Wall clock time and date at job start Tue Mar 31 2020 15:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99969 * 2 1 4 4 H 1.48494 * 109.47210 * 274.91053 * 3 2 1 5 5 H 1.48498 * 109.46950 * 34.91270 * 3 2 1 6 6 H 1.48497 * 109.47048 * 154.90756 * 3 2 1 7 7 C 1.37875 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00549 * 355.18478 * 7 2 1 9 9 C 1.50709 * 119.99836 * 175.18777 * 7 2 1 10 10 O 1.42902 * 110.63767 * 62.24949 * 9 7 2 11 11 C 1.55154 * 110.86989 * 299.00197 * 9 7 2 12 12 C 1.55140 * 101.48133 * 205.89808 * 11 9 7 13 13 N 1.47422 * 104.72110 * 37.29664 * 12 11 9 14 14 C 1.34772 * 125.64662 * 155.81817 * 13 12 11 15 15 O 1.21588 * 119.99978 * 179.69384 * 14 13 12 16 16 N 1.34776 * 120.00085 * 359.68918 * 14 13 12 17 17 C 1.40007 * 120.00280 * 185.70548 * 16 14 13 18 18 C 1.38813 * 120.05883 * 24.77634 * 17 16 14 19 19 C 1.38331 * 119.91738 * 180.30148 * 18 17 16 20 20 F 1.35095 * 119.97687 * 179.71718 * 19 18 17 21 21 C 1.38514 * 120.03931 * 359.42520 * 19 18 17 22 22 C 1.38243 * 120.11997 * 0.59993 * 21 19 18 23 23 C 1.38232 * 120.07953 * 359.67688 * 22 21 19 24 24 Cl 1.73601 * 120.01547 * 180.02562 * 23 22 21 25 25 C 1.47026 * 108.70527 * 335.55088 * 13 12 11 26 26 H 0.96998 * 120.00239 * 359.97438 * 1 2 3 27 27 H 0.96697 * 114.00377 * 61.69324 * 10 9 7 28 28 H 1.09000 * 111.00344 * 324.13414 * 11 9 7 29 29 H 1.08996 * 111.00546 * 87.99306 * 11 9 7 30 30 H 1.08998 * 110.49591 * 278.45324 * 12 11 9 31 31 H 1.09001 * 110.33952 * 156.06016 * 12 11 9 32 32 H 0.96996 * 120.00124 * 5.70209 * 16 14 13 33 33 H 1.07999 * 120.04023 * 0.02562 * 18 17 16 34 34 H 1.08000 * 119.94022 * 180.27621 * 21 19 18 35 35 H 1.07993 * 119.95329 * 179.70256 * 22 21 19 36 36 H 1.08996 * 109.88337 * 120.70401 * 25 13 12 37 37 H 1.08995 * 109.88193 * 241.71546 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3928 2.1064 -1.3949 5 1 1.5023 2.6205 0.8013 6 1 3.5947 1.4125 0.5937 7 6 2.0045 -1.1940 -0.0005 8 1 1.4675 -2.1277 0.0776 9 6 3.5076 -1.1962 -0.1100 10 8 4.0949 -0.5257 1.0069 11 6 3.9657 -0.5474 -1.4429 12 6 5.3402 -1.2321 -1.6633 13 7 5.1479 -2.6172 -1.1965 14 6 5.8682 -3.6860 -1.5905 15 8 5.6242 -4.7857 -1.1330 16 7 6.8590 -3.5357 -2.4917 17 6 7.5278 -4.6599 -2.9908 18 6 6.8996 -5.8977 -2.9951 19 6 7.5654 -7.0077 -3.4831 20 9 6.9572 -8.2140 -3.4825 21 6 8.8530 -6.8819 -3.9779 22 6 9.4804 -5.6501 -3.9740 23 6 8.8218 -4.5387 -3.4823 24 17 9.6110 -2.9924 -3.4788 25 6 4.0445 -2.6385 -0.2251 26 1 -0.4850 0.8400 0.0004 27 1 3.9024 -0.9391 1.8596 28 1 3.2734 -0.7842 -2.2508 29 1 4.0814 0.5308 -1.3330 30 1 6.1121 -0.7369 -1.0741 31 1 5.6036 -1.2213 -2.7209 32 1 7.1087 -2.6488 -2.7947 33 1 5.8939 -5.9949 -2.6137 34 1 9.3697 -7.7487 -4.3627 35 1 10.4861 -5.5560 -4.3561 36 1 3.2539 -3.3014 -0.5767 37 1 4.4099 -2.9789 0.7436 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364255717.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:39 Heat of formation + Delta-G solvation = -101.004123 kcal Electronic energy + Delta-G solvation = -25516.182287 eV Core-core repulsion = 21426.815877 eV Total energy + Delta-G solvation = -4089.366410 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.01337 -42.07152 -40.35481 -39.14960 -37.50312 -36.31239 -35.95810 -34.51288 -32.26510 -31.49550 -30.58034 -29.90121 -27.18157 -24.83269 -24.07167 -23.54319 -21.70167 -21.23473 -20.00746 -19.38324 -18.86344 -17.85952 -17.53582 -17.19481 -17.06303 -16.80834 -16.68160 -16.48889 -16.04942 -15.39082 -15.07856 -14.86915 -14.77847 -14.57812 -14.47905 -14.09898 -14.00445 -13.60458 -13.29615 -13.23508 -12.93129 -12.85433 -12.50769 -12.38512 -12.22963 -12.07159 -11.86851 -11.73471 -11.28168 -10.92272 -10.79449 -10.27878 -9.94233 -9.78224 -9.22309 -8.35661 -6.52230 -0.18644 0.02026 0.94060 1.23406 1.39649 1.49481 1.75441 1.77590 2.41384 2.41899 2.59172 3.00462 3.15560 3.52132 3.55084 3.68550 3.92440 3.95490 4.02367 4.16774 4.20891 4.38122 4.47942 4.63993 4.74858 4.77426 4.89869 4.96081 4.98749 5.03317 5.10041 5.16353 5.38548 5.51776 5.67885 5.76503 6.06683 6.59025 6.62683 7.11673 7.16783 7.29575 8.78416 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.020649 B = 0.003233 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.657227 B = 8657.547039 C = 9638.862877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.035 3.965 3 Si 0.930 3.070 4 H -0.275 1.275 5 H -0.310 1.310 6 H -0.191 1.191 7 C -0.553 4.553 8 H 0.034 0.966 9 C 0.220 3.780 10 O -0.568 6.568 11 C -0.123 4.123 12 C 0.102 3.898 13 N -0.621 5.621 14 C 0.717 3.283 15 O -0.607 6.607 16 N -0.667 5.667 17 C 0.201 3.799 18 C -0.184 4.184 19 C 0.115 3.885 20 F -0.141 7.141 21 C -0.152 4.152 22 C -0.043 4.043 23 C -0.087 4.087 24 Cl -0.047 7.047 25 C 0.122 3.878 26 H 0.268 0.732 27 H 0.376 0.624 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.422 0.578 33 H 0.138 0.862 34 H 0.178 0.822 35 H 0.185 0.815 36 H 0.049 0.951 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.627 -6.152 -10.362 26.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.165 4.165 3 Si 0.755 3.245 4 H -0.201 1.201 5 H -0.238 1.238 6 H -0.112 1.112 7 C -0.590 4.590 8 H 0.053 0.947 9 C 0.179 3.821 10 O -0.376 6.376 11 C -0.161 4.161 12 C -0.019 4.019 13 N -0.356 5.356 14 C 0.420 3.580 15 O -0.487 6.487 16 N -0.315 5.315 17 C 0.103 3.897 18 C -0.206 4.206 19 C 0.095 3.905 20 F -0.120 7.120 21 C -0.172 4.172 22 C -0.062 4.062 23 C -0.117 4.117 24 Cl -0.019 7.019 25 C -0.002 4.002 26 H 0.077 0.923 27 H 0.225 0.775 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.118 0.882 32 H 0.262 0.738 33 H 0.156 0.844 34 H 0.195 0.805 35 H 0.202 0.798 36 H 0.068 0.932 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 23.540 -6.344 -10.476 26.535 hybrid contribution -1.251 0.544 0.650 1.511 sum 22.290 -5.799 -9.826 25.040 Atomic orbital electron populations 1.70077 1.08756 1.28552 1.50240 1.25814 0.95120 1.03493 0.92102 0.86258 0.82673 0.77120 0.78464 1.20088 1.23800 1.11232 1.21399 0.90953 0.93469 1.53221 0.94745 1.19785 0.89793 0.86818 0.85717 1.86515 1.77023 1.56565 1.17531 1.23002 0.95779 1.00279 0.97069 1.22599 0.98293 0.80133 1.00909 1.47657 1.34850 1.07562 1.45571 1.15460 0.79579 0.83390 0.79570 1.90876 1.71963 1.24989 1.60849 1.42511 1.35762 1.09606 1.43617 1.17026 0.90009 0.86734 0.95953 1.21241 1.02828 0.91524 1.05020 1.17741 0.92769 0.79896 1.00066 1.91502 1.83568 1.42549 1.94350 1.21384 0.92633 1.00276 1.02883 1.21102 1.01139 0.88469 0.95491 1.20737 0.91342 0.89929 1.09700 1.98380 1.79063 1.26978 1.97430 1.22445 0.86920 0.99551 0.91286 0.92341 0.77452 0.90225 0.89847 0.89151 0.88206 0.73790 0.84450 0.80480 0.79806 0.93249 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.24 13.96 21.45 0.30 -55.94 16 2 C 0.03 1.91 5.44 84.65 0.46 2.37 16 3 Si 0.93 41.10 24.27 68.60 1.67 42.77 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.31 -14.25 7.11 99.48 0.71 -13.55 16 6 H -0.19 -7.69 5.12 99.48 0.51 -7.18 16 7 C -0.55 -29.21 8.81 25.60 0.23 -28.99 16 8 H 0.03 2.07 7.82 -2.91 -0.02 2.05 16 9 C 0.22 9.10 0.67 -10.35 -0.01 9.09 16 10 O -0.57 -21.83 9.90 -148.98 -1.48 -23.31 16 11 C -0.12 -4.40 5.06 32.07 0.16 -4.24 16 12 C 0.10 2.81 6.53 86.94 0.57 3.38 16 13 N -0.62 -20.83 3.32 -829.31 -2.76 -23.58 16 14 C 0.72 24.18 8.29 179.06 1.48 25.66 16 15 O -0.61 -24.70 13.84 -3.99 -0.06 -24.76 16 16 N -0.67 -17.11 5.14 -317.11 -1.63 -18.74 16 17 C 0.20 4.90 6.43 38.14 0.25 5.15 16 18 C -0.18 -5.10 8.69 22.43 0.19 -4.90 16 19 C 0.12 2.61 7.30 22.36 0.16 2.77 16 20 F -0.14 -3.51 17.27 44.97 0.78 -2.73 16 21 C -0.15 -2.19 10.02 22.34 0.22 -1.97 16 22 C -0.04 -0.55 9.82 22.27 0.22 -0.33 16 23 C -0.09 -1.56 6.34 22.44 0.14 -1.42 16 24 Cl -0.05 -0.73 27.78 -2.72 -0.08 -0.80 16 25 C 0.12 4.79 6.21 86.73 0.54 5.33 16 26 H 0.27 15.11 8.31 -92.71 -0.77 14.33 16 27 H 0.38 12.72 9.08 -74.06 -0.67 12.05 16 28 H 0.08 3.00 8.04 -2.39 -0.02 2.98 16 29 H 0.08 2.88 5.37 -2.39 -0.01 2.87 16 30 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.10 2.05 7.38 -2.39 -0.02 2.03 16 32 H 0.42 8.59 6.30 -92.71 -0.58 8.01 16 33 H 0.14 4.73 5.79 -2.91 -0.02 4.71 16 34 H 0.18 1.38 8.06 -2.91 -0.02 1.36 16 35 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 36 H 0.05 2.19 7.66 -2.39 -0.02 2.17 16 37 H 0.06 2.42 8.06 -2.39 -0.02 2.40 16 Total: -1.00 -69.72 322.51 1.07 -68.65 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: -0.30 Total: 26.54 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 4.62 Total: 11.91 kcal Atomic # 7 Polarization: -94.18 SS G_CDS: -4.09 Total: -98.27 kcal Atomic # 8 Polarization: -46.54 SS G_CDS: -1.53 Total: -48.07 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.78 Total: -2.73 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 1.67 Total: 42.77 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.08 Total: -0.80 kcal Total: -69.72 1.07 -68.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364255717.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.354 kcal (2) G-P(sol) polarization free energy of solvation -69.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds