4367 16 1 6.7290 0.4717 -9.8606 17 6 6.6931 -0.5200 -11.7506 18 7 6.1881 -1.5111 -12.4522 19 14 7.9244 0.6463 -12.5335 20 1 8.3392 1.6686 -11.5395 21 1 9.1148 -0.1194 -12.9830 22 1 7.2977 1.3171 -13.7008 23 6 2.5739 -2.3605 -3.1648 24 6 2.2638 -1.9182 -1.8911 25 9 2.0127 -2.8112 -0.9089 26 1 -0.3634 -1.0090 -0.1950 27 1 -0.3634 0.3356 0.9713 28 1 -0.3634 0.6734 -0.7763 29 1 2.4243 1.4138 -2.4135 30 1 2.9786 0.6372 -4.6811 31 1 2.7313 -2.6968 -5.8059 32 1 5.5491 -0.1156 -8.0463 33 1 5.7174 -2.2990 -9.8297 34 1 4.3827 -1.2460 -10.3571 35 1 6.4547 -1.6362 -13.3764 36 1 2.6153 -3.4191 -3.3746 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326671976.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:21 Heat of formation + Delta-G solvation = -145.921249 kcal Electronic energy + Delta-G solvation = -24162.769407 eV Core-core repulsion = 20073.498951 eV Total energy + Delta-G solvation = -4089.270456 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.08318 -42.28924 -40.47081 -39.24561 -36.99400 -36.73107 -35.90989 -34.41127 -31.95135 -31.20670 -29.79260 -29.59961 -26.71805 -24.75798 -24.33533 -23.18540 -21.56514 -20.39724 -19.50245 -19.05827 -18.39572 -17.69036 -17.66141 -17.46671 -17.03818 -16.86048 -16.76072 -16.59877 -15.99948 -15.71386 -15.51576 -15.22824 -14.95913 -14.68080 -14.44156 -14.23354 -14.11919 -13.97572 -13.70082 -13.50295 -13.13648 -13.01943 -12.81140 -12.78525 -12.63833 -12.25616 -11.87179 -11.53281 -11.49614 -10.88440 -10.84857 -10.12023 -10.07261 -9.87166 -9.32281 -8.34270 -6.50070 -0.61423 -0.01373 0.24019 0.80537 1.05482 1.42385 1.43210 1.56628 1.64391 1.94807 2.32050 2.33538 2.51816 2.82015 3.01407 3.02500 3.31532 3.54459 3.83420 4.07339 4.13031 4.32269 4.43900 4.50516 4.72024 4.80762 4.92778 4.95516 5.02722 5.14392 5.14806 5.19382 5.45965 5.60891 5.73451 5.78091 6.33402 6.52349 6.61999 6.92177 7.22764 8.77432 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.029813 B = 0.002129 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.956176 B =13149.149729 C =13820.583430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.495 4.495 2 S 1.394 4.606 3 O -0.914 6.914 4 C -0.518 4.518 5 C -0.018 4.018 6 C -0.162 4.162 7 C 0.200 3.800 8 N -0.635 5.635 9 C 0.524 3.476 10 O -0.509 6.509 11 C 0.496 3.504 12 O -0.552 6.552 13 N -0.672 5.672 14 C 0.263 3.737 15 C -0.562 4.562 16 H 0.079 0.921 17 C 0.011 3.989 18 N -0.924 5.924 19 Si 0.981 3.019 20 H -0.259 1.259 21 H -0.276 1.276 22 H -0.277 1.277 23 C -0.183 4.183 24 C 0.207 3.793 25 F -0.105 7.105 26 H 0.138 0.862 27 H 0.126 0.874 28 H 0.068 0.932 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.438 0.562 32 H 0.413 0.587 33 H 0.008 0.992 34 H 0.007 0.993 35 H 0.271 0.729 36 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.662 -3.362 27.532 30.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.653 4.653 2 S 1.591 4.409 3 O -0.910 6.910 4 C -0.614 4.614 5 C -0.038 4.038 6 C -0.183 4.183 7 C 0.105 3.895 8 N -0.282 5.282 9 C 0.306 3.694 10 O -0.383 6.383 11 C 0.276 3.724 12 O -0.432 6.432 13 N -0.321 5.321 14 C 0.141 3.859 15 C -0.600 4.600 16 H 0.097 0.903 17 C -0.190 4.190 18 N -0.562 5.562 19 Si 0.805 3.195 20 H -0.183 1.183 21 H -0.202 1.202 22 H -0.203 1.203 23 C -0.205 4.205 24 C 0.185 3.815 25 F -0.083 7.083 26 H 0.157 0.843 27 H 0.145 0.855 28 H 0.087 0.913 29 H 0.149 0.851 30 H 0.146 0.854 31 H 0.279 0.721 32 H 0.250 0.750 33 H 0.026 0.974 34 H 0.025 0.975 35 H 0.080 0.920 36 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -11.008 -3.205 27.992 30.248 hybrid contribution -0.304 1.578 -2.652 3.101 sum -11.312 -1.627 25.340 27.797 Atomic orbital electron populations 1.27728 1.19929 1.09533 1.08154 1.69083 0.86679 0.96751 0.88431 1.92999 1.75846 1.40306 1.81828 1.27822 1.16778 0.97615 1.19203 1.20780 0.92111 0.99840 0.91065 1.21298 1.03552 0.94889 0.98559 1.17668 0.95062 0.92865 0.83944 1.43114 1.43656 1.28887 1.12581 1.20196 0.79442 0.83098 0.86652 1.90788 1.47148 1.26941 1.73448 1.20024 0.81535 0.84155 0.86731 1.90733 1.49741 1.28176 1.74566 1.46180 1.41224 1.31056 1.13689 1.18866 0.95764 0.95548 0.75715 1.21586 1.26143 1.14330 0.97895 0.90317 1.25939 0.98367 0.97274 0.97383 1.70093 1.44365 1.31503 1.10219 0.85158 0.77824 0.78292 0.78270 1.18313 1.20190 1.20271 1.21119 1.07041 1.01835 0.90472 1.16439 0.95458 0.84649 0.84952 1.91601 1.90749 1.66365 1.59570 0.84349 0.85517 0.91250 0.85079 0.85392 0.72115 0.75022 0.97377 0.97496 0.92005 0.80446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -4.06 10.70 113.37 1.21 -2.84 16 2 S 1.39 16.96 13.79 -56.49 -0.78 16.18 16 3 O -0.91 -23.72 16.77 -148.98 -2.50 -26.22 16 4 C -0.52 -8.79 5.64 22.34 0.13 -8.66 16 5 C -0.02 -0.42 9.44 22.24 0.21 -0.21 16 6 C -0.16 -4.02 8.65 22.41 0.19 -3.83 16 7 C 0.20 4.35 6.27 38.21 0.24 4.59 16 8 N -0.63 -14.98 5.32 -304.86 -1.62 -16.60 16 9 C 0.52 16.32 7.62 87.24 0.66 16.98 16 10 O -0.51 -17.43 14.16 -3.33 -0.05 -17.48 16 11 C 0.50 18.93 7.89 87.24 0.69 19.62 16 12 O -0.55 -23.36 16.48 -3.27 -0.05 -23.41 16 13 N -0.67 -28.37 5.54 -468.23 -2.59 -30.96 16 14 C 0.26 13.67 5.43 85.63 0.46 14.14 16 15 C -0.56 -29.97 9.28 25.60 0.24 -29.73 16 16 H 0.08 3.93 7.60 -2.91 -0.02 3.90 16 17 C 0.01 0.59 5.46 84.66 0.46 1.05 16 18 N -0.92 -53.42 13.29 21.45 0.28 -53.14 16 19 Si 0.98 41.85 29.54 68.60 2.03 43.87 16 20 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 21 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 22 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 23 C -0.18 -2.81 9.94 22.45 0.22 -2.59 16 24 C 0.21 2.86 7.25 22.36 0.16 3.02 16 25 F -0.10 -0.93 16.73 44.97 0.75 -0.17 16 26 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.13 3.24 7.33 -2.91 -0.02 3.22 16 30 H 0.13 3.61 6.41 -2.91 -0.02 3.59 16 31 H 0.44 8.50 8.30 -92.71 -0.77 7.74 16 32 H 0.41 16.03 7.79 -92.71 -0.72 15.31 16 33 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 35 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 36 H 0.18 1.68 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -75.93 341.02 0.03 -75.90 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -0.32 Total: 20.49 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 4.89 Total: 11.54 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -3.93 Total: -100.70 kcal Atomic # 8 Polarization: -64.51 SS G_CDS: -2.60 Total: -67.11 kcal Atomic # 9 Polarization: -0.93 SS G_CDS: 0.75 Total: -0.17 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.87 kcal Atomic # 16 Polarization: 16.96 SS G_CDS: -0.78 Total: 16.18 kcal Total: -75.93 0.03 -75.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326671976.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.021 kcal (2) G-P(sol) polarization free energy of solvation -75.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds