Wall clock time and date at job start Tue Mar 31 2020 15:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 119.99946 * 2 1 4 4 H 1.48498 * 109.47312 * 270.00434 * 3 2 1 5 5 H 1.48510 * 109.46967 * 29.99855 * 3 2 1 6 6 H 1.48495 * 109.47371 * 149.99929 * 3 2 1 7 7 C 1.37880 * 120.00471 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00092 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99452 * 0.27043 * 7 2 1 10 10 O 1.42900 * 110.88548 * 59.02854 * 9 7 2 11 11 C 1.55157 * 111.00044 * 182.90278 * 9 7 2 12 12 C 1.54321 * 102.94142 * 153.57868 * 11 9 7 13 13 N 1.47025 * 107.27306 * 337.80866 * 12 11 9 14 14 C 1.34774 * 125.65424 * 178.99193 * 13 12 11 15 15 O 1.21586 * 120.00515 * 179.97438 * 14 13 12 16 16 N 1.34780 * 119.99754 * 359.97438 * 14 13 12 17 17 C 1.39994 * 119.99883 * 175.50955 * 16 14 13 18 18 C 1.38811 * 120.06552 * 34.70032 * 17 16 14 19 19 C 1.38324 * 119.92345 * 179.97438 * 18 17 16 20 20 F 1.35098 * 119.98137 * 179.97438 * 19 18 17 21 21 C 1.38511 * 120.04152 * 359.97438 * 19 18 17 22 22 C 1.38240 * 120.11808 * 359.97438 * 21 19 18 23 23 C 1.38226 * 120.08413 * 359.79164 * 22 21 19 24 24 Cl 1.73600 * 120.02343 * 180.23042 * 23 22 21 25 25 C 1.47476 * 108.72110 * 358.97489 * 13 12 11 26 26 H 0.96998 * 120.00703 * 0.02562 * 1 2 3 27 27 H 0.96698 * 113.99953 * 300.70350 * 10 9 7 28 28 H 1.08996 * 110.72512 * 271.94469 * 11 9 7 29 29 H 1.09008 * 110.71808 * 35.21943 * 11 9 7 30 30 H 1.08999 * 109.88402 * 97.22300 * 12 11 9 31 31 H 1.08998 * 109.88542 * 218.39548 * 12 11 9 32 32 H 0.97004 * 119.99855 * 355.51369 * 16 14 13 33 33 H 1.07998 * 120.03505 * 359.94993 * 18 17 16 34 34 H 1.08001 * 119.94559 * 180.02562 * 21 19 18 35 35 H 1.08000 * 119.95435 * 180.02562 * 22 21 19 36 36 H 1.08988 * 110.34635 * 265.25210 * 25 13 12 37 37 H 1.08997 * 110.40818 * 142.90994 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2510 -2.4991 -0.0073 10 8 0.4060 -2.5935 -1.1558 11 6 2.2255 -3.7042 0.0667 12 6 1.3644 -4.8054 0.7203 13 7 0.2769 -4.1349 1.4479 14 6 -0.7033 -4.7509 2.1381 15 8 -1.5544 -4.0926 2.7042 16 7 -0.7399 -6.0967 2.2007 17 6 -1.7012 -6.7346 2.9937 18 6 -2.9692 -6.1855 3.1260 19 6 -3.9169 -6.8185 3.9099 20 9 -5.1512 -6.2849 4.0399 21 6 -3.6013 -7.9992 4.5616 22 6 -2.3394 -8.5482 4.4302 23 6 -1.3900 -7.9224 3.6443 24 17 0.1924 -8.6163 3.4756 25 6 0.4359 -2.6764 1.2980 26 1 -0.4851 0.8400 -0.0004 27 1 -0.2526 -1.8883 -1.2185 28 1 2.5435 -4.0050 -0.9315 29 1 3.0865 -3.4662 0.6915 30 1 0.9493 -5.4569 -0.0487 31 1 1.9709 -5.3873 1.4143 32 1 -0.1002 -6.6233 1.6963 33 1 -3.2153 -5.2649 2.6178 34 1 -4.3426 -8.4924 5.1730 35 1 -2.0962 -9.4691 4.9393 36 1 0.9837 -2.2658 2.1460 37 1 -0.5378 -2.1955 1.2053 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364255708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:37 Heat of formation + Delta-G solvation = -95.118908 kcal Electronic energy + Delta-G solvation = -25576.358066 eV Core-core repulsion = 21487.246858 eV Total energy + Delta-G solvation = -4089.111208 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.99934 -40.60579 -38.95830 -37.44029 -36.60773 -34.65525 -34.35594 -32.24491 -30.88999 -30.35109 -29.27276 -27.85321 -25.27986 -23.64082 -22.89464 -22.26229 -19.84334 -19.74871 -18.56373 -17.54426 -17.17336 -16.84736 -16.50743 -15.90537 -15.71783 -15.37876 -15.09830 -14.67293 -14.39778 -14.11333 -13.80657 -13.55617 -13.26253 -13.11461 -12.90878 -12.72466 -12.24852 -11.90976 -11.71936 -11.66107 -11.45925 -11.17779 -11.08421 -10.90065 -10.70233 -10.52605 -10.47959 -10.24856 -9.80683 -9.46530 -8.89461 -8.74887 -8.49209 -8.36471 -7.85205 -6.33786 -4.43642 0.76399 0.96753 1.86036 2.68024 3.13920 3.18157 3.26108 3.28090 3.54099 3.98355 4.18803 4.24819 4.48294 4.75895 4.92649 4.98809 5.14096 5.28248 5.52929 5.56801 5.62526 5.72792 5.81870 5.90939 5.96596 6.04689 6.30035 6.40791 6.60153 6.71866 6.74925 6.77175 7.06313 7.21720 7.36339 7.68765 7.94375 8.19734 8.59902 8.76138 9.25350 9.35076 10.73520 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.018857 B = 0.003264 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.523639 B = 8576.406474 C = 9620.370294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.072 3.928 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.249 3.751 10 O -0.583 6.583 11 C -0.115 4.115 12 C 0.099 3.901 13 N -0.618 5.618 14 C 0.715 3.285 15 O -0.575 6.575 16 N -0.685 5.685 17 C 0.222 3.778 18 C -0.150 4.150 19 C 0.127 3.873 20 F -0.132 7.132 21 C -0.169 4.169 22 C -0.061 4.061 23 C -0.087 4.087 24 Cl -0.062 7.062 25 C 0.111 3.889 26 H 0.271 0.729 27 H 0.384 0.616 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.410 0.590 33 H 0.166 0.834 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.062 0.938 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.432 -17.053 6.335 18.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.578 4.578 8 H 0.086 0.914 9 C 0.208 3.792 10 O -0.392 6.392 11 C -0.153 4.153 12 C -0.024 4.024 13 N -0.353 5.353 14 C 0.418 3.582 15 O -0.453 6.453 16 N -0.333 5.333 17 C 0.123 3.877 18 C -0.172 4.172 19 C 0.107 3.893 20 F -0.111 7.111 21 C -0.189 4.189 22 C -0.080 4.080 23 C -0.117 4.117 24 Cl -0.033 7.033 25 C -0.010 4.010 26 H 0.082 0.918 27 H 0.235 0.765 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.247 0.753 33 H 0.183 0.817 34 H 0.161 0.839 35 H 0.163 0.837 36 H 0.080 0.920 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.709 -16.937 6.607 18.381 hybrid contribution 0.374 1.148 -0.065 1.209 sum -2.336 -15.788 6.542 17.249 Atomic orbital electron populations 1.69635 1.06023 1.28090 1.49424 1.25080 0.95044 0.99831 0.93211 0.86387 0.79773 0.82333 0.78330 1.20361 1.20962 1.19667 1.21464 0.93702 0.89957 1.52629 0.91406 1.19619 0.86168 0.91715 0.81656 1.86083 1.51485 1.55171 1.46506 1.22600 0.97676 0.94726 1.00302 1.22052 0.88943 0.96566 0.94837 1.48004 1.25922 1.09998 1.51361 1.15464 0.82191 0.80419 0.80159 1.90903 1.39858 1.63875 1.50660 1.42789 1.34994 1.06312 1.49217 1.16899 0.88120 0.90721 0.91988 1.21356 0.90467 1.03164 1.02182 1.17531 0.80512 0.93080 0.98218 1.91525 1.39467 1.85794 1.94290 1.20997 0.97940 0.96300 1.03709 1.20628 0.91148 0.99723 0.96546 1.20725 0.88757 0.97839 1.04341 1.98365 1.24321 1.83736 1.96857 1.23303 1.02823 0.74649 1.00264 0.91845 0.76465 0.90520 0.90235 0.92305 0.92668 0.75297 0.81680 0.83901 0.83710 0.92000 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.25 10.69 55.43 0.59 -22.65 16 2 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 3 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.54 -13.56 8.25 -34.44 -0.28 -13.84 16 8 H 0.07 1.67 7.78 -52.49 -0.41 1.26 16 9 C 0.25 5.78 0.88 -89.62 -0.08 5.70 16 10 O -0.58 -14.36 13.17 -35.23 -0.46 -14.83 16 11 C -0.12 -2.15 6.13 -24.90 -0.15 -2.31 16 12 C 0.10 1.63 6.16 -3.06 -0.02 1.61 16 13 N -0.62 -12.15 3.33 -176.20 -0.59 -12.74 16 14 C 0.72 13.85 8.33 -86.92 -0.72 13.12 16 15 O -0.58 -12.96 14.01 5.29 0.07 -12.89 16 16 N -0.69 -10.38 5.01 -14.20 -0.07 -10.45 16 17 C 0.22 3.14 6.30 -83.65 -0.53 2.62 16 18 C -0.15 -2.25 8.68 -39.34 -0.34 -2.59 16 19 C 0.13 1.63 7.30 -39.45 -0.29 1.34 16 20 F -0.13 -1.78 17.27 2.25 0.04 -1.74 16 21 C -0.17 -1.67 10.02 -39.48 -0.40 -2.07 16 22 C -0.06 -0.58 9.82 -39.59 -0.39 -0.97 16 23 C -0.09 -1.00 6.34 -39.32 -0.25 -1.25 16 24 Cl -0.06 -0.64 27.94 -51.86 -1.45 -2.09 16 25 C 0.11 2.56 5.51 -2.50 -0.01 2.55 16 26 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 27 H 0.38 9.83 7.24 45.56 0.33 10.16 16 28 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 29 H 0.08 1.40 8.03 -51.92 -0.42 0.98 16 30 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.41 5.29 7.04 -40.82 -0.29 5.01 16 33 H 0.17 2.89 6.19 -52.49 -0.33 2.56 16 34 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 36 H 0.06 1.48 8.03 -51.94 -0.42 1.06 16 37 H 0.09 2.25 7.48 -51.93 -0.39 1.87 16 LS Contribution 331.92 15.07 5.00 5.00 Total: -1.00 -28.13 331.92 -8.60 -36.73 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -3.16 Total: 15.14 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -3.56 Total: 5.65 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: -0.06 Total: -45.85 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.39 Total: -27.72 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.45 Total: -2.09 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.13 -8.60 -36.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364255708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.390 kcal (2) G-P(sol) polarization free energy of solvation -28.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds