Wall clock time and date at job start Tue Mar 31 2020 15:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42101 * 110.54449 * 2 1 4 4 O 1.42100 * 110.54483 * 136.75297 * 2 1 3 5 5 C 1.76204 * 104.44740 * 248.37594 * 2 1 3 6 6 C 1.33385 * 125.20217 * 89.72448 * 5 2 1 7 7 C 1.38425 * 114.91950 * 179.85896 * 6 5 2 8 8 C 1.33386 * 114.92024 * 0.42473 * 7 6 5 9 9 C 1.50699 * 125.20049 * 179.75208 * 8 7 6 10 10 N 1.46898 * 109.47101 * 84.62452 * 9 8 7 11 11 C 1.46894 * 111.00283 * 75.70857 * 10 9 8 12 12 C 1.50695 * 109.47293 * 189.99609 * 11 10 9 13 13 H 1.08002 * 120.00376 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99967 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00133 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99845 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46884 * 60.00617 * 16 14 12 18 18 H 1.48504 * 109.46925 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47292 * 300.00012 * 16 14 12 20 20 C 1.46908 * 110.99966 * 199.66773 * 10 9 8 21 21 C 1.52997 * 109.47311 * 75.80259 * 20 10 9 22 22 C 1.47193 * 109.47312 * 174.87025 * 21 20 10 23 23 N 9.11502 * 149.95875 * 183.31714 * 5 1 2 24 24 S 1.75879 * 125.20166 * 270.02183 * 5 2 1 25 25 H 1.09000 * 109.47255 * 51.62402 * 1 2 3 26 26 H 1.09005 * 109.47143 * 171.62703 * 1 2 3 27 27 H 1.09003 * 109.47051 * 291.62425 * 1 2 3 28 28 H 1.08005 * 122.54075 * 0.02562 * 6 5 2 29 29 H 1.08001 * 122.53478 * 180.19972 * 7 6 5 30 30 H 1.09003 * 109.47145 * 204.62319 * 9 8 7 31 31 H 1.09003 * 109.47367 * 324.62081 * 9 8 7 32 32 H 1.08998 * 109.47572 * 310.00554 * 11 10 9 33 33 H 1.09008 * 109.46710 * 70.00460 * 11 10 9 34 34 H 0.97007 * 120.00080 * 180.02562 * 15 14 12 35 35 H 1.08998 * 109.46705 * 195.80775 * 20 10 9 36 36 H 1.09003 * 109.46659 * 315.80485 * 20 10 9 37 37 H 1.09001 * 109.47377 * 294.87519 * 21 20 10 38 38 H 1.09004 * 109.46924 * 54.87087 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9692 0.9117 5 6 2.2536 -0.6288 -1.5862 6 6 2.4404 0.1095 -2.6813 7 6 2.7843 -0.6058 -3.8154 8 6 2.8682 -1.9259 -3.6433 9 6 3.2190 -2.9215 -4.7187 10 7 4.6799 -3.0220 -4.8352 11 6 5.2440 -3.8033 -3.7265 12 6 6.7460 -3.6809 -3.7389 13 1 7.2329 -3.0823 -4.4945 14 6 7.4986 -4.3324 -2.7848 15 7 6.9058 -5.0610 -1.8644 16 14 9.3603 -4.1801 -2.7997 17 1 9.7415 -2.7533 -2.6445 18 1 9.9306 -4.9701 -1.6789 19 1 9.8890 -4.6965 -4.0878 20 6 5.0666 -3.5934 -6.1322 21 6 4.9040 -2.5348 -7.2248 22 6 5.4065 -3.0666 -8.5020 23 7 5.7944 -3.4770 -9.4877 24 16 2.5060 -2.3267 -1.9695 25 1 -0.3634 0.6380 -0.8056 26 1 -0.3634 -1.0168 -0.1497 27 1 -0.3633 0.3787 0.9554 28 1 2.3340 1.1843 -2.6824 29 1 2.9672 -0.1313 -4.7682 30 1 2.8073 -3.8969 -4.4592 31 1 2.8005 -2.5919 -5.6697 32 1 4.8563 -3.4245 -2.7809 33 1 4.9639 -4.8505 -3.8407 34 1 7.4353 -5.5191 -1.1929 35 1 6.1068 -3.9165 -6.0912 36 1 4.4291 -4.4485 -6.3570 37 1 3.8497 -2.2779 -7.3278 38 1 5.4702 -1.6435 -6.9543 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363581731.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:54 Heat of formation + Delta-G solvation = -28.827797 kcal Electronic energy + Delta-G solvation = -22827.380596 eV Core-core repulsion = 19309.400869 eV Total energy + Delta-G solvation = -3517.979727 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.50034 -38.36553 -37.96998 -37.31220 -36.94422 -34.75131 -32.82870 -31.40986 -30.27302 -28.83326 -26.78750 -24.86884 -24.19036 -21.95343 -21.09357 -19.49598 -18.78709 -18.57592 -18.26851 -17.16521 -17.08958 -16.59616 -16.49905 -16.28210 -16.09897 -15.42383 -15.18138 -14.73373 -14.28352 -14.04886 -13.94194 -13.91803 -13.77380 -13.69051 -13.49592 -13.30650 -13.12636 -13.06449 -13.01720 -12.84636 -12.68512 -12.63357 -12.26083 -12.21878 -11.88331 -11.80029 -11.60309 -11.52450 -11.24742 -10.58159 -9.93197 -9.39459 -9.07607 -8.17422 -6.24905 -0.82438 -0.31014 0.58688 1.00499 1.41302 1.43134 1.49919 1.68528 1.80999 1.88519 1.98937 2.41112 2.99482 3.04737 3.17459 3.37570 3.62724 3.84758 4.14266 4.16860 4.25943 4.27801 4.42522 4.52450 4.59956 4.64913 4.78415 4.97272 5.02140 5.04667 5.09951 5.25374 5.33565 5.36827 5.57355 5.68058 6.08351 6.27130 6.56232 6.67805 6.91065 7.43909 8.93011 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.010566 B = 0.004104 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.350182 B = 6821.712245 C = 8743.254455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.614 4.614 2 S 2.520 3.480 3 O -0.970 6.970 4 O -0.987 6.987 5 C -0.791 4.791 6 C 0.006 3.994 7 C -0.149 4.149 8 C -0.120 4.120 9 C 0.107 3.893 10 N -0.527 5.527 11 C 0.201 3.799 12 C -0.518 4.518 13 H 0.069 0.931 14 C 0.005 3.995 15 N -0.931 5.931 16 Si 0.955 3.045 17 H -0.270 1.270 18 H -0.289 1.289 19 H -0.268 1.268 20 C 0.064 3.936 21 C -0.010 4.010 22 C 0.242 3.758 23 N -0.504 5.504 24 S 0.147 5.853 25 H 0.164 0.836 26 H 0.149 0.851 27 H 0.157 0.843 28 H 0.179 0.821 29 H 0.182 0.818 30 H 0.036 0.964 31 H 0.139 0.861 32 H 0.020 0.980 33 H -0.036 1.036 34 H 0.262 0.738 35 H 0.065 0.935 36 H 0.041 0.959 37 H 0.145 0.855 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.843 11.983 -2.338 22.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.769 4.769 2 S 2.701 3.299 3 O -0.967 6.967 4 O -0.984 6.984 5 C -0.992 4.992 6 C -0.030 4.030 7 C -0.180 4.180 8 C -0.240 4.240 9 C -0.023 4.023 10 N -0.251 5.251 11 C 0.074 3.926 12 C -0.557 4.557 13 H 0.087 0.913 14 C -0.194 4.194 15 N -0.572 5.572 16 Si 0.780 3.220 17 H -0.195 1.195 18 H -0.215 1.215 19 H -0.194 1.194 20 C -0.065 4.065 21 C -0.050 4.050 22 C -0.075 4.075 23 N -0.182 5.182 24 S 0.414 5.586 25 H 0.182 0.818 26 H 0.168 0.832 27 H 0.175 0.825 28 H 0.196 0.804 29 H 0.199 0.801 30 H 0.054 0.946 31 H 0.156 0.844 32 H 0.038 0.962 33 H -0.019 1.019 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.163 0.837 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -17.485 10.577 -2.166 20.550 hybrid contribution 0.704 -0.290 -0.489 0.905 sum -16.781 10.287 -2.655 19.861 Atomic orbital electron populations 1.29981 1.18092 1.14312 1.14497 1.04529 0.80508 0.72896 0.71940 1.93522 1.80100 1.37186 1.85906 1.93556 1.80226 1.62656 1.61965 1.35441 1.30678 1.06521 1.26564 1.20352 0.90987 1.02081 0.89538 1.20596 1.03827 0.91715 1.01852 1.25148 1.02482 0.99646 0.96737 1.20914 0.89247 0.94905 0.97190 1.61915 1.07781 1.52964 1.02432 1.19518 0.94385 0.89164 0.89511 1.21460 0.92297 1.28866 1.13049 0.91313 1.25774 1.03077 0.95228 0.95302 1.70059 1.37254 1.32908 1.16975 0.85655 0.80376 0.78311 0.77622 1.19538 1.21465 1.19353 1.21863 1.01853 0.94952 0.87847 1.19429 1.05003 0.99199 0.81410 1.29654 0.91582 0.91842 0.94382 1.81217 1.11581 1.10819 1.14619 1.84797 1.65547 1.03067 1.05172 0.81811 0.83237 0.82478 0.80358 0.80059 0.94568 0.84358 0.96194 1.01856 0.92968 0.91618 0.94052 0.83725 0.85037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.61 -4.93 10.80 113.37 1.22 -3.71 16 2 S 2.52 56.03 5.94 -56.49 -0.34 55.69 16 3 O -0.97 -26.54 17.64 -127.65 -2.25 -28.79 16 4 O -0.99 -32.11 17.77 -127.65 -2.27 -34.38 16 5 C -0.79 -20.12 6.22 66.72 0.42 -19.71 16 6 C 0.01 0.12 9.78 21.22 0.21 0.33 16 7 C -0.15 -3.21 10.05 21.22 0.21 -3.00 16 8 C -0.12 -3.24 5.46 24.59 0.13 -3.11 16 9 C 0.11 2.73 5.31 85.56 0.45 3.18 16 10 N -0.53 -17.69 4.35 -905.37 -3.93 -21.62 16 11 C 0.20 9.57 4.55 85.56 0.39 9.95 16 12 C -0.52 -27.48 8.23 25.60 0.21 -27.27 16 13 H 0.07 3.50 7.31 -2.91 -0.02 3.48 16 14 C 0.00 0.25 5.46 84.66 0.46 0.72 16 15 N -0.93 -55.59 13.29 21.45 0.28 -55.31 16 16 Si 0.95 44.20 29.54 68.60 2.03 46.23 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 C 0.06 1.83 4.75 86.30 0.41 2.24 16 21 C -0.01 -0.19 5.75 28.79 0.17 -0.02 16 22 C 0.24 5.92 15.43 89.44 1.38 7.30 16 23 N -0.50 -15.64 18.54 20.00 0.37 -15.27 16 24 S 0.15 4.62 22.07 -56.49 -1.25 3.37 16 25 H 0.16 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.15 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.16 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.18 2.70 8.02 -2.91 -0.02 2.68 16 29 H 0.18 2.58 8.06 -2.91 -0.02 2.56 16 30 H 0.04 1.01 8.00 -2.39 -0.02 0.99 16 31 H 0.14 2.12 6.56 -2.39 -0.02 2.10 16 32 H 0.02 1.05 6.46 -2.39 -0.02 1.03 16 33 H -0.04 -1.91 8.12 -2.38 -0.02 -1.93 16 34 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 35 H 0.07 2.34 6.57 -2.39 -0.02 2.33 16 36 H 0.04 1.11 8.00 -2.39 -0.02 1.10 16 37 H 0.15 1.42 6.90 -2.39 -0.02 1.41 16 38 H 0.13 2.19 8.14 -2.38 -0.02 2.18 16 Total: -1.00 -83.96 357.11 -0.61 -84.56 By element: Atomic # 1 Polarization: -2.48 SS G_CDS: 1.08 Total: -1.40 kcal Atomic # 6 Polarization: -38.75 SS G_CDS: 5.67 Total: -33.09 kcal Atomic # 7 Polarization: -88.92 SS G_CDS: -3.28 Total: -92.19 kcal Atomic # 8 Polarization: -58.65 SS G_CDS: -4.52 Total: -63.17 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: 60.65 SS G_CDS: -1.58 Total: 59.06 kcal Total: -83.96 -0.61 -84.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363581731.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.736 kcal (2) G-P(sol) polarization free energy of solvation -83.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds