Wall clock time and date at job start Tue Mar 31 2020 15:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 119.99946 * 2 1 4 4 H 1.48498 * 109.47312 * 270.00434 * 3 2 1 5 5 H 1.48510 * 109.46967 * 29.99855 * 3 2 1 6 6 H 1.48495 * 109.47371 * 149.99929 * 3 2 1 7 7 C 1.37880 * 120.00471 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00092 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99452 * 0.27043 * 7 2 1 10 10 O 1.42900 * 110.88548 * 59.02854 * 9 7 2 11 11 C 1.55157 * 111.00044 * 182.90278 * 9 7 2 12 12 C 1.54321 * 102.94142 * 153.57868 * 11 9 7 13 13 N 1.47025 * 107.27306 * 337.80866 * 12 11 9 14 14 C 1.34774 * 125.65424 * 178.99193 * 13 12 11 15 15 O 1.21586 * 120.00515 * 179.97438 * 14 13 12 16 16 N 1.34780 * 119.99754 * 359.97438 * 14 13 12 17 17 C 1.39994 * 119.99883 * 175.50955 * 16 14 13 18 18 C 1.38811 * 120.06552 * 34.70032 * 17 16 14 19 19 C 1.38324 * 119.92345 * 179.97438 * 18 17 16 20 20 F 1.35098 * 119.98137 * 179.97438 * 19 18 17 21 21 C 1.38511 * 120.04152 * 359.97438 * 19 18 17 22 22 C 1.38240 * 120.11808 * 359.97438 * 21 19 18 23 23 C 1.38226 * 120.08413 * 359.79164 * 22 21 19 24 24 Cl 1.73600 * 120.02343 * 180.23042 * 23 22 21 25 25 C 1.47476 * 108.72110 * 358.97489 * 13 12 11 26 26 H 0.96998 * 120.00703 * 0.02562 * 1 2 3 27 27 H 0.96698 * 113.99953 * 300.70350 * 10 9 7 28 28 H 1.08996 * 110.72512 * 271.94469 * 11 9 7 29 29 H 1.09008 * 110.71808 * 35.21943 * 11 9 7 30 30 H 1.08999 * 109.88402 * 97.22300 * 12 11 9 31 31 H 1.08998 * 109.88542 * 218.39548 * 12 11 9 32 32 H 0.97004 * 119.99855 * 355.51369 * 16 14 13 33 33 H 1.07998 * 120.03505 * 359.94993 * 18 17 16 34 34 H 1.08001 * 119.94559 * 180.02562 * 21 19 18 35 35 H 1.08000 * 119.95435 * 180.02562 * 22 21 19 36 36 H 1.08988 * 110.34635 * 265.25210 * 25 13 12 37 37 H 1.08997 * 110.40818 * 142.90994 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2510 -2.4991 -0.0073 10 8 0.4060 -2.5935 -1.1558 11 6 2.2255 -3.7042 0.0667 12 6 1.3644 -4.8054 0.7203 13 7 0.2769 -4.1349 1.4479 14 6 -0.7033 -4.7509 2.1381 15 8 -1.5544 -4.0926 2.7042 16 7 -0.7399 -6.0967 2.2007 17 6 -1.7012 -6.7346 2.9937 18 6 -2.9692 -6.1855 3.1260 19 6 -3.9169 -6.8185 3.9099 20 9 -5.1512 -6.2849 4.0399 21 6 -3.6013 -7.9992 4.5616 22 6 -2.3394 -8.5482 4.4302 23 6 -1.3900 -7.9224 3.6443 24 17 0.1924 -8.6163 3.4756 25 6 0.4359 -2.6764 1.2980 26 1 -0.4851 0.8400 -0.0004 27 1 -0.2526 -1.8883 -1.2185 28 1 2.5435 -4.0050 -0.9315 29 1 3.0865 -3.4662 0.6915 30 1 0.9493 -5.4569 -0.0487 31 1 1.9709 -5.3873 1.4143 32 1 -0.1002 -6.6233 1.6963 33 1 -3.2153 -5.2649 2.6178 34 1 -4.3426 -8.4924 5.1730 35 1 -2.0962 -9.4691 4.9393 36 1 0.9837 -2.2658 2.1460 37 1 -0.5378 -2.1955 1.2053 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364255708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:36 Heat of formation + Delta-G solvation = -113.547740 kcal Electronic energy + Delta-G solvation = -25577.157200 eV Core-core repulsion = 21487.246858 eV Total energy + Delta-G solvation = -4089.910342 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.01968 -41.93816 -40.22196 -38.96984 -37.48855 -36.18867 -35.85786 -34.20113 -32.21733 -31.49356 -30.46644 -29.52730 -27.05909 -24.92571 -24.05795 -23.42637 -21.51696 -21.18828 -19.81215 -19.12596 -18.77654 -17.81138 -17.58959 -17.23593 -16.90397 -16.85441 -16.69685 -16.25170 -15.97090 -15.28970 -15.03696 -14.76720 -14.65363 -14.59210 -14.33265 -13.85374 -13.60428 -13.51508 -13.36453 -12.91230 -12.83646 -12.54169 -12.45975 -12.32833 -12.24159 -12.12156 -12.05011 -11.65283 -11.32572 -11.21456 -10.66767 -10.35856 -9.91733 -9.65485 -9.22746 -8.26323 -6.43251 -0.19470 0.01334 0.95389 1.33926 1.43450 1.45198 1.54099 1.85742 2.37333 2.39660 2.72786 3.00227 3.17174 3.57239 3.75296 3.93468 3.94588 4.07185 4.15058 4.19440 4.28976 4.56527 4.68676 4.71913 4.79198 4.94670 5.00471 5.04705 5.06212 5.20388 5.21362 5.34364 5.43828 5.67760 5.74980 5.85900 6.05444 6.63166 6.77900 7.26802 7.28907 7.35206 8.79111 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.018857 B = 0.003264 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.523639 B = 8576.406474 C = 9620.370294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.027 3.973 3 Si 0.964 3.036 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.556 4.556 8 H 0.071 0.929 9 C 0.232 3.768 10 O -0.588 6.588 11 C -0.109 4.109 12 C 0.100 3.900 13 N -0.623 5.623 14 C 0.712 3.288 15 O -0.617 6.617 16 N -0.669 5.669 17 C 0.195 3.805 18 C -0.174 4.174 19 C 0.112 3.888 20 F -0.141 7.141 21 C -0.146 4.146 22 C -0.046 4.046 23 C -0.081 4.081 24 Cl -0.046 7.046 25 C 0.127 3.873 26 H 0.270 0.730 27 H 0.375 0.625 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.421 0.579 33 H 0.128 0.872 34 H 0.181 0.819 35 H 0.187 0.813 36 H 0.046 0.954 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.122 -20.069 7.443 21.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.174 4.174 3 Si 0.789 3.211 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.594 4.594 8 H 0.090 0.910 9 C 0.192 3.808 10 O -0.396 6.396 11 C -0.147 4.147 12 C -0.021 4.021 13 N -0.359 5.359 14 C 0.415 3.585 15 O -0.497 6.497 16 N -0.318 5.318 17 C 0.097 3.903 18 C -0.196 4.196 19 C 0.092 3.908 20 F -0.120 7.120 21 C -0.165 4.165 22 C -0.065 4.065 23 C -0.110 4.110 24 Cl -0.017 7.017 25 C 0.003 3.997 26 H 0.079 0.921 27 H 0.225 0.775 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.111 0.889 32 H 0.261 0.739 33 H 0.146 0.854 34 H 0.198 0.802 35 H 0.204 0.796 36 H 0.064 0.936 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.373 -20.027 7.707 21.503 hybrid contribution -0.074 1.992 -0.363 2.026 sum -1.447 -18.036 7.344 19.527 Atomic orbital electron populations 1.69760 1.07219 1.28484 1.50163 1.25820 0.95706 1.02857 0.93028 0.85463 0.78745 0.78633 0.78249 1.20056 1.21304 1.18837 1.21819 0.94075 0.91107 1.52383 0.91045 1.19867 0.86709 0.93315 0.80933 1.86074 1.51466 1.54728 1.47365 1.22601 0.97265 0.93241 1.01581 1.22244 0.88098 0.95984 0.95807 1.47910 1.27079 1.08842 1.52028 1.15599 0.81529 0.81676 0.79697 1.90881 1.41283 1.65276 1.52288 1.42440 1.35397 1.04565 1.49408 1.17039 0.87615 0.92115 0.93488 1.21152 0.92082 1.02703 1.03695 1.17743 0.79900 0.94295 0.98898 1.91500 1.39888 1.86194 1.94400 1.21403 0.98844 0.94318 1.01983 1.21129 0.90003 1.00359 0.95004 1.20850 0.89904 0.96679 1.03609 1.98375 1.23351 1.83210 1.96780 1.22801 1.00226 0.76755 0.99872 0.92101 0.77537 0.89379 0.89008 0.90555 0.88873 0.73909 0.85442 0.80216 0.79595 0.93578 0.93714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.65 10.69 21.45 0.23 -49.42 16 2 C 0.03 1.38 5.29 84.66 0.45 1.83 16 3 Si 0.96 41.28 29.54 68.60 2.03 43.30 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.56 -28.24 8.25 25.60 0.21 -28.03 16 8 H 0.07 3.49 7.78 -2.91 -0.02 3.47 16 9 C 0.23 10.93 0.88 -10.15 -0.01 10.92 16 10 O -0.59 -29.73 13.17 -148.98 -1.96 -31.69 16 11 C -0.11 -3.92 6.13 31.78 0.19 -3.73 16 12 C 0.10 3.11 6.16 86.73 0.53 3.64 16 13 N -0.62 -24.83 3.33 -829.65 -2.76 -27.59 16 14 C 0.71 28.38 8.33 179.05 1.49 29.88 16 15 O -0.62 -29.59 14.01 -3.99 -0.06 -29.65 16 16 N -0.67 -20.03 5.01 -317.11 -1.59 -21.62 16 17 C 0.19 5.43 6.30 38.15 0.24 5.67 16 18 C -0.17 -5.43 8.68 22.43 0.19 -5.24 16 19 C 0.11 2.81 7.30 22.36 0.16 2.97 16 20 F -0.14 -3.84 17.27 44.97 0.78 -3.06 16 21 C -0.15 -2.38 10.02 22.34 0.22 -2.15 16 22 C -0.05 -0.67 9.82 22.27 0.22 -0.46 16 23 C -0.08 -1.64 6.34 22.44 0.14 -1.50 16 24 Cl -0.05 -0.81 27.94 -2.72 -0.08 -0.88 16 25 C 0.13 6.10 5.51 86.84 0.48 6.58 16 26 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 27 H 0.38 20.15 7.24 -74.06 -0.54 19.62 16 28 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 29 H 0.09 3.05 8.03 -2.38 -0.02 3.03 16 30 H 0.08 2.11 8.13 -2.39 -0.02 2.09 16 31 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.42 10.19 7.04 -92.71 -0.65 9.53 16 33 H 0.13 4.93 6.19 -2.91 -0.02 4.91 16 34 H 0.18 1.65 8.06 -2.91 -0.02 1.62 16 35 H 0.19 1.27 8.06 -2.91 -0.02 1.25 16 36 H 0.05 2.30 8.03 -2.39 -0.02 2.29 16 37 H 0.04 2.50 7.48 -2.39 -0.02 2.48 16 Total: -1.00 -65.29 331.92 1.08 -64.21 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: -0.04 Total: 36.03 kcal Atomic # 6 Polarization: 15.85 SS G_CDS: 4.53 Total: 20.38 kcal Atomic # 7 Polarization: -94.52 SS G_CDS: -4.12 Total: -98.64 kcal Atomic # 8 Polarization: -59.32 SS G_CDS: -2.02 Total: -61.34 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.78 Total: -3.06 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.30 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.88 kcal Total: -65.29 1.08 -64.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364255708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.341 kcal (2) G-P(sol) polarization free energy of solvation -65.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds