Wall clock time and date at job start Tue Mar 31 2020 15:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42090 * 109.47074 * 2 1 4 4 C 1.76198 * 102.99960 * 109.05671 * 2 1 3 5 5 C 1.38285 * 119.93869 * 94.99703 * 4 2 1 6 6 C 1.38079 * 120.09923 * 180.27823 * 5 4 2 7 7 C 1.38972 * 119.97693 * 359.49249 * 6 5 4 8 8 N 1.39717 * 120.06410 * 180.27867 * 7 6 5 9 9 C 1.34780 * 119.99935 * 213.58283 * 8 7 6 10 10 O 1.21378 * 119.99629 * 5.28257 * 9 8 7 11 11 C 1.49349 * 120.00023 * 185.27579 * 9 8 7 12 12 O 1.21358 * 120.00319 * 0.02562 * 11 9 8 13 13 N 1.34779 * 120.00009 * 180.02562 * 11 9 8 14 14 C 1.46499 * 120.00356 * 180.02562 * 13 11 9 15 15 C 1.50697 * 109.47292 * 179.97438 * 14 13 11 16 16 H 1.07995 * 120.00225 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99910 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00045 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99888 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46935 * 60.00341 * 19 17 15 21 21 H 1.48496 * 109.46933 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47050 * 300.00151 * 19 17 15 23 23 C 1.38871 * 119.87240 * 0.50894 * 7 6 5 24 24 C 1.38341 * 119.89788 * 359.74589 * 23 7 6 25 25 F 1.35094 * 119.98592 * 179.97438 * 24 23 7 26 26 H 1.09001 * 109.47422 * 310.94364 * 1 2 3 27 27 H 1.08998 * 109.47204 * 70.94834 * 1 2 3 28 28 H 1.08998 * 109.47095 * 190.94269 * 1 2 3 29 29 H 1.07995 * 119.94717 * 0.02562 * 5 4 2 30 30 H 1.07998 * 120.01372 * 179.74662 * 6 5 4 31 31 H 0.97002 * 120.00158 * 33.58200 * 8 7 6 32 32 H 0.97006 * 120.00009 * 359.97438 * 13 11 9 33 33 H 1.09001 * 109.46960 * 299.99874 * 14 13 11 34 34 H 1.09000 * 109.47017 * 59.98899 * 14 13 11 35 35 H 0.96999 * 120.00337 * 179.97438 * 18 17 15 36 36 H 1.07997 * 120.04737 * 179.77066 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3396 0.0000 4 6 2.2104 -0.5605 1.6227 5 6 2.4673 -1.9008 1.8464 6 6 2.7726 -2.3446 3.1178 7 6 2.8322 -1.4419 4.1727 8 7 3.1467 -1.8881 5.4588 9 6 2.5930 -1.2917 6.5332 10 8 1.7494 -0.4321 6.3825 11 6 3.0173 -1.6886 7.9090 12 8 3.8610 -2.5478 8.0596 13 7 2.4632 -1.0926 8.9834 14 6 2.8797 -1.4815 10.3330 15 6 2.1153 -0.6711 11.3478 16 1 1.3912 0.0602 11.0203 17 6 2.3395 -0.8640 12.6945 18 7 3.2208 -1.7549 13.0934 19 14 1.3914 0.1400 13.9524 20 1 -0.0634 -0.1111 13.7913 21 1 1.8129 -0.2551 15.3204 22 1 1.6705 1.5838 13.7454 23 6 2.5740 -0.0962 3.9469 24 6 2.2634 0.3420 2.6720 25 9 2.0113 1.6506 2.4505 26 1 -0.3634 0.6734 0.7762 27 1 -0.3633 0.3354 -0.9714 28 1 -0.3633 -1.0090 0.1951 29 1 2.4251 -2.6020 1.0261 30 1 2.9690 -3.3922 3.2916 31 1 3.7635 -2.6271 5.5785 32 1 1.7891 -0.4055 8.8630 33 1 2.6751 -2.5413 10.4851 34 1 3.9475 -1.2971 10.4509 35 1 3.3789 -1.8904 14.0407 36 1 2.6159 0.6072 4.7654 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326671977.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:24 Heat of formation + Delta-G solvation = -117.741833 kcal Electronic energy + Delta-G solvation = -24339.902826 eV Core-core repulsion = 20251.854321 eV Total energy + Delta-G solvation = -4088.048505 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.14314 -41.05129 -39.19712 -37.96401 -35.98262 -35.40373 -34.32508 -32.46248 -31.07737 -30.28561 -29.09689 -27.84911 -25.27334 -23.58480 -22.99212 -21.86329 -20.16049 -19.02783 -18.53587 -18.03613 -17.00437 -16.62650 -16.41629 -16.13548 -15.96589 -15.62029 -15.45073 -15.10684 -14.90195 -14.39114 -14.36489 -14.18191 -13.96287 -13.69521 -13.26249 -13.16298 -12.86562 -12.78666 -12.19556 -12.12287 -12.03198 -12.01336 -11.46531 -11.09611 -10.95282 -10.86748 -10.59117 -10.39281 -9.57597 -9.37055 -9.14098 -8.95108 -8.90415 -8.62618 -8.21997 -6.28024 -4.35967 0.31612 0.85250 1.41310 1.63591 2.29507 2.35771 3.08456 3.21251 3.25940 3.27965 3.47744 3.57013 3.74597 4.05779 4.26114 4.35677 4.64465 4.83543 4.86500 4.88072 4.96099 5.08790 5.10119 5.39717 5.52686 5.62588 5.65401 5.79155 5.96645 6.49612 6.76575 6.96272 7.03495 7.27110 7.44260 7.61809 7.79235 8.24442 8.43174 8.73576 9.30617 10.81902 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.027945 B = 0.002209 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.720824 B =12670.967049 C =13320.566899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.501 4.501 2 S 1.342 4.658 3 O -0.846 6.846 4 C -0.525 4.525 5 C 0.005 3.995 6 C -0.174 4.174 7 C 0.219 3.781 8 N -0.653 5.653 9 C 0.509 3.491 10 O -0.496 6.496 11 C 0.492 3.508 12 O -0.533 6.533 13 N -0.668 5.668 14 C 0.246 3.754 15 C -0.549 4.549 16 H 0.066 0.934 17 C 0.066 3.934 18 N -0.885 5.885 19 Si 0.907 3.093 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.274 1.274 23 C -0.179 4.179 24 C 0.185 3.815 25 F -0.118 7.118 26 H 0.082 0.918 27 H 0.106 0.894 28 H 0.112 0.888 29 H 0.152 0.848 30 H 0.143 0.857 31 H 0.429 0.571 32 H 0.405 0.595 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.268 0.732 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.436 -4.460 -28.338 28.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 1.537 4.463 3 O -0.841 6.841 4 C -0.622 4.622 5 C -0.015 4.015 6 C -0.195 4.195 7 C 0.123 3.877 8 N -0.300 5.300 9 C 0.292 3.708 10 O -0.368 6.368 11 C 0.270 3.730 12 O -0.412 6.412 13 N -0.317 5.317 14 C 0.127 3.873 15 C -0.588 4.588 16 H 0.084 0.916 17 C -0.138 4.138 18 N -0.522 5.522 19 Si 0.734 3.266 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.202 4.202 24 C 0.164 3.836 25 F -0.096 7.096 26 H 0.101 0.899 27 H 0.124 0.876 28 H 0.130 0.870 29 H 0.170 0.830 30 H 0.160 0.840 31 H 0.268 0.732 32 H 0.240 0.760 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.747 -4.198 -28.708 29.066 hybrid contribution -1.434 1.946 2.636 3.577 sum -3.181 -2.252 -26.072 26.362 Atomic orbital electron populations 1.27786 1.22512 1.08057 1.07395 1.69439 0.86199 0.99939 0.90705 1.93179 1.72903 1.37023 1.81021 1.27836 1.18164 1.00182 1.16026 1.20491 0.91873 0.92530 0.96605 1.21114 1.06373 0.99653 0.92382 1.17623 0.93848 0.91830 0.84429 1.43382 1.46534 1.37007 1.03085 1.21098 0.81060 0.81675 0.86922 1.90777 1.29479 1.29932 1.86658 1.19553 0.84175 0.84317 0.84947 1.90749 1.32432 1.31921 1.86066 1.46464 1.39690 1.38294 1.07213 1.19382 0.96686 0.96933 0.74314 1.21149 1.24085 1.22619 0.90899 0.91587 1.24935 0.95168 0.95287 0.98416 1.69946 1.32857 1.32892 1.16456 0.86408 0.80067 0.80276 0.79832 1.19934 1.20963 1.19926 1.21194 1.06137 0.95945 0.96878 1.17218 0.95222 0.78220 0.92956 1.91626 1.90527 1.32292 1.95161 0.89885 0.87566 0.86957 0.83023 0.83951 0.73154 0.76014 0.94560 0.94587 0.92189 0.83171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -2.99 10.70 101.05 1.08 -1.90 16 2 S 1.34 8.81 14.09 -107.50 -1.51 7.30 16 3 O -0.85 -11.83 15.98 -35.23 -0.56 -12.39 16 4 C -0.53 -4.78 5.60 -39.47 -0.22 -5.00 16 5 C 0.00 0.03 9.74 -39.62 -0.39 -0.36 16 6 C -0.17 -1.34 9.96 -39.37 -0.39 -1.74 16 7 C 0.22 2.54 6.28 -83.76 -0.53 2.01 16 8 N -0.65 -8.09 5.32 -10.30 -0.05 -8.15 16 9 C 0.51 8.14 7.62 -11.63 -0.09 8.05 16 10 O -0.50 -8.74 14.16 5.47 0.08 -8.66 16 11 C 0.49 9.37 7.89 -11.63 -0.09 9.28 16 12 O -0.53 -11.14 16.48 5.49 0.09 -11.05 16 13 N -0.67 -13.94 5.54 -61.94 -0.34 -14.29 16 14 C 0.25 6.23 5.43 -5.20 -0.03 6.21 16 15 C -0.55 -14.58 9.28 -34.44 -0.32 -14.90 16 16 H 0.07 1.66 7.60 -52.49 -0.40 1.26 16 17 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 18 N -0.88 -25.19 13.29 55.43 0.74 -24.45 16 19 Si 0.91 20.58 29.54 -169.99 -5.02 15.56 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 C -0.18 -2.47 8.63 -39.31 -0.34 -2.81 16 24 C 0.19 2.48 7.16 -39.45 -0.28 2.20 16 25 F -0.12 -1.91 15.30 2.25 0.03 -1.87 16 26 H 0.08 0.75 8.14 -51.92 -0.42 0.32 16 27 H 0.11 0.49 8.14 -51.92 -0.42 0.06 16 28 H 0.11 0.39 8.14 -51.92 -0.42 -0.04 16 29 H 0.15 0.09 8.06 -52.49 -0.42 -0.34 16 30 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 31 H 0.43 4.43 8.30 -40.82 -0.34 4.09 16 32 H 0.40 7.87 7.79 -40.82 -0.32 7.55 16 33 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.15 2.33 6.42 -52.49 -0.34 1.99 16 LS Contribution 340.00 15.07 5.12 5.12 Total: -1.00 -37.79 340.00 -6.61 -44.40 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -3.49 Total: 5.74 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -1.69 Total: 2.73 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.34 Total: -46.88 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -0.40 Total: -32.10 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.03 Total: -1.87 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 8.81 SS G_CDS: -1.51 Total: 7.30 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -37.79 -6.61 -44.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326671977.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.344 kcal (2) G-P(sol) polarization free energy of solvation -37.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds