Wall clock time and date at job start Tue Mar 31 2020 15:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42101 * 110.54449 * 2 1 4 4 O 1.42100 * 110.54483 * 136.75297 * 2 1 3 5 5 C 1.76204 * 104.44740 * 248.37594 * 2 1 3 6 6 C 1.33385 * 125.20217 * 89.72448 * 5 2 1 7 7 C 1.38425 * 114.91950 * 179.85896 * 6 5 2 8 8 C 1.33386 * 114.92024 * 0.42473 * 7 6 5 9 9 C 1.50699 * 125.20049 * 179.75208 * 8 7 6 10 10 N 1.46898 * 109.47101 * 84.62452 * 9 8 7 11 11 C 1.46894 * 111.00283 * 75.70857 * 10 9 8 12 12 C 1.50695 * 109.47293 * 189.99609 * 11 10 9 13 13 H 1.08002 * 120.00376 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99967 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00133 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99845 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46884 * 60.00617 * 16 14 12 18 18 H 1.48504 * 109.46925 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47292 * 300.00012 * 16 14 12 20 20 C 1.46908 * 110.99966 * 199.66773 * 10 9 8 21 21 C 1.52997 * 109.47311 * 75.80259 * 20 10 9 22 22 C 1.47193 * 109.47312 * 174.87025 * 21 20 10 23 23 N 9.11502 * 149.95875 * 183.31714 * 5 1 2 24 24 S 1.75879 * 125.20166 * 270.02183 * 5 2 1 25 25 H 1.09000 * 109.47255 * 51.62402 * 1 2 3 26 26 H 1.09005 * 109.47143 * 171.62703 * 1 2 3 27 27 H 1.09003 * 109.47051 * 291.62425 * 1 2 3 28 28 H 1.08005 * 122.54075 * 0.02562 * 6 5 2 29 29 H 1.08001 * 122.53478 * 180.19972 * 7 6 5 30 30 H 1.09003 * 109.47145 * 204.62319 * 9 8 7 31 31 H 1.09003 * 109.47367 * 324.62081 * 9 8 7 32 32 H 1.08998 * 109.47572 * 310.00554 * 11 10 9 33 33 H 1.09008 * 109.46710 * 70.00460 * 11 10 9 34 34 H 0.97007 * 120.00080 * 180.02562 * 15 14 12 35 35 H 1.08998 * 109.46705 * 195.80775 * 20 10 9 36 36 H 1.09003 * 109.46659 * 315.80485 * 20 10 9 37 37 H 1.09001 * 109.47377 * 294.87519 * 21 20 10 38 38 H 1.09004 * 109.46924 * 54.87087 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9692 0.9117 5 6 2.2536 -0.6288 -1.5862 6 6 2.4404 0.1095 -2.6813 7 6 2.7843 -0.6058 -3.8154 8 6 2.8682 -1.9259 -3.6433 9 6 3.2190 -2.9215 -4.7187 10 7 4.6799 -3.0220 -4.8352 11 6 5.2440 -3.8033 -3.7265 12 6 6.7460 -3.6809 -3.7389 13 1 7.2329 -3.0823 -4.4945 14 6 7.4986 -4.3324 -2.7848 15 7 6.9058 -5.0610 -1.8644 16 14 9.3603 -4.1801 -2.7997 17 1 9.7415 -2.7533 -2.6445 18 1 9.9306 -4.9701 -1.6789 19 1 9.8890 -4.6965 -4.0878 20 6 5.0666 -3.5934 -6.1322 21 6 4.9040 -2.5348 -7.2248 22 6 5.4065 -3.0666 -8.5020 23 7 5.7944 -3.4770 -9.4877 24 16 2.5060 -2.3267 -1.9695 25 1 -0.3634 0.6380 -0.8056 26 1 -0.3634 -1.0168 -0.1497 27 1 -0.3633 0.3787 0.9554 28 1 2.3340 1.1843 -2.6824 29 1 2.9672 -0.1313 -4.7682 30 1 2.8073 -3.8969 -4.4592 31 1 2.8005 -2.5919 -5.6697 32 1 4.8563 -3.4245 -2.7809 33 1 4.9639 -4.8505 -3.8407 34 1 7.4353 -5.5191 -1.1929 35 1 6.1068 -3.9165 -6.0912 36 1 4.4291 -4.4485 -6.3570 37 1 3.8497 -2.2779 -7.3278 38 1 5.4702 -1.6435 -6.9543 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363581731.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:55 Heat of formation + Delta-G solvation = -1.878658 kcal Electronic energy + Delta-G solvation = -22826.211993 eV Core-core repulsion = 19309.400869 eV Total energy + Delta-G solvation = -3516.811124 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.34543 -37.26835 -36.94775 -36.09675 -35.93434 -32.78195 -31.75493 -30.13353 -29.65273 -27.28305 -25.54701 -23.33167 -22.97366 -20.64828 -20.05255 -18.53241 -17.69136 -17.37465 -16.53749 -16.26346 -16.07112 -15.50426 -15.12150 -14.95620 -14.68032 -14.39671 -13.75969 -13.60650 -13.41957 -13.38562 -13.03135 -12.76402 -12.55816 -12.33753 -12.16594 -12.09281 -12.02584 -11.92442 -11.84843 -11.60159 -11.25084 -11.07763 -10.96742 -10.81196 -10.67643 -10.55147 -10.40185 -9.98719 -9.36891 -8.88923 -8.53310 -8.24834 -7.62156 -6.09430 -4.11882 -0.01084 0.70937 1.63499 2.02107 2.65047 2.87885 2.89540 2.93510 3.31448 3.36576 3.38688 3.85210 4.08646 4.13198 4.38706 4.56041 4.78449 4.84469 4.96943 5.20261 5.27708 5.30495 5.38877 5.43092 5.49355 5.54430 5.61217 5.74753 6.00145 6.10460 6.26940 6.40394 6.50304 7.01606 7.10306 7.62242 7.71125 7.82312 7.99102 8.33136 8.93480 9.52969 11.01144 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.010566 B = 0.004104 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.350182 B = 6821.712245 C = 8743.254455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.528 3.472 3 O -0.936 6.936 4 O -0.931 6.931 5 C -0.797 4.797 6 C 0.007 3.993 7 C -0.162 4.162 8 C -0.105 4.105 9 C 0.107 3.893 10 N -0.528 5.528 11 C 0.187 3.813 12 C -0.515 4.515 13 H 0.065 0.935 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.896 3.104 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.065 3.935 21 C -0.027 4.027 22 C 0.217 3.783 23 N -0.454 5.454 24 S 0.233 5.767 25 H 0.131 0.869 26 H 0.132 0.868 27 H 0.129 0.871 28 H 0.149 0.851 29 H 0.147 0.853 30 H 0.045 0.955 31 H 0.089 0.911 32 H 0.041 0.959 33 H -0.005 1.005 34 H 0.264 0.736 35 H 0.101 0.899 36 H 0.034 0.966 37 H 0.099 0.901 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.953 9.365 -0.654 19.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.704 3.296 3 O -0.934 6.934 4 O -0.928 6.928 5 C -0.999 4.999 6 C -0.030 4.030 7 C -0.192 4.192 8 C -0.226 4.226 9 C -0.023 4.023 10 N -0.253 5.253 11 C 0.063 3.937 12 C -0.554 4.554 13 H 0.083 0.917 14 C -0.142 4.142 15 N -0.531 5.531 16 Si 0.724 3.276 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.065 4.065 21 C -0.068 4.068 22 C -0.100 4.100 23 N -0.131 5.131 24 S 0.501 5.499 25 H 0.150 0.850 26 H 0.150 0.850 27 H 0.148 0.852 28 H 0.166 0.834 29 H 0.164 0.836 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.059 0.941 33 H 0.013 0.987 34 H 0.074 0.926 35 H 0.119 0.881 36 H 0.052 0.948 37 H 0.117 0.883 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.648 7.949 -0.441 17.557 hybrid contribution 0.266 0.442 -1.019 1.142 sum -15.382 8.392 -1.461 17.583 Atomic orbital electron populations 1.30255 1.26238 1.12046 1.11549 1.04442 0.77486 0.74501 0.73142 1.93570 1.77391 1.36517 1.85890 1.93620 1.77115 1.61550 1.60562 1.35261 1.30624 1.08444 1.25590 1.19880 0.92347 1.00639 0.90093 1.20161 1.06081 0.92557 1.00426 1.25098 1.00685 0.98740 0.98113 1.20744 0.91794 0.94909 0.94872 1.62073 1.05273 1.54539 1.03365 1.19921 0.95575 0.90289 0.87940 1.21017 0.90488 1.30052 1.13804 0.91718 1.24953 0.98836 0.95137 0.95298 1.69923 1.35852 1.31381 1.15967 0.86591 0.85197 0.78323 0.77522 1.20051 1.21276 1.20288 1.21919 1.03787 0.93102 0.87647 1.19417 1.02090 1.00777 0.84471 1.29324 0.93005 0.93137 0.94564 1.81182 1.09764 1.09405 1.12746 1.84481 1.63269 0.99929 1.02211 0.85017 0.84971 0.85199 0.83372 0.83563 0.93670 0.89317 0.94107 0.98743 0.92644 0.88112 0.94772 0.88268 0.86438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.84 10.80 101.05 1.09 -2.75 16 2 S 2.53 28.91 5.94 -107.50 -0.64 28.27 16 3 O -0.94 -13.15 17.64 -57.54 -1.02 -14.17 16 4 O -0.93 -14.48 17.77 -57.54 -1.02 -15.50 16 5 C -0.80 -10.45 6.22 29.04 0.18 -10.27 16 6 C 0.01 0.08 9.78 -41.21 -0.40 -0.32 16 7 C -0.16 -2.01 10.05 -41.21 -0.41 -2.43 16 8 C -0.11 -1.50 5.46 -36.00 -0.20 -1.70 16 9 C 0.11 1.47 5.31 -4.98 -0.03 1.45 16 10 N -0.53 -9.16 4.35 -237.52 -1.03 -10.19 16 11 C 0.19 4.33 4.55 -4.98 -0.02 4.31 16 12 C -0.52 -13.39 8.23 -34.44 -0.28 -13.67 16 13 H 0.06 1.64 7.31 -52.49 -0.38 1.26 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 16 Si 0.90 21.19 29.54 -169.99 -5.02 16.16 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 C 0.07 0.98 4.75 -3.82 -0.02 0.96 16 21 C -0.03 -0.30 5.75 -29.52 -0.17 -0.47 16 22 C 0.22 2.93 15.43 -20.76 -0.32 2.61 16 23 N -0.45 -7.34 18.54 42.16 0.78 -6.56 16 24 S 0.23 3.55 22.07 -107.50 -2.37 1.18 16 25 H 0.13 0.53 8.14 -51.92 -0.42 0.10 16 26 H 0.13 0.63 8.14 -51.92 -0.42 0.21 16 27 H 0.13 0.54 8.14 -51.92 -0.42 0.12 16 28 H 0.15 1.41 8.02 -52.48 -0.42 0.98 16 29 H 0.15 1.46 8.06 -52.49 -0.42 1.03 16 30 H 0.05 0.64 8.00 -51.93 -0.42 0.22 16 31 H 0.09 0.90 6.56 -51.93 -0.34 0.56 16 32 H 0.04 1.02 6.46 -51.93 -0.34 0.68 16 33 H -0.01 -0.13 8.12 -51.92 -0.42 -0.55 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.10 1.81 6.57 -51.93 -0.34 1.46 16 36 H 0.03 0.49 8.00 -51.93 -0.42 0.07 16 37 H 0.10 0.80 6.90 -51.93 -0.36 0.45 16 38 H 0.12 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 357.11 15.07 5.38 5.38 Total: -1.00 -35.64 357.11 -9.56 -45.20 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: -4.68 Total: -4.17 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -0.68 Total: -20.74 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.49 Total: -41.60 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -2.04 Total: -29.67 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 32.45 SS G_CDS: -3.01 Total: 29.44 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.64 -9.56 -45.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363581731.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.322 kcal (2) G-P(sol) polarization free energy of solvation -35.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds