Wall clock time and date at job start Tue Mar 31 2020 15:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00146 * 2 1 4 4 H 1.48504 * 109.46893 * 270.00603 * 3 2 1 5 5 H 1.48499 * 109.47257 * 30.00285 * 3 2 1 6 6 H 1.48495 * 109.47109 * 150.00652 * 3 2 1 7 7 C 1.37880 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00343 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99701 * 359.97438 * 7 2 1 10 10 O 1.42897 * 110.88905 * 62.42887 * 9 7 2 11 11 C 1.55158 * 111.03523 * 186.33212 * 9 7 2 12 12 C 1.54340 * 103.02005 * 153.39305 * 11 9 7 13 13 N 1.47015 * 107.26660 * 338.14039 * 12 11 9 14 14 C 1.34775 * 125.65170 * 178.84902 * 13 12 11 15 15 O 1.21587 * 120.00259 * 179.69326 * 14 13 12 16 16 N 1.34779 * 119.99415 * 359.69074 * 14 13 12 17 17 C 1.39947 * 119.99674 * 185.31756 * 16 14 13 18 18 C 1.38859 * 120.05001 * 213.54904 * 17 16 14 19 19 C 1.38316 * 119.93007 * 180.29790 * 18 17 16 20 20 F 1.35106 * 119.98570 * 179.72554 * 19 18 17 21 21 C 1.38512 * 120.03380 * 359.70870 * 19 18 17 22 22 C 1.38344 * 120.09978 * 0.02562 * 21 19 18 23 23 Cl 1.73593 * 119.96619 * 180.02562 * 22 21 19 24 24 C 1.38266 * 120.06939 * 0.02562 * 22 21 19 25 25 C 1.47425 * 108.70229 * 358.58560 * 13 12 11 26 26 H 0.97006 * 119.99912 * 359.97438 * 1 2 3 27 27 H 0.96705 * 114.00071 * 297.56926 * 10 9 7 28 28 H 1.09003 * 110.72038 * 271.95220 * 11 9 7 29 29 H 1.08998 * 110.72199 * 35.22706 * 11 9 7 30 30 H 1.08996 * 109.98698 * 218.66004 * 12 11 9 31 31 H 1.09000 * 109.77546 * 97.49845 * 12 11 9 32 32 H 0.96993 * 120.00651 * 5.32220 * 16 14 13 33 33 H 1.07996 * 120.03273 * 0.02562 * 18 17 16 34 34 H 1.08001 * 119.95126 * 180.02562 * 21 19 18 35 35 H 1.07992 * 120.01955 * 179.97438 * 24 22 21 36 36 H 1.09003 * 110.36937 * 143.19548 * 25 13 12 37 37 H 1.08997 * 110.36705 * 265.40512 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.4606 -2.6311 -1.1837 11 6 2.2191 -3.7012 0.1585 12 6 1.3291 -4.7805 0.8106 13 7 0.2064 -4.0871 1.4589 14 6 -0.8064 -4.6805 2.1210 15 8 -1.6823 -4.0042 2.6249 16 7 -0.8483 -6.0236 2.2246 17 6 -1.9547 -6.6457 2.8141 18 6 -1.7875 -7.8139 3.5459 19 6 -2.8835 -8.4300 4.1223 20 9 -2.7229 -9.5696 4.8300 21 6 -4.1458 -7.8790 3.9747 22 6 -4.3131 -6.7123 3.2504 23 17 -5.8965 -6.0244 3.0681 24 6 -3.2205 -6.0934 2.6716 25 6 0.3754 -2.6348 1.2702 26 1 -0.4850 0.8401 0.0004 27 1 -0.2254 -1.9558 -1.2758 28 1 2.5836 -4.0340 -0.8133 29 1 3.0497 -3.4431 0.8154 30 1 1.9010 -5.3357 1.5540 31 1 0.9532 -5.4600 0.0457 32 1 -0.1118 -6.5591 1.8907 33 1 -0.8033 -8.2432 3.6613 34 1 -5.0006 -8.3610 4.4256 35 1 -3.3521 -5.1829 2.1061 36 1 -0.5922 -2.1570 1.1168 37 1 0.8818 -2.1968 2.1303 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364313866.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:32 Heat of formation + Delta-G solvation = -95.203522 kcal Electronic energy + Delta-G solvation = -25321.398788 eV Core-core repulsion = 21232.283911 eV Total energy + Delta-G solvation = -4089.114877 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.15489 -40.61571 -38.95794 -37.49303 -36.59419 -34.60357 -34.31048 -32.29747 -30.69981 -30.59726 -29.33665 -27.85766 -25.30110 -23.46517 -23.10790 -22.28386 -19.88163 -19.77535 -18.52286 -17.69418 -17.15705 -16.59822 -16.52888 -15.89525 -15.83030 -15.33639 -15.12031 -14.87609 -14.56388 -14.34818 -13.89816 -13.45074 -13.27666 -13.15001 -12.91236 -12.45756 -12.25127 -11.92370 -11.79902 -11.72691 -11.49175 -11.18766 -11.08604 -10.93283 -10.72834 -10.52429 -10.33737 -10.23498 -9.87230 -9.46498 -8.89921 -8.76633 -8.51145 -8.38253 -7.88903 -6.34035 -4.44083 0.79109 0.91508 1.85561 2.67379 3.10810 3.17599 3.25663 3.27417 3.56359 4.01387 4.11243 4.23094 4.65271 4.79174 4.91304 4.93570 4.99106 5.24702 5.35477 5.48997 5.62579 5.70460 5.84573 5.88742 5.98220 6.08861 6.20716 6.38506 6.57883 6.71361 6.74120 6.75544 7.04876 7.19496 7.36572 7.67730 7.94528 8.17799 8.59589 8.74628 9.22431 9.31237 10.73038 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.019574 B = 0.002953 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.137080 B = 9480.938998 C =10427.665601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.249 3.751 10 O -0.582 6.582 11 C -0.115 4.115 12 C 0.099 3.901 13 N -0.619 5.619 14 C 0.713 3.287 15 O -0.573 6.573 16 N -0.687 5.687 17 C 0.225 3.775 18 C -0.188 4.188 19 C 0.133 3.867 20 F -0.133 7.133 21 C -0.174 4.174 22 C 0.014 3.986 23 Cl -0.054 7.054 24 C -0.124 4.124 25 C 0.112 3.888 26 H 0.271 0.729 27 H 0.382 0.618 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.409 0.591 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.157 0.843 36 H 0.088 0.912 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.000 -15.412 5.239 16.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.578 4.578 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.391 6.391 11 C -0.153 4.153 12 C -0.024 4.024 13 N -0.354 5.354 14 C 0.415 3.585 15 O -0.450 6.450 16 N -0.335 5.335 17 C 0.127 3.873 18 C -0.210 4.210 19 C 0.113 3.887 20 F -0.111 7.111 21 C -0.194 4.194 22 C -0.013 4.013 23 Cl -0.025 7.025 24 C -0.145 4.145 25 C -0.010 4.010 26 H 0.081 0.919 27 H 0.232 0.768 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.245 0.755 33 H 0.161 0.839 34 H 0.162 0.838 35 H 0.175 0.825 36 H 0.107 0.893 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.517 -15.209 5.497 16.791 hybrid contribution 0.390 0.942 0.144 1.030 sum -4.127 -14.267 5.641 15.887 Atomic orbital electron populations 1.69704 1.05987 1.28045 1.49226 1.25080 0.95051 0.99811 0.93235 0.86396 0.79767 0.82381 0.78334 1.20367 1.20974 1.19690 1.21434 0.93658 0.89930 1.52751 0.91456 1.19627 0.86573 0.91646 0.81304 1.86107 1.51538 1.57186 1.44255 1.22598 0.97523 0.94982 1.00215 1.22052 0.88233 0.96368 0.95769 1.48028 1.22987 1.10303 1.54121 1.15494 0.82562 0.80585 0.79816 1.90941 1.39218 1.62504 1.52308 1.42780 1.21059 1.06503 1.63133 1.16938 0.86454 0.91490 0.92406 1.20811 0.99397 0.98845 1.01983 1.16939 0.93145 0.84025 0.94604 1.91523 1.96288 1.47270 1.76043 1.20831 0.97054 0.97305 1.04242 1.20319 0.87145 0.94389 0.99481 1.98389 1.23544 1.84194 1.96355 1.21229 0.89226 1.02200 1.01885 1.23284 1.02933 0.74832 0.99920 0.91898 0.76814 0.90537 0.90260 0.92759 0.92216 0.75456 0.83881 0.83777 0.82504 0.89319 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.99 10.69 55.43 0.59 -22.40 16 2 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 3 Si 0.90 19.76 29.54 -169.99 -5.02 14.74 16 4 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 7 C -0.54 -13.41 8.27 -34.44 -0.28 -13.69 16 8 H 0.07 1.64 7.79 -52.49 -0.41 1.23 16 9 C 0.25 5.67 0.87 -89.62 -0.08 5.59 16 10 O -0.58 -14.04 13.16 -35.23 -0.46 -14.51 16 11 C -0.12 -2.09 6.13 -24.89 -0.15 -2.24 16 12 C 0.10 1.54 6.16 -3.06 -0.02 1.52 16 13 N -0.62 -11.71 3.33 -176.24 -0.59 -12.29 16 14 C 0.71 13.22 8.23 -86.92 -0.71 12.51 16 15 O -0.57 -12.62 14.29 5.29 0.08 -12.55 16 16 N -0.69 -9.52 5.30 -14.23 -0.08 -9.60 16 17 C 0.23 3.01 6.28 -83.70 -0.53 2.49 16 18 C -0.19 -2.07 9.94 -39.32 -0.39 -2.46 16 19 C 0.13 1.47 7.30 -39.45 -0.29 1.18 16 20 F -0.13 -1.44 17.27 2.25 0.04 -1.40 16 21 C -0.17 -1.91 9.81 -39.44 -0.39 -2.29 16 22 C 0.01 0.18 6.32 -39.53 -0.25 -0.07 16 23 Cl -0.05 -0.65 28.95 -51.86 -1.50 -2.15 16 24 C -0.12 -1.80 8.44 -39.35 -0.33 -2.14 16 25 C 0.11 2.52 5.38 -2.53 -0.01 2.51 16 26 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 27 H 0.38 9.54 7.56 45.56 0.34 9.88 16 28 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 29 H 0.08 1.36 8.03 -51.93 -0.42 0.94 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.41 4.37 7.81 -40.82 -0.32 4.05 16 33 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.16 2.67 6.41 -52.49 -0.34 2.33 16 36 H 0.09 2.28 7.33 -51.93 -0.38 1.90 16 37 H 0.06 1.44 8.03 -51.93 -0.42 1.03 16 LS Contribution 334.05 15.07 5.03 5.03 Total: -1.00 -27.86 334.05 -8.62 -36.48 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -3.18 Total: 14.03 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -3.53 Total: 4.61 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: -0.07 Total: -44.29 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.39 Total: -27.06 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.86 -8.62 -36.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364313866.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.720 kcal (2) G-P(sol) polarization free energy of solvation -27.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds