Wall clock time and date at job start Tue Mar 31 2020 15:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99969 * 2 1 4 4 H 1.48494 * 109.47210 * 274.91053 * 3 2 1 5 5 H 1.48498 * 109.46950 * 34.91270 * 3 2 1 6 6 H 1.48497 * 109.47048 * 154.90756 * 3 2 1 7 7 C 1.37875 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00549 * 355.18478 * 7 2 1 9 9 C 1.50709 * 119.99836 * 175.18777 * 7 2 1 10 10 O 1.42902 * 110.63767 * 62.24949 * 9 7 2 11 11 C 1.55154 * 110.86989 * 299.00197 * 9 7 2 12 12 C 1.55140 * 101.48133 * 205.89808 * 11 9 7 13 13 N 1.47422 * 104.72110 * 37.29664 * 12 11 9 14 14 C 1.34772 * 125.64662 * 155.81817 * 13 12 11 15 15 O 1.21588 * 119.99978 * 179.69384 * 14 13 12 16 16 N 1.34776 * 120.00085 * 359.68918 * 14 13 12 17 17 C 1.40007 * 120.00280 * 185.70548 * 16 14 13 18 18 C 1.38813 * 120.05883 * 24.77634 * 17 16 14 19 19 C 1.38331 * 119.91738 * 180.30148 * 18 17 16 20 20 F 1.35095 * 119.97687 * 179.71718 * 19 18 17 21 21 C 1.38514 * 120.03931 * 359.42520 * 19 18 17 22 22 C 1.38243 * 120.11997 * 0.59993 * 21 19 18 23 23 C 1.38232 * 120.07953 * 359.67688 * 22 21 19 24 24 Cl 1.73601 * 120.01547 * 180.02562 * 23 22 21 25 25 C 1.47026 * 108.70527 * 335.55088 * 13 12 11 26 26 H 0.96998 * 120.00239 * 359.97438 * 1 2 3 27 27 H 0.96697 * 114.00377 * 61.69324 * 10 9 7 28 28 H 1.09000 * 111.00344 * 324.13414 * 11 9 7 29 29 H 1.08996 * 111.00546 * 87.99306 * 11 9 7 30 30 H 1.08998 * 110.49591 * 278.45324 * 12 11 9 31 31 H 1.09001 * 110.33952 * 156.06016 * 12 11 9 32 32 H 0.96996 * 120.00124 * 5.70209 * 16 14 13 33 33 H 1.07999 * 120.04023 * 0.02562 * 18 17 16 34 34 H 1.08000 * 119.94022 * 180.27621 * 21 19 18 35 35 H 1.07993 * 119.95329 * 179.70256 * 22 21 19 36 36 H 1.08996 * 109.88337 * 120.70401 * 25 13 12 37 37 H 1.08995 * 109.88193 * 241.71546 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3928 2.1064 -1.3949 5 1 1.5023 2.6205 0.8013 6 1 3.5947 1.4125 0.5937 7 6 2.0045 -1.1940 -0.0005 8 1 1.4675 -2.1277 0.0776 9 6 3.5076 -1.1962 -0.1100 10 8 4.0949 -0.5257 1.0069 11 6 3.9657 -0.5474 -1.4429 12 6 5.3402 -1.2321 -1.6633 13 7 5.1479 -2.6172 -1.1965 14 6 5.8682 -3.6860 -1.5905 15 8 5.6242 -4.7857 -1.1330 16 7 6.8590 -3.5357 -2.4917 17 6 7.5278 -4.6599 -2.9908 18 6 6.8996 -5.8977 -2.9951 19 6 7.5654 -7.0077 -3.4831 20 9 6.9572 -8.2140 -3.4825 21 6 8.8530 -6.8819 -3.9779 22 6 9.4804 -5.6501 -3.9740 23 6 8.8218 -4.5387 -3.4823 24 17 9.6110 -2.9924 -3.4788 25 6 4.0445 -2.6385 -0.2251 26 1 -0.4850 0.8400 0.0004 27 1 3.9024 -0.9391 1.8596 28 1 3.2734 -0.7842 -2.2508 29 1 4.0814 0.5308 -1.3330 30 1 6.1121 -0.7369 -1.0741 31 1 5.6036 -1.2213 -2.7209 32 1 7.1087 -2.6488 -2.7947 33 1 5.8939 -5.9949 -2.6137 34 1 9.3697 -7.7487 -4.3627 35 1 10.4861 -5.5560 -4.3561 36 1 3.2539 -3.3014 -0.5767 37 1 4.4099 -2.9789 0.7436 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364255717.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:40 Heat of formation + Delta-G solvation = -79.280536 kcal Electronic energy + Delta-G solvation = -25515.240281 eV Core-core repulsion = 21426.815877 eV Total energy + Delta-G solvation = -4088.424404 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.08719 -40.87889 -39.19171 -37.80441 -36.71817 -34.89929 -34.71475 -32.50334 -31.00980 -30.46661 -29.46717 -28.39055 -25.47121 -23.68844 -22.91262 -22.49369 -20.27981 -19.77185 -18.82372 -17.83516 -17.54305 -16.96002 -16.53829 -16.05914 -15.86875 -15.60437 -15.06716 -14.96046 -14.65440 -14.23675 -13.95773 -13.68239 -13.49218 -13.35767 -12.98366 -12.81578 -12.70190 -12.26910 -12.04399 -11.81156 -11.65520 -11.50084 -11.29293 -11.23936 -10.77349 -10.67318 -10.40610 -10.21218 -9.94363 -9.07672 -8.99229 -8.75816 -8.62095 -8.50610 -8.18012 -6.27838 -4.40797 0.67208 0.87334 1.75466 2.41944 2.93909 3.23385 3.37382 3.38391 3.58709 3.74310 4.05424 4.35823 4.36265 4.67454 4.85429 4.99045 5.00784 5.03566 5.16256 5.44596 5.48325 5.52606 5.61312 5.68175 5.73944 5.92815 5.96475 6.12680 6.33231 6.35154 6.49797 6.54006 6.59330 6.89177 7.04507 7.39121 7.86898 8.12252 8.45422 8.65661 8.80356 9.34276 10.82180 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.020649 B = 0.003233 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.657227 B = 8657.547039 C = 9638.862877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.089 3.911 3 Si 0.865 3.135 4 H -0.286 1.286 5 H -0.298 1.298 6 H -0.213 1.213 7 C -0.553 4.553 8 H 0.079 0.921 9 C 0.217 3.783 10 O -0.571 6.571 11 C -0.120 4.120 12 C 0.095 3.905 13 N -0.617 5.617 14 C 0.718 3.282 15 O -0.572 6.572 16 N -0.680 5.680 17 C 0.224 3.776 18 C -0.162 4.162 19 C 0.131 3.869 20 F -0.131 7.131 21 C -0.173 4.173 22 C -0.057 4.057 23 C -0.092 4.092 24 Cl -0.061 7.061 25 C 0.112 3.888 26 H 0.267 0.733 27 H 0.365 0.635 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.412 0.588 33 H 0.171 0.829 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.077 0.923 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.193 -7.041 -8.851 22.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.117 4.117 3 Si 0.692 3.308 4 H -0.213 1.213 5 H -0.225 1.225 6 H -0.136 1.136 7 C -0.590 4.590 8 H 0.097 0.903 9 C 0.177 3.823 10 O -0.378 6.378 11 C -0.158 4.158 12 C -0.028 4.028 13 N -0.353 5.353 14 C 0.420 3.580 15 O -0.450 6.450 16 N -0.327 5.327 17 C 0.125 3.875 18 C -0.184 4.184 19 C 0.111 3.889 20 F -0.110 7.110 21 C -0.193 4.193 22 C -0.076 4.076 23 C -0.122 4.122 24 Cl -0.032 7.032 25 C -0.010 4.010 26 H 0.077 0.923 27 H 0.213 0.787 28 H 0.109 0.891 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.249 0.751 33 H 0.189 0.811 34 H 0.161 0.839 35 H 0.164 0.836 36 H 0.095 0.905 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 19.054 -7.225 -8.935 22.250 hybrid contribution 0.110 0.971 0.193 0.996 sum 19.163 -6.254 -8.741 21.972 Atomic orbital electron populations 1.69930 1.06740 1.27687 1.47672 1.24951 0.94574 0.99741 0.92422 0.87249 0.83386 0.82105 0.78016 1.21340 1.22510 1.13570 1.21149 0.88105 0.95304 1.54466 0.90280 1.20002 0.92682 0.85386 0.84277 1.86583 1.77629 1.56538 1.17082 1.23067 0.93829 0.99771 0.99123 1.22503 1.00148 0.81919 0.98233 1.47762 1.35300 1.06459 1.45766 1.15374 0.79135 0.84166 0.79284 1.90884 1.70894 1.23670 1.59564 1.42792 1.36705 1.08694 1.44521 1.16914 0.88868 0.87401 0.94352 1.21438 1.03622 0.89938 1.03354 1.17523 0.91559 0.80735 0.99098 1.91528 1.83135 1.42159 1.94169 1.21008 0.94305 0.98814 1.05161 1.20630 0.99957 0.89692 0.97295 1.20603 0.92299 0.88656 1.10689 1.98370 1.79607 1.27731 1.97534 1.22815 0.86636 1.01004 0.90537 0.92299 0.78750 0.89125 0.90497 0.91137 0.91861 0.75058 0.81138 0.83854 0.83634 0.90471 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.52 13.96 55.43 0.77 -24.75 16 2 C 0.09 2.37 5.44 -17.82 -0.10 2.28 16 3 Si 0.87 19.99 24.27 -169.99 -4.13 15.87 16 4 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.30 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.21 -4.71 5.12 56.52 0.29 -4.42 16 7 C -0.55 -14.10 8.81 -34.44 -0.30 -14.40 16 8 H 0.08 2.22 7.82 -52.49 -0.41 1.81 16 9 C 0.22 4.52 0.67 -89.93 -0.06 4.46 16 10 O -0.57 -11.52 9.90 -35.23 -0.35 -11.87 16 11 C -0.12 -2.25 5.06 -24.46 -0.12 -2.37 16 12 C 0.09 1.44 6.53 -2.41 -0.02 1.43 16 13 N -0.62 -10.61 3.32 -176.10 -0.59 -11.19 16 14 C 0.72 12.17 8.29 -86.92 -0.72 11.45 16 15 O -0.57 -11.25 13.84 5.29 0.07 -11.18 16 16 N -0.68 -9.21 5.14 -14.20 -0.07 -9.28 16 17 C 0.22 2.88 6.43 -83.65 -0.54 2.34 16 18 C -0.16 -2.21 8.69 -39.33 -0.34 -2.56 16 19 C 0.13 1.54 7.30 -39.45 -0.29 1.26 16 20 F -0.13 -1.64 17.27 2.25 0.04 -1.60 16 21 C -0.17 -1.55 10.02 -39.48 -0.40 -1.94 16 22 C -0.06 -0.48 9.82 -39.58 -0.39 -0.87 16 23 C -0.09 -0.97 6.34 -39.32 -0.25 -1.22 16 24 Cl -0.06 -0.58 27.78 -51.86 -1.44 -2.02 16 25 C 0.11 2.17 6.21 -3.06 -0.02 2.15 16 26 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.36 6.41 9.08 45.56 0.41 6.83 16 28 H 0.09 1.74 8.04 -51.93 -0.42 1.32 16 29 H 0.08 1.46 5.37 -51.93 -0.28 1.18 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.77 7.38 -51.93 -0.38 0.39 16 32 H 0.41 4.75 6.30 -40.82 -0.26 4.49 16 33 H 0.17 2.73 5.79 -52.49 -0.30 2.42 16 34 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.15 0.84 8.06 -52.49 -0.42 0.41 16 36 H 0.08 1.61 7.66 -51.93 -0.40 1.21 16 37 H 0.06 1.15 8.06 -51.93 -0.42 0.73 16 LS Contribution 322.51 15.07 4.86 4.86 Total: -1.00 -30.26 322.51 -7.34 -37.60 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -2.97 Total: 11.57 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -3.54 Total: 2.00 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: 0.12 Total: -45.22 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.28 Total: -23.05 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.13 Total: 15.87 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.44 Total: -2.02 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.26 -7.34 -37.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364255717.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.684 kcal (2) G-P(sol) polarization free energy of solvation -30.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds