Wall clock time and date at job start Tue Mar 31 2020 14:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43191 * 179.97438 * 2 1 4 4 C 1.34872 * 125.05542 * 231.95057 * 3 2 1 5 5 C 1.39071 * 113.62603 * 180.02562 * 4 3 2 6 6 C 1.47313 * 122.96819 * 180.02562 * 5 4 3 7 7 O 1.21624 * 119.99652 * 359.96866 * 6 5 4 8 8 N 1.34774 * 120.00542 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00291 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.47223 * 180.02562 * 9 8 6 11 11 C 1.38321 * 119.96401 * 269.72651 * 10 9 8 12 12 C 1.38287 * 120.13596 * 179.76881 * 11 10 9 13 13 C 1.38114 * 120.06967 * 0.50674 * 12 11 10 14 14 C 1.38862 * 119.93097 * 359.74564 * 13 12 11 15 15 O 1.35754 * 120.06882 * 179.97438 * 14 13 12 16 16 C 1.34826 * 116.99650 * 354.48422 * 15 14 13 17 17 H 1.08000 * 120.00404 * 5.06317 * 16 15 14 18 18 C 1.38656 * 119.99629 * 185.06252 * 16 15 14 19 19 N 1.31558 * 120.00198 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00202 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46942 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47331 * 119.99431 * 20 18 16 23 23 H 1.48496 * 109.47166 * 239.99962 * 20 18 16 24 24 C 1.38075 * 119.96500 * 89.99962 * 10 9 8 25 25 C 1.36572 * 114.07356 * 359.97438 * 5 4 3 26 26 S 1.70596 * 110.54946 * 0.23011 * 25 5 4 27 27 H 1.08001 * 123.18678 * 0.02562 * 4 3 2 28 28 H 0.97003 * 119.99680 * 359.97438 * 8 6 5 29 29 H 1.08998 * 109.46929 * 300.00144 * 9 8 6 30 30 H 1.09002 * 109.47005 * 59.99731 * 9 8 6 31 31 H 1.07998 * 119.93181 * 359.97438 * 11 10 9 32 32 H 1.07997 * 119.96205 * 180.25148 * 12 11 10 33 33 H 1.07995 * 120.03609 * 179.77397 * 13 12 11 34 34 H 0.96999 * 120.00332 * 180.02562 * 19 18 16 35 35 H 1.08003 * 120.03977 * 359.95495 * 24 10 9 36 36 H 1.07993 * 124.72447 * 179.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3423 0.6815 0.8694 5 6 4.7055 0.5127 0.6521 6 6 5.7359 1.1615 1.4812 7 8 5.4084 1.8831 2.4039 8 7 7.0414 0.9557 1.2174 9 6 8.0660 1.6014 2.0416 10 6 9.4329 1.2112 1.5411 11 6 10.0628 0.0916 2.0541 12 6 11.3150 -0.2724 1.5939 13 6 11.9450 0.4872 0.6278 14 6 11.3175 1.6147 0.1146 15 8 11.9345 2.3637 -0.8348 16 6 13.2002 2.0261 -1.1538 17 1 13.6493 1.1442 -0.7212 18 6 13.9253 2.8110 -2.0373 19 7 13.3782 3.8849 -2.5646 20 14 15.6788 2.3430 -2.4799 21 1 16.0569 1.1014 -1.7580 22 1 15.7754 2.1138 -3.9439 23 1 16.5981 3.4417 -2.0890 24 6 10.0575 1.9748 0.5750 25 6 5.0048 -0.3086 -0.3973 26 16 3.5775 -0.8805 -1.1362 27 1 2.9417 1.2992 1.6596 28 1 7.3026 0.3799 0.4816 29 1 7.9525 2.6838 1.9805 30 1 7.9532 1.2822 3.0777 31 1 9.5742 -0.5012 2.8131 32 1 11.8025 -1.1494 1.9935 33 1 12.9245 0.2045 0.2714 34 1 13.8853 4.4339 -3.1830 35 1 9.5667 2.8509 0.1775 36 1 6.0057 -0.5578 -0.7174 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361489041.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:13 Heat of formation + Delta-G solvation = 25.074406 kcal Electronic energy + Delta-G solvation = -22793.822434 eV Core-core repulsion = 19142.736131 eV Total energy + Delta-G solvation = -3651.086303 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.28958 -39.19002 -37.98345 -36.89981 -36.52136 -34.67900 -32.40081 -31.46594 -30.27182 -29.17626 -26.45487 -25.73777 -25.17950 -22.81791 -21.77640 -20.91491 -19.99974 -19.53824 -17.93817 -17.42262 -17.15084 -16.44849 -15.67292 -15.57773 -15.15977 -14.77647 -14.64781 -14.41636 -14.36856 -14.12178 -13.69181 -13.62638 -13.36986 -13.13485 -12.96388 -12.85637 -12.67377 -12.47866 -12.19070 -11.73602 -11.66621 -11.44703 -11.01585 -10.88990 -10.76954 -10.51072 -10.15236 -9.47774 -9.47131 -9.24757 -9.00534 -8.95204 -8.33006 -7.40172 -6.54897 -4.14527 -0.13209 0.61317 1.20192 1.28365 1.80994 2.19198 2.45356 2.78625 3.04397 3.07446 3.12886 3.15337 3.17948 3.52234 3.87451 4.40638 4.44897 4.66703 4.70564 4.86829 5.00731 5.17906 5.21455 5.41952 5.47402 5.62795 5.66324 5.77283 5.84971 6.00636 6.17968 6.31656 6.47912 6.74115 6.92946 6.99598 7.10575 7.20276 7.28925 7.40347 7.63741 7.89081 8.06699 8.90542 9.58379 10.62729 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.018944 B = 0.002185 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.650430 B =12809.896706 C =13435.438879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C 0.283 3.717 3 C -0.178 4.178 4 C -0.012 4.012 5 C -0.153 4.153 6 C 0.575 3.425 7 O -0.537 6.537 8 N -0.712 5.712 9 C 0.168 3.832 10 C -0.075 4.075 11 C -0.195 4.195 12 C -0.076 4.076 13 C -0.225 4.225 14 C 0.150 3.850 15 O -0.175 6.175 16 C -0.394 4.394 17 H 0.093 0.907 18 C 0.040 3.960 19 N -0.860 5.860 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.171 4.171 25 C -0.196 4.196 26 S 0.290 5.710 27 H 0.164 0.836 28 H 0.402 0.598 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.128 0.872 34 H 0.271 0.729 35 H 0.119 0.881 36 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.488 -10.791 3.310 17.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.080 5.080 2 C -0.033 4.033 3 C -0.298 4.298 4 C -0.046 4.046 5 C -0.170 4.170 6 C 0.359 3.641 7 O -0.415 6.415 8 N -0.363 5.363 9 C 0.046 3.954 10 C -0.076 4.076 11 C -0.215 4.215 12 C -0.094 4.094 13 C -0.244 4.244 14 C 0.096 3.904 15 O -0.079 6.079 16 C -0.470 4.470 17 H 0.111 0.889 18 C -0.165 4.165 19 N -0.494 5.494 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.191 4.191 25 C -0.336 4.336 26 S 0.558 5.442 27 H 0.182 0.818 28 H 0.237 0.763 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.146 0.854 34 H 0.081 0.919 35 H 0.137 0.863 36 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -15.749 -10.842 2.420 19.273 hybrid contribution 2.080 0.408 0.606 2.205 sum -13.669 -10.434 3.026 17.460 Atomic orbital electron populations 1.81322 1.11085 1.08175 1.07409 1.24208 0.90819 0.94010 0.94254 1.19878 0.89652 1.12910 1.07367 1.20326 0.90835 0.95970 0.97498 1.19054 0.94254 1.03921 0.99784 1.17522 0.82053 0.80925 0.83579 1.90815 1.81655 1.38242 1.30796 1.45978 1.05002 1.50289 1.35043 1.20204 0.83266 0.97831 0.94110 1.19242 0.94627 0.96144 0.97557 1.20486 0.97045 0.99355 1.04593 1.20753 0.94564 0.98210 0.95894 1.21253 1.02511 0.98148 1.02536 1.19331 0.92138 0.90474 0.88485 1.83982 1.27666 1.49819 1.46398 1.21373 0.86706 1.11320 1.27561 0.88947 1.25308 0.99990 0.95129 0.96066 1.70040 1.37308 1.13868 1.28196 0.85641 0.80326 0.78757 0.78671 1.19073 1.20093 1.20077 1.20096 0.95177 1.02488 1.01303 1.26301 1.05736 1.01619 0.99946 1.83273 0.91765 1.42170 1.26981 0.81824 0.76291 0.90500 0.90590 0.87442 0.87264 0.85448 0.91943 0.86329 0.79813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.63 18.54 41.84 0.78 -3.86 16 2 C 0.28 2.64 15.79 -22.48 -0.35 2.29 16 3 C -0.18 -1.34 6.24 -38.85 -0.24 -1.59 16 4 C -0.01 -0.10 9.71 -40.47 -0.39 -0.49 16 5 C -0.15 -1.35 5.82 -106.50 -0.62 -1.97 16 6 C 0.57 6.81 7.79 -12.57 -0.10 6.71 16 7 O -0.54 -8.23 16.69 5.26 0.09 -8.14 16 8 N -0.71 -7.95 5.51 -62.60 -0.35 -8.29 16 9 C 0.17 2.19 5.80 -5.19 -0.03 2.16 16 10 C -0.08 -1.15 5.25 -104.65 -0.55 -1.70 16 11 C -0.20 -2.91 9.70 -39.53 -0.38 -3.29 16 12 C -0.08 -1.23 10.04 -39.61 -0.40 -1.63 16 13 C -0.22 -4.43 9.17 -39.40 -0.36 -4.79 16 14 C 0.15 3.31 6.65 -39.10 -0.26 3.05 16 15 O -0.18 -4.70 9.76 0.05 0.00 -4.70 16 16 C -0.39 -10.41 9.49 30.89 0.29 -10.12 16 17 H 0.09 2.25 5.20 -52.49 -0.27 1.98 16 18 C 0.04 1.05 5.49 -17.51 -0.10 0.95 16 19 N -0.86 -24.25 13.67 55.48 0.76 -23.49 16 20 Si 0.94 19.61 29.55 -169.99 -5.02 14.59 16 21 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 23 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 24 C -0.17 -3.21 9.64 -39.39 -0.38 -3.59 16 25 C -0.20 -1.21 10.40 30.13 0.31 -0.90 16 26 S 0.29 1.53 23.03 -107.50 -2.48 -0.94 16 27 H 0.16 1.37 7.99 -52.49 -0.42 0.95 16 28 H 0.40 3.72 6.92 -40.82 -0.28 3.44 16 29 H 0.08 1.06 8.08 -51.93 -0.42 0.64 16 30 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 31 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 33 H 0.13 2.54 5.64 -52.49 -0.30 2.25 16 34 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.12 2.21 8.06 -52.48 -0.42 1.78 16 36 H 0.18 0.77 6.98 -52.49 -0.37 0.40 16 LS Contribution 346.42 15.07 5.22 5.22 Total: -1.00 -31.86 346.42 -7.44 -39.30 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -2.88 Total: 5.23 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -3.56 Total: -14.90 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 1.19 Total: -35.64 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.09 Total: -12.84 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.48 Total: -0.94 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.86 -7.44 -39.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361489041.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.373 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds