Wall clock time and date at job start Tue Mar 31 2020 15:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81399 * 107.16634 * 2 1 4 4 O 1.42099 * 113.53995 * 233.80244 * 2 1 3 5 5 N 1.49345 * 107.52381 * 115.34141 * 2 1 3 6 6 C 1.32369 * 120.00101 * 64.89320 * 5 2 1 7 7 C 1.41820 * 120.66691 * 359.97438 * 6 5 2 8 8 C 1.36025 * 119.80139 * 179.97438 * 7 6 5 9 9 C 1.39079 * 121.28715 * 359.97438 * 8 7 6 10 10 C 1.38178 * 121.40330 * 0.02562 * 9 8 7 11 11 C 1.38654 * 120.07654 * 0.02562 * 10 9 8 12 12 N 1.38732 * 120.61972 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99773 * 24.76168 * 12 11 10 14 14 O 1.21274 * 120.00251 * 5.53831 * 13 12 11 15 15 C 1.50707 * 119.99824 * 185.54453 * 13 12 11 16 16 S 1.81000 * 109.47133 * 180.02562 * 15 13 12 17 17 C 1.76196 * 99.99936 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00231 * 359.97438 * 17 16 15 19 19 C 1.38798 * 120.00051 * 180.02562 * 17 16 15 20 20 N 1.31632 * 119.99710 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00180 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47050 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46899 * 119.99930 * 21 19 17 24 24 H 1.48499 * 109.47312 * 239.99635 * 21 19 17 25 25 H 1.09003 * 109.47040 * 306.19788 * 1 2 3 26 26 H 1.08997 * 109.47349 * 66.19756 * 1 2 3 27 27 H 1.09004 * 109.47014 * 186.19672 * 1 2 3 28 28 H 1.09002 * 109.46628 * 175.34476 * 3 2 1 29 29 H 1.09004 * 109.46920 * 295.33893 * 3 2 1 30 30 H 1.08995 * 109.47265 * 55.33994 * 3 2 1 31 31 H 1.08004 * 120.09988 * 359.97438 * 7 6 5 32 32 H 1.08004 * 119.35697 * 180.02562 * 8 7 6 33 33 H 1.07995 * 119.29372 * 180.02562 * 9 8 7 34 34 H 1.08008 * 119.95867 * 179.74391 * 10 9 8 35 35 H 0.96996 * 119.99806 * 204.75843 * 12 11 10 36 36 H 1.09001 * 109.46809 * 299.99321 * 15 13 12 37 37 H 1.08993 * 109.47055 * 59.99819 * 15 13 12 38 38 H 0.97007 * 119.99857 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.3494 1.7332 0.0000 4 8 2.3815 -0.7694 -1.0513 5 7 2.2637 -0.6095 1.2871 6 6 1.9991 -1.8805 1.5456 7 6 1.2892 -2.6763 0.6107 8 6 1.0274 -3.9806 0.8942 9 6 1.4434 -4.5576 2.0893 10 6 2.1384 -3.8301 3.0364 11 6 2.4353 -2.4953 2.8071 12 7 3.1329 -1.7544 3.7501 13 6 3.9453 -2.3752 4.6281 14 8 4.1450 -3.5675 4.5312 15 6 4.6054 -1.5878 5.7306 16 16 5.6265 -2.6948 6.7346 17 6 6.2598 -1.5449 7.9099 18 1 5.9777 -0.5040 7.8530 19 6 7.1221 -1.9767 8.9081 20 7 7.4663 -3.2453 8.9771 21 14 7.7941 -0.7575 10.1537 22 1 7.2581 0.5959 9.8605 23 1 7.3812 -1.1675 11.5200 24 1 9.2765 -0.7320 10.0714 25 1 -0.3633 0.6069 0.8293 26 1 -0.3634 0.4147 -0.9402 27 1 -0.3633 -1.0217 0.1109 28 1 3.4353 1.7779 0.0834 29 1 2.0364 2.2101 -0.9288 30 1 1.8983 2.2528 0.8452 31 1 0.9575 -2.2479 -0.3237 32 1 0.4866 -4.5801 0.1768 33 1 1.2185 -5.5963 2.2810 34 1 2.4467 -4.3006 3.9585 35 1 3.0359 -0.7897 3.7773 36 1 5.2330 -0.8099 5.2958 37 1 3.8408 -1.1296 6.3578 38 1 8.0693 -3.5471 9.6746 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332494852.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:19 Heat of formation + Delta-G solvation = -14.306309 kcal Electronic energy + Delta-G solvation = -22687.162415 eV Core-core repulsion = 19169.812387 eV Total energy + Delta-G solvation = -3517.350028 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.36393 -39.54235 -37.51243 -35.93296 -35.68728 -34.57455 -31.91720 -30.82421 -30.50317 -29.68728 -28.51223 -27.62607 -24.11988 -23.21693 -21.47166 -19.97353 -19.60017 -18.70223 -18.17359 -17.79719 -16.93433 -16.87349 -16.71570 -16.59397 -16.14940 -15.52195 -15.33245 -14.99168 -14.71799 -14.46645 -14.39244 -14.10064 -14.02828 -13.91043 -13.75255 -13.55401 -13.16122 -13.12260 -12.90470 -12.75512 -12.59279 -12.40540 -12.05928 -11.72270 -11.60497 -11.44395 -11.14758 -10.92870 -10.42910 -10.26824 -9.35853 -8.66789 -8.33563 -7.96048 -6.12072 -1.45483 0.41738 0.55802 1.26083 1.42940 1.46969 1.58882 1.61680 1.65984 2.10255 2.26608 2.29177 2.80841 3.00618 3.18734 3.32164 3.79642 3.89471 4.01396 4.05227 4.07636 4.11863 4.22443 4.28005 4.42677 4.48566 4.58647 4.64083 4.84846 4.92845 4.98250 5.20248 5.43261 5.44298 5.68021 5.79789 5.91782 6.21313 6.40074 6.59660 7.07390 7.23445 8.76071 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.019289 B = 0.002750 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.262072 B =10178.367738 C =11336.044579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.630 4.630 2 S 2.256 3.744 3 C -0.498 4.498 4 O -0.994 6.994 5 N -1.111 6.111 6 C 0.226 3.774 7 C -0.264 4.264 8 C -0.082 4.082 9 C -0.180 4.180 10 C -0.115 4.115 11 C 0.080 3.920 12 N -0.629 5.629 13 C 0.524 3.476 14 O -0.546 6.546 15 C -0.124 4.124 16 S -0.148 6.148 17 C -0.545 4.545 18 H 0.085 0.915 19 C 0.011 3.989 20 N -0.912 5.912 21 Si 1.002 2.998 22 H -0.255 1.255 23 H -0.274 1.274 24 H -0.274 1.274 25 H 0.161 0.839 26 H 0.158 0.842 27 H 0.122 0.878 28 H 0.147 0.853 29 H 0.180 0.820 30 H 0.180 0.820 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.128 0.872 34 H 0.116 0.884 35 H 0.425 0.575 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.910 17.481 -22.546 34.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.786 4.786 2 S 2.458 3.542 3 C -0.658 4.658 4 O -0.980 6.980 5 N -0.990 5.990 6 C 0.112 3.888 7 C -0.289 4.289 8 C -0.101 4.101 9 C -0.201 4.201 10 C -0.136 4.136 11 C -0.022 4.022 12 N -0.273 5.273 13 C 0.311 3.689 14 O -0.423 6.423 15 C -0.275 4.275 16 S 0.079 5.921 17 C -0.693 4.693 18 H 0.103 0.897 19 C -0.193 4.193 20 N -0.549 5.549 21 Si 0.824 3.176 22 H -0.178 1.178 23 H -0.199 1.199 24 H -0.200 1.200 25 H 0.179 0.821 26 H 0.176 0.824 27 H 0.141 0.859 28 H 0.165 0.835 29 H 0.197 0.803 30 H 0.198 0.802 31 H 0.156 0.844 32 H 0.161 0.839 33 H 0.146 0.854 34 H 0.134 0.866 35 H 0.264 0.736 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.745 15.403 -22.855 33.331 hybrid contribution -0.130 1.450 0.837 1.679 sum -18.874 16.852 -22.018 33.541 Atomic orbital electron populations 1.30157 1.21215 1.12984 1.14198 1.14049 0.81991 0.84435 0.73693 1.28852 1.14156 1.06759 1.16060 1.93561 1.75362 1.67118 1.61930 1.69172 1.59477 1.23148 1.47165 1.18138 0.93602 0.86988 0.90088 1.21804 1.09616 0.97620 0.99872 1.20603 0.98486 0.94571 0.96461 1.21021 1.03289 1.00503 0.95238 1.21229 0.98325 0.93432 1.00615 1.18827 1.01692 0.92272 0.89434 1.42571 1.42564 1.11651 1.30528 1.20348 0.78233 0.87715 0.82578 1.90648 1.61533 1.16925 1.73239 1.23318 1.03084 1.02701 0.98371 1.85631 1.57599 1.15457 1.33424 1.23244 1.33586 0.96599 1.15841 0.89708 1.26174 0.95651 0.97924 0.99573 1.70205 1.33975 1.16677 1.34039 0.84858 0.77808 0.78046 0.76913 1.17825 1.19929 1.19985 0.82077 0.82389 0.85946 0.83518 0.80264 0.80243 0.84368 0.83947 0.85407 0.86589 0.73617 0.87030 0.86715 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -0.81 10.23 113.37 1.16 0.35 16 2 S 2.26 19.96 4.30 -56.49 -0.24 19.72 16 3 C -0.50 2.07 10.89 113.37 1.23 3.31 16 4 O -0.99 -21.20 16.18 -148.98 -2.41 -23.61 16 5 N -1.11 -22.35 9.76 -49.29 -0.48 -22.83 16 6 C 0.23 6.48 6.54 42.23 0.28 6.75 16 7 C -0.26 -6.85 7.50 22.64 0.17 -6.68 16 8 C -0.08 -2.17 9.91 21.96 0.22 -1.96 16 9 C -0.18 -5.64 10.00 22.46 0.22 -5.41 16 10 C -0.11 -4.33 8.71 22.35 0.19 -4.14 16 11 C 0.08 2.84 6.68 40.43 0.27 3.11 16 12 N -0.63 -21.61 5.27 -297.96 -1.57 -23.18 16 13 C 0.52 22.28 7.65 87.66 0.67 22.95 16 14 O -0.55 -27.95 13.04 -3.01 -0.04 -27.99 16 15 C -0.12 -5.26 6.16 71.24 0.44 -4.82 16 16 S -0.15 -8.54 20.57 -56.49 -1.16 -9.70 16 17 C -0.54 -31.71 9.50 67.95 0.65 -31.07 16 18 H 0.08 4.56 7.80 -2.91 -0.02 4.54 16 19 C 0.01 0.65 5.49 84.86 0.47 1.12 16 20 N -0.91 -57.12 13.22 21.65 0.29 -56.84 16 21 Si 1.00 44.14 29.55 68.60 2.03 46.17 16 22 H -0.25 -10.39 7.11 99.48 0.71 -9.68 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 25 H 0.16 -0.60 8.14 -2.39 -0.02 -0.62 16 26 H 0.16 -0.86 8.14 -2.39 -0.02 -0.88 16 27 H 0.12 0.78 5.92 -2.39 -0.01 0.77 16 28 H 0.15 -0.27 8.14 -2.39 -0.02 -0.29 16 29 H 0.18 -2.08 8.14 -2.39 -0.02 -2.10 16 30 H 0.18 -1.78 8.14 -2.39 -0.02 -1.80 16 31 H 0.14 2.82 4.66 -2.91 -0.01 2.81 16 32 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 33 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 34 H 0.12 5.04 5.82 -2.91 -0.02 5.02 16 35 H 0.43 11.49 8.47 -92.71 -0.79 10.70 16 36 H 0.11 4.26 8.14 -2.40 -0.02 4.24 16 37 H 0.11 4.33 8.14 -2.40 -0.02 4.31 16 38 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 Total: -1.00 -101.28 346.60 2.69 -98.59 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 0.31 Total: 16.16 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: 5.97 Total: -16.49 kcal Atomic # 7 Polarization: -101.08 SS G_CDS: -1.77 Total: -102.85 kcal Atomic # 8 Polarization: -49.15 SS G_CDS: -2.45 Total: -51.60 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: 11.42 SS G_CDS: -1.41 Total: 10.02 kcal Total: -101.28 2.69 -98.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332494852.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.286 kcal (2) G-P(sol) polarization free energy of solvation -101.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds