Wall clock time and date at job start Tue Mar 31 2020 15:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42090 * 109.47074 * 2 1 4 4 C 1.76198 * 102.99960 * 109.05671 * 2 1 3 5 5 C 1.38285 * 119.93869 * 94.99703 * 4 2 1 6 6 C 1.38079 * 120.09923 * 180.27823 * 5 4 2 7 7 C 1.38972 * 119.97693 * 359.49249 * 6 5 4 8 8 N 1.39717 * 120.06410 * 180.27867 * 7 6 5 9 9 C 1.34780 * 119.99935 * 213.58283 * 8 7 6 10 10 O 1.21378 * 119.99629 * 5.28257 * 9 8 7 11 11 C 1.49349 * 120.00023 * 185.27579 * 9 8 7 12 12 O 1.21358 * 120.00319 * 0.02562 * 11 9 8 13 13 N 1.34779 * 120.00009 * 180.02562 * 11 9 8 14 14 C 1.46499 * 120.00356 * 180.02562 * 13 11 9 15 15 C 1.50697 * 109.47292 * 179.97438 * 14 13 11 16 16 H 1.07995 * 120.00225 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99910 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00045 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99888 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46935 * 60.00341 * 19 17 15 21 21 H 1.48496 * 109.46933 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47050 * 300.00151 * 19 17 15 23 23 C 1.38871 * 119.87240 * 0.50894 * 7 6 5 24 24 C 1.38341 * 119.89788 * 359.74589 * 23 7 6 25 25 F 1.35094 * 119.98592 * 179.97438 * 24 23 7 26 26 H 1.09001 * 109.47422 * 310.94364 * 1 2 3 27 27 H 1.08998 * 109.47204 * 70.94834 * 1 2 3 28 28 H 1.08998 * 109.47095 * 190.94269 * 1 2 3 29 29 H 1.07995 * 119.94717 * 0.02562 * 5 4 2 30 30 H 1.07998 * 120.01372 * 179.74662 * 6 5 4 31 31 H 0.97002 * 120.00158 * 33.58200 * 8 7 6 32 32 H 0.97006 * 120.00009 * 359.97438 * 13 11 9 33 33 H 1.09001 * 109.46960 * 299.99874 * 14 13 11 34 34 H 1.09000 * 109.47017 * 59.98899 * 14 13 11 35 35 H 0.96999 * 120.00337 * 179.97438 * 18 17 15 36 36 H 1.07997 * 120.04737 * 179.77066 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3396 0.0000 4 6 2.2104 -0.5605 1.6227 5 6 2.4673 -1.9008 1.8464 6 6 2.7726 -2.3446 3.1178 7 6 2.8322 -1.4419 4.1727 8 7 3.1467 -1.8881 5.4588 9 6 2.5930 -1.2917 6.5332 10 8 1.7494 -0.4321 6.3825 11 6 3.0173 -1.6886 7.9090 12 8 3.8610 -2.5478 8.0596 13 7 2.4632 -1.0926 8.9834 14 6 2.8797 -1.4815 10.3330 15 6 2.1153 -0.6711 11.3478 16 1 1.3912 0.0602 11.0203 17 6 2.3395 -0.8640 12.6945 18 7 3.2208 -1.7549 13.0934 19 14 1.3914 0.1400 13.9524 20 1 -0.0634 -0.1111 13.7913 21 1 1.8129 -0.2551 15.3204 22 1 1.6705 1.5838 13.7454 23 6 2.5740 -0.0962 3.9469 24 6 2.2634 0.3420 2.6720 25 9 2.0113 1.6506 2.4505 26 1 -0.3634 0.6734 0.7762 27 1 -0.3633 0.3354 -0.9714 28 1 -0.3633 -1.0090 0.1951 29 1 2.4251 -2.6020 1.0261 30 1 2.9690 -3.3922 3.2916 31 1 3.7635 -2.6271 5.5785 32 1 1.7891 -0.4055 8.8630 33 1 2.6751 -2.5413 10.4851 34 1 3.9475 -1.2971 10.4509 35 1 3.3789 -1.8904 14.0407 36 1 2.6159 0.6072 4.7654 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326671977.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:24 Heat of formation + Delta-G solvation = -149.426333 kcal Electronic energy + Delta-G solvation = -24341.276769 eV Core-core repulsion = 20251.854321 eV Total energy + Delta-G solvation = -4089.422448 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.20539 -42.28227 -40.44175 -39.23832 -36.86949 -36.76129 -35.89923 -34.42480 -31.89050 -31.17208 -29.79514 -29.57366 -26.71809 -24.84556 -24.10123 -23.20787 -21.60018 -20.40121 -19.41768 -18.98528 -18.43779 -17.86502 -17.54121 -17.29196 -17.09333 -16.93110 -16.82435 -16.64823 -15.98677 -15.62747 -15.57013 -15.14068 -15.00434 -14.75753 -14.41113 -14.11707 -14.05190 -13.90533 -13.66299 -13.48947 -13.18854 -13.01294 -12.74533 -12.73164 -12.66961 -12.27002 -11.82799 -11.60030 -11.40972 -10.88158 -10.86270 -10.13216 -10.01130 -9.76293 -9.38593 -8.35350 -6.51614 -0.55577 0.03971 0.27036 0.87542 1.11064 1.41520 1.43862 1.52542 1.69770 1.93572 2.31140 2.39517 2.52074 2.92004 2.99955 3.12925 3.33267 3.66308 3.93631 4.10156 4.27007 4.32284 4.53070 4.60894 4.80532 4.91568 4.94307 5.00861 5.07944 5.12654 5.17753 5.18561 5.44373 5.69912 5.72861 5.78710 6.34567 6.50247 6.60623 6.89393 7.21054 8.75908 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.027945 B = 0.002209 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.720824 B =12670.967049 C =13320.566899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.502 4.502 2 S 1.423 4.577 3 O -0.922 6.922 4 C -0.523 4.523 5 C 0.028 3.972 6 C -0.152 4.152 7 C 0.193 3.807 8 N -0.633 5.633 9 C 0.520 3.480 10 O -0.516 6.516 11 C 0.496 3.504 12 O -0.551 6.551 13 N -0.673 5.673 14 C 0.264 3.736 15 C -0.566 4.566 16 H 0.077 0.923 17 C 0.013 3.987 18 N -0.923 5.923 19 Si 0.981 3.019 20 H -0.264 1.264 21 H -0.280 1.280 22 H -0.267 1.267 23 C -0.205 4.205 24 C 0.141 3.859 25 F -0.148 7.148 26 H 0.049 0.951 27 H 0.124 0.876 28 H 0.149 0.851 29 H 0.225 0.775 30 H 0.185 0.815 31 H 0.440 0.560 32 H 0.412 0.588 33 H 0.010 0.990 34 H 0.006 0.994 35 H 0.272 0.728 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.558 -6.582 -30.941 31.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.660 4.660 2 S 1.618 4.382 3 O -0.918 6.918 4 C -0.619 4.619 5 C 0.010 3.990 6 C -0.173 4.173 7 C 0.098 3.902 8 N -0.281 5.281 9 C 0.302 3.698 10 O -0.391 6.391 11 C 0.275 3.725 12 O -0.430 6.430 13 N -0.323 5.323 14 C 0.142 3.858 15 C -0.603 4.603 16 H 0.095 0.905 17 C -0.188 4.188 18 N -0.560 5.560 19 Si 0.804 3.196 20 H -0.189 1.189 21 H -0.205 1.205 22 H -0.191 1.191 23 C -0.227 4.227 24 C 0.120 3.880 25 F -0.126 7.126 26 H 0.069 0.931 27 H 0.142 0.858 28 H 0.167 0.833 29 H 0.242 0.758 30 H 0.203 0.797 31 H 0.282 0.718 32 H 0.248 0.752 33 H 0.028 0.972 34 H 0.024 0.976 35 H 0.081 0.919 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.841 -6.332 -31.365 32.124 hybrid contribution -1.089 2.490 3.252 4.238 sum -3.930 -3.842 -28.113 28.645 Atomic orbital electron populations 1.27823 1.21175 1.09644 1.07356 1.68449 0.85544 0.96548 0.87617 1.93047 1.75640 1.41036 1.82106 1.28327 1.16811 1.01042 1.15683 1.21400 0.87904 0.91860 0.97859 1.21703 1.03326 1.00824 0.91475 1.17881 0.95889 0.91728 0.84660 1.43139 1.45841 1.36366 1.02714 1.20279 0.81353 0.81873 0.86271 1.90788 1.30687 1.30970 1.86625 1.20032 0.83160 0.83270 0.85997 1.90727 1.33000 1.32522 1.86775 1.46200 1.40522 1.39155 1.06401 1.18856 0.94944 0.95378 0.76614 1.21522 1.24354 1.22907 0.91542 0.90467 1.25928 0.95988 0.96288 1.00620 1.70075 1.34396 1.34493 1.17084 0.85266 0.78820 0.78658 0.76878 1.18882 1.20547 1.19138 1.21061 1.08295 0.96861 0.96474 1.17680 0.98119 0.77940 0.94254 1.91545 1.91240 1.34507 1.95335 0.93140 0.85763 0.83291 0.75849 0.79744 0.71825 0.75165 0.97233 0.97568 0.91939 0.86500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -4.51 10.70 113.37 1.21 -3.30 16 2 S 1.42 15.15 14.09 -56.49 -0.80 14.35 16 3 O -0.92 -25.89 15.98 -148.98 -2.38 -28.27 16 4 C -0.52 -8.18 5.60 22.34 0.13 -8.06 16 5 C 0.03 0.18 9.74 22.24 0.22 0.39 16 6 C -0.15 -1.63 9.96 22.41 0.22 -1.40 16 7 C 0.19 4.21 6.28 38.21 0.24 4.45 16 8 N -0.63 -15.14 5.32 -304.85 -1.62 -16.77 16 9 C 0.52 16.91 7.62 87.24 0.66 17.58 16 10 O -0.52 -18.89 14.16 -3.33 -0.05 -18.94 16 11 C 0.50 19.41 7.89 87.24 0.69 20.10 16 12 O -0.55 -23.53 16.48 -3.27 -0.05 -23.59 16 13 N -0.67 -29.19 5.54 -468.25 -2.59 -31.79 16 14 C 0.26 13.93 5.43 85.63 0.46 14.39 16 15 C -0.57 -30.61 9.28 25.60 0.24 -30.37 16 16 H 0.08 3.91 7.60 -2.91 -0.02 3.89 16 17 C 0.01 0.69 5.46 84.66 0.46 1.15 16 18 N -0.92 -53.70 13.29 21.45 0.28 -53.42 16 19 Si 0.98 42.24 29.54 68.60 2.03 44.26 16 20 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 21 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 22 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 23 C -0.20 -5.88 8.63 22.45 0.19 -5.69 16 24 C 0.14 3.87 7.16 22.36 0.16 4.03 16 25 F -0.15 -5.17 15.30 44.97 0.69 -4.49 16 26 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.15 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.22 -1.79 8.06 -2.91 -0.02 -1.81 16 30 H 0.19 0.51 8.06 -2.91 -0.02 0.48 16 31 H 0.44 8.35 8.30 -92.71 -0.77 7.58 16 32 H 0.41 16.59 7.79 -92.70 -0.72 15.87 16 33 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 36 H 0.12 4.03 6.42 -2.91 -0.02 4.01 16 Total: -1.00 -90.41 340.00 0.07 -90.34 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -0.33 Total: 15.02 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: 4.89 Total: 13.27 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -3.93 Total: -101.97 kcal Atomic # 8 Polarization: -68.31 SS G_CDS: -2.48 Total: -70.79 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.69 Total: -4.49 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 16 Polarization: 15.15 SS G_CDS: -0.80 Total: 14.35 kcal Total: -90.41 0.07 -90.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326671977.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.085 kcal (2) G-P(sol) polarization free energy of solvation -90.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds