Wall clock time and date at job start Tue Mar 31 2020 14:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43191 * 179.97438 * 2 1 4 4 C 1.34872 * 125.05542 * 231.95057 * 3 2 1 5 5 C 1.39071 * 113.62603 * 180.02562 * 4 3 2 6 6 C 1.47313 * 122.96819 * 180.02562 * 5 4 3 7 7 O 1.21624 * 119.99652 * 359.96866 * 6 5 4 8 8 N 1.34774 * 120.00542 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00291 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.47223 * 180.02562 * 9 8 6 11 11 C 1.38321 * 119.96401 * 269.72651 * 10 9 8 12 12 C 1.38287 * 120.13596 * 179.76881 * 11 10 9 13 13 C 1.38114 * 120.06967 * 0.50674 * 12 11 10 14 14 C 1.38862 * 119.93097 * 359.74564 * 13 12 11 15 15 O 1.35754 * 120.06882 * 179.97438 * 14 13 12 16 16 C 1.34826 * 116.99650 * 354.48422 * 15 14 13 17 17 H 1.08000 * 120.00404 * 5.06317 * 16 15 14 18 18 C 1.38656 * 119.99629 * 185.06252 * 16 15 14 19 19 N 1.31558 * 120.00198 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00202 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46942 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47331 * 119.99431 * 20 18 16 23 23 H 1.48496 * 109.47166 * 239.99962 * 20 18 16 24 24 C 1.38075 * 119.96500 * 89.99962 * 10 9 8 25 25 C 1.36572 * 114.07356 * 359.97438 * 5 4 3 26 26 S 1.70596 * 110.54946 * 0.23011 * 25 5 4 27 27 H 1.08001 * 123.18678 * 0.02562 * 4 3 2 28 28 H 0.97003 * 119.99680 * 359.97438 * 8 6 5 29 29 H 1.08998 * 109.46929 * 300.00144 * 9 8 6 30 30 H 1.09002 * 109.47005 * 59.99731 * 9 8 6 31 31 H 1.07998 * 119.93181 * 359.97438 * 11 10 9 32 32 H 1.07997 * 119.96205 * 180.25148 * 12 11 10 33 33 H 1.07995 * 120.03609 * 179.77397 * 13 12 11 34 34 H 0.96999 * 120.00332 * 180.02562 * 19 18 16 35 35 H 1.08003 * 120.03977 * 359.95495 * 24 10 9 36 36 H 1.07993 * 124.72447 * 179.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3423 0.6815 0.8694 5 6 4.7055 0.5127 0.6521 6 6 5.7359 1.1615 1.4812 7 8 5.4084 1.8831 2.4039 8 7 7.0414 0.9557 1.2174 9 6 8.0660 1.6014 2.0416 10 6 9.4329 1.2112 1.5411 11 6 10.0628 0.0916 2.0541 12 6 11.3150 -0.2724 1.5939 13 6 11.9450 0.4872 0.6278 14 6 11.3175 1.6147 0.1146 15 8 11.9345 2.3637 -0.8348 16 6 13.2002 2.0261 -1.1538 17 1 13.6493 1.1442 -0.7212 18 6 13.9253 2.8110 -2.0373 19 7 13.3782 3.8849 -2.5646 20 14 15.6788 2.3430 -2.4799 21 1 16.0569 1.1014 -1.7580 22 1 15.7754 2.1138 -3.9439 23 1 16.5981 3.4417 -2.0890 24 6 10.0575 1.9748 0.5750 25 6 5.0048 -0.3086 -0.3973 26 16 3.5775 -0.8805 -1.1362 27 1 2.9417 1.2992 1.6596 28 1 7.3026 0.3799 0.4816 29 1 7.9525 2.6838 1.9805 30 1 7.9532 1.2822 3.0777 31 1 9.5742 -0.5012 2.8131 32 1 11.8025 -1.1494 1.9935 33 1 12.9245 0.2045 0.2714 34 1 13.8853 4.4339 -3.1830 35 1 9.5667 2.8509 0.1775 36 1 6.0057 -0.5578 -0.7174 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361489041.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:12 Heat of formation + Delta-G solvation = 4.813237 kcal Electronic energy + Delta-G solvation = -22794.701025 eV Core-core repulsion = 19142.736131 eV Total energy + Delta-G solvation = -3651.964893 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.23191 -40.66933 -38.85385 -38.32050 -37.33601 -35.80770 -34.26504 -32.54634 -31.24644 -30.61840 -27.68126 -27.05361 -26.31985 -23.74463 -23.19929 -22.34315 -20.90289 -20.14431 -19.51708 -18.83088 -18.12499 -17.40032 -16.80021 -16.59006 -16.50430 -16.08352 -16.03924 -15.51565 -15.35907 -15.26594 -14.96384 -14.85354 -14.34236 -14.14289 -13.94665 -13.79644 -13.70391 -13.54628 -13.50502 -13.19300 -13.01301 -12.55113 -12.33770 -12.24154 -12.22281 -12.07164 -11.20249 -11.10767 -10.79760 -10.21172 -10.03309 -9.73051 -9.61491 -9.00087 -8.45271 -6.13296 -0.71125 0.06648 0.41094 0.55329 0.65943 0.74049 1.37660 1.45024 1.55188 1.71439 2.02357 2.18492 2.22131 2.37704 2.78866 2.90034 3.18595 3.43594 3.81696 3.90291 3.99420 4.11435 4.13688 4.34811 4.45858 4.56770 4.57229 4.72503 4.77446 4.84713 5.00534 5.05314 5.14776 5.29420 5.34608 5.65968 5.74152 5.75566 6.04088 6.20052 6.28118 6.52427 7.00086 7.17528 7.80820 8.77865 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.018944 B = 0.002185 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.650430 B =12809.896706 C =13435.438879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.304 3.696 3 C -0.196 4.196 4 C -0.014 4.014 5 C -0.178 4.178 6 C 0.577 3.423 7 O -0.579 6.579 8 N -0.706 5.706 9 C 0.174 3.826 10 C -0.058 4.058 11 C -0.166 4.166 12 C -0.070 4.070 13 C -0.234 4.234 14 C 0.111 3.889 15 O -0.232 6.232 16 C -0.410 4.410 17 H 0.104 0.896 18 C -0.024 4.024 19 N -0.920 5.920 20 Si 1.016 2.984 21 H -0.249 1.249 22 H -0.270 1.270 23 H -0.272 1.272 24 C -0.180 4.180 25 C -0.181 4.181 26 S 0.371 5.629 27 H 0.155 0.845 28 H 0.413 0.587 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.119 0.881 34 H 0.272 0.728 35 H 0.108 0.892 36 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.467 -14.106 4.112 19.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.011 4.011 3 C -0.316 4.316 4 C -0.049 4.049 5 C -0.194 4.194 6 C 0.364 3.636 7 O -0.460 6.460 8 N -0.357 5.357 9 C 0.051 3.949 10 C -0.059 4.059 11 C -0.185 4.185 12 C -0.088 4.088 13 C -0.253 4.253 14 C 0.061 3.939 15 O -0.139 6.139 16 C -0.486 4.486 17 H 0.121 0.879 18 C -0.221 4.221 19 N -0.559 5.559 20 Si 0.836 3.164 21 H -0.173 1.173 22 H -0.195 1.195 23 H -0.198 1.198 24 C -0.199 4.199 25 C -0.322 4.322 26 S 0.639 5.361 27 H 0.173 0.827 28 H 0.250 0.750 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.167 0.833 32 H 0.165 0.835 33 H 0.136 0.864 34 H 0.081 0.919 35 H 0.127 0.873 36 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -15.759 -14.217 3.248 21.471 hybrid contribution 1.837 1.241 0.548 2.283 sum -13.923 -12.975 3.796 19.407 Atomic orbital electron populations 1.81338 1.12363 1.09803 1.08976 1.24387 0.91040 0.92738 0.92975 1.19926 0.88896 1.14134 1.08658 1.20251 0.90993 0.96042 0.97577 1.18721 0.93373 1.06120 1.01223 1.17872 0.82388 0.80188 0.83170 1.90795 1.82226 1.40189 1.32769 1.45810 1.04566 1.50213 1.35128 1.20073 0.82336 0.97548 0.94980 1.19417 0.95353 0.95426 0.95688 1.21010 0.96010 0.98131 1.03370 1.21157 0.94833 0.98561 0.94232 1.21370 1.02461 0.97988 1.03513 1.19875 0.93379 0.91507 0.89131 1.83949 1.28289 1.52248 1.49399 1.21843 0.87231 1.11776 1.27717 0.87879 1.26553 1.04655 0.94997 0.95931 1.70186 1.39468 1.15948 1.30281 0.84551 0.74299 0.78959 0.78570 1.17262 1.19458 1.19753 1.20236 0.94455 1.02955 1.02298 1.26664 1.07691 0.99506 0.98333 1.83149 0.89435 1.39352 1.24174 0.82741 0.74993 0.91639 0.89146 0.83268 0.83473 0.86358 0.91943 0.87346 0.77443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -10.18 18.54 19.00 0.35 -9.83 16 2 C 0.30 5.41 15.79 88.33 1.39 6.80 16 3 C -0.20 -2.61 6.24 22.74 0.14 -2.47 16 4 C -0.01 -0.22 9.71 21.70 0.21 -0.01 16 5 C -0.18 -2.78 5.82 -21.08 -0.12 -2.90 16 6 C 0.58 12.79 7.79 86.63 0.67 13.46 16 7 O -0.58 -17.46 16.69 -4.11 -0.07 -17.53 16 8 N -0.71 -14.03 5.51 -470.21 -2.59 -16.62 16 9 C 0.17 4.13 5.80 85.63 0.50 4.62 16 10 C -0.06 -1.64 5.25 -19.88 -0.10 -1.74 16 11 C -0.17 -4.16 9.70 22.30 0.22 -3.95 16 12 C -0.07 -1.99 10.04 22.25 0.22 -1.77 16 13 C -0.23 -9.02 9.17 22.39 0.21 -8.81 16 14 C 0.11 5.04 6.65 22.58 0.15 5.19 16 15 O -0.23 -13.17 9.76 -22.74 -0.22 -13.39 16 16 C -0.41 -22.63 9.49 67.92 0.64 -21.98 16 17 H 0.10 5.18 5.20 -2.91 -0.02 5.16 16 18 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 19 N -0.92 -54.85 13.67 21.61 0.30 -54.56 16 20 Si 1.02 41.11 29.55 68.60 2.03 43.14 16 21 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 22 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 23 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 24 C -0.18 -6.78 9.64 22.39 0.22 -6.56 16 25 C -0.18 -1.60 10.40 67.43 0.70 -0.90 16 26 S 0.37 2.60 23.03 -56.49 -1.30 1.30 16 27 H 0.15 2.63 7.99 -2.91 -0.02 2.60 16 28 H 0.41 6.30 6.92 -92.71 -0.64 5.66 16 29 H 0.07 1.75 8.08 -2.39 -0.02 1.73 16 30 H 0.09 1.96 8.08 -2.39 -0.02 1.94 16 31 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 32 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 33 H 0.12 4.71 5.64 -2.91 -0.02 4.70 16 34 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 35 H 0.11 4.23 8.06 -2.91 -0.02 4.20 16 36 H 0.21 0.79 6.98 -2.91 -0.02 0.77 16 Total: -1.00 -75.54 346.42 4.53 -71.01 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.52 Total: 18.34 kcal Atomic # 6 Polarization: -27.38 SS G_CDS: 5.51 Total: -21.86 kcal Atomic # 7 Polarization: -79.06 SS G_CDS: -1.95 Total: -81.01 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.29 Total: -30.92 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -1.30 Total: 1.30 kcal Total: -75.54 4.53 -71.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361489041.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.819 kcal (2) G-P(sol) polarization free energy of solvation -75.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds