Wall clock time and date at job start Tue Mar 31 2020 15:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00146 * 2 1 4 4 H 1.48504 * 109.46893 * 270.00603 * 3 2 1 5 5 H 1.48499 * 109.47257 * 30.00285 * 3 2 1 6 6 H 1.48495 * 109.47109 * 150.00652 * 3 2 1 7 7 C 1.37880 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00343 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99701 * 359.97438 * 7 2 1 10 10 O 1.42897 * 110.88905 * 62.42887 * 9 7 2 11 11 C 1.55158 * 111.03523 * 186.33212 * 9 7 2 12 12 C 1.54340 * 103.02005 * 153.39305 * 11 9 7 13 13 N 1.47015 * 107.26660 * 338.14039 * 12 11 9 14 14 C 1.34775 * 125.65170 * 178.84902 * 13 12 11 15 15 O 1.21587 * 120.00259 * 179.69326 * 14 13 12 16 16 N 1.34779 * 119.99415 * 359.69074 * 14 13 12 17 17 C 1.39947 * 119.99674 * 185.31756 * 16 14 13 18 18 C 1.38859 * 120.05001 * 213.54904 * 17 16 14 19 19 C 1.38316 * 119.93007 * 180.29790 * 18 17 16 20 20 F 1.35106 * 119.98570 * 179.72554 * 19 18 17 21 21 C 1.38512 * 120.03380 * 359.70870 * 19 18 17 22 22 C 1.38344 * 120.09978 * 0.02562 * 21 19 18 23 23 Cl 1.73593 * 119.96619 * 180.02562 * 22 21 19 24 24 C 1.38266 * 120.06939 * 0.02562 * 22 21 19 25 25 C 1.47425 * 108.70229 * 358.58560 * 13 12 11 26 26 H 0.97006 * 119.99912 * 359.97438 * 1 2 3 27 27 H 0.96705 * 114.00071 * 297.56926 * 10 9 7 28 28 H 1.09003 * 110.72038 * 271.95220 * 11 9 7 29 29 H 1.08998 * 110.72199 * 35.22706 * 11 9 7 30 30 H 1.08996 * 109.98698 * 218.66004 * 12 11 9 31 31 H 1.09000 * 109.77546 * 97.49845 * 12 11 9 32 32 H 0.96993 * 120.00651 * 5.32220 * 16 14 13 33 33 H 1.07996 * 120.03273 * 0.02562 * 18 17 16 34 34 H 1.08001 * 119.95126 * 180.02562 * 21 19 18 35 35 H 1.07992 * 120.01955 * 179.97438 * 24 22 21 36 36 H 1.09003 * 110.36937 * 143.19548 * 25 13 12 37 37 H 1.08997 * 110.36705 * 265.40512 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.4606 -2.6311 -1.1837 11 6 2.2191 -3.7012 0.1585 12 6 1.3291 -4.7805 0.8106 13 7 0.2064 -4.0871 1.4589 14 6 -0.8064 -4.6805 2.1210 15 8 -1.6823 -4.0042 2.6249 16 7 -0.8483 -6.0236 2.2246 17 6 -1.9547 -6.6457 2.8141 18 6 -1.7875 -7.8139 3.5459 19 6 -2.8835 -8.4300 4.1223 20 9 -2.7229 -9.5696 4.8300 21 6 -4.1458 -7.8790 3.9747 22 6 -4.3131 -6.7123 3.2504 23 17 -5.8965 -6.0244 3.0681 24 6 -3.2205 -6.0934 2.6716 25 6 0.3754 -2.6348 1.2702 26 1 -0.4850 0.8401 0.0004 27 1 -0.2254 -1.9558 -1.2758 28 1 2.5836 -4.0340 -0.8133 29 1 3.0497 -3.4431 0.8154 30 1 1.9010 -5.3357 1.5540 31 1 0.9532 -5.4600 0.0457 32 1 -0.1118 -6.5591 1.8907 33 1 -0.8033 -8.2432 3.6613 34 1 -5.0006 -8.3610 4.4256 35 1 -3.3521 -5.1829 2.1061 36 1 -0.5922 -2.1570 1.1168 37 1 0.8818 -2.1968 2.1303 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364313866.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:32 Heat of formation + Delta-G solvation = -113.345908 kcal Electronic energy + Delta-G solvation = -25322.185501 eV Core-core repulsion = 21232.283911 eV Total energy + Delta-G solvation = -4089.901590 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.02233 -41.89921 -40.20451 -38.96159 -37.62122 -36.13962 -35.69175 -34.22469 -32.08909 -31.61291 -30.52398 -29.48725 -27.05208 -24.81304 -24.09560 -23.49794 -21.49934 -21.14811 -19.71192 -19.09679 -18.84034 -17.62824 -17.55982 -17.18369 -16.88689 -16.72427 -16.61466 -16.25855 -16.04320 -15.56860 -15.19152 -14.80601 -14.64001 -14.46634 -14.32735 -13.82807 -13.52531 -13.47666 -13.34139 -12.84168 -12.82823 -12.66432 -12.52685 -12.33140 -12.22983 -12.14763 -12.08435 -11.45945 -11.30757 -11.18713 -10.66143 -10.32203 -9.85632 -9.67619 -9.24778 -8.24379 -6.41170 -0.15632 -0.07313 0.88561 1.37456 1.44328 1.46248 1.54390 1.87682 2.38235 2.41341 2.81244 3.02318 3.14199 3.77937 3.79718 3.89962 3.90778 4.03353 4.06915 4.17349 4.31744 4.40476 4.62428 4.75388 4.78860 4.95186 5.00912 5.07212 5.09784 5.19385 5.24742 5.37490 5.46958 5.67098 5.76542 5.95315 6.09673 6.65632 6.84586 7.27846 7.34230 7.35891 8.80516 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.019574 B = 0.002953 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.137080 B = 9480.938998 C =10427.665601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.027 3.973 3 Si 0.961 3.039 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.555 4.555 8 H 0.070 0.930 9 C 0.231 3.769 10 O -0.587 6.587 11 C -0.111 4.111 12 C 0.100 3.900 13 N -0.624 5.624 14 C 0.711 3.289 15 O -0.617 6.617 16 N -0.667 5.667 17 C 0.206 3.794 18 C -0.167 4.167 19 C 0.136 3.864 20 F -0.126 7.126 21 C -0.161 4.161 22 C 0.007 3.993 23 Cl -0.054 7.054 24 C -0.144 4.144 25 C 0.128 3.872 26 H 0.268 0.732 27 H 0.373 0.627 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.427 0.573 33 H 0.175 0.825 34 H 0.167 0.833 35 H 0.124 0.876 36 H 0.046 0.954 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.608 -17.971 6.003 19.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.174 4.174 3 Si 0.787 3.213 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.593 4.593 8 H 0.088 0.912 9 C 0.191 3.809 10 O -0.394 6.394 11 C -0.148 4.148 12 C -0.021 4.021 13 N -0.359 5.359 14 C 0.414 3.586 15 O -0.497 6.497 16 N -0.316 5.316 17 C 0.109 3.891 18 C -0.189 4.189 19 C 0.116 3.884 20 F -0.105 7.105 21 C -0.181 4.181 22 C -0.021 4.021 23 Cl -0.025 7.025 24 C -0.165 4.165 25 C 0.005 3.995 26 H 0.078 0.922 27 H 0.221 0.779 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.097 0.903 32 H 0.267 0.733 33 H 0.192 0.808 34 H 0.185 0.815 35 H 0.142 0.858 36 H 0.065 0.935 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.091 -17.847 6.253 19.161 hybrid contribution -0.102 1.666 -0.059 1.671 sum -3.193 -16.180 6.194 17.617 Atomic orbital electron populations 1.69832 1.07127 1.28349 1.50040 1.25801 0.95703 1.02755 0.93132 0.85500 0.78788 0.78834 0.78191 1.20176 1.21353 1.18856 1.21799 0.93991 0.91181 1.52373 0.91220 1.19874 0.87205 0.93228 0.80592 1.86099 1.51415 1.56761 1.45148 1.22600 0.97194 0.93608 1.01418 1.22264 0.87059 0.95615 0.97195 1.47906 1.24284 1.09054 1.54696 1.15617 0.81760 0.81904 0.79367 1.90916 1.40733 1.64037 1.53997 1.42380 1.21793 1.04668 1.62750 1.17023 0.85667 0.92546 0.93822 1.20990 1.00878 0.97160 0.99871 1.16939 0.93059 0.84057 0.94370 1.91550 1.96235 1.46874 1.75831 1.21055 0.98096 0.96191 1.02791 1.20328 0.86742 0.95019 0.99987 1.98385 1.23361 1.84380 1.96407 1.21084 0.90853 1.01733 1.02880 1.22740 1.00358 0.77095 0.99310 0.92227 0.77879 0.89512 0.89150 0.88353 0.90323 0.73300 0.80778 0.81523 0.85779 0.93510 0.93861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.97 10.69 21.45 0.23 -48.74 16 2 C 0.03 1.39 5.29 84.66 0.45 1.84 16 3 Si 0.96 40.93 29.54 68.60 2.03 42.95 16 4 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.29 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.56 -27.81 8.27 25.60 0.21 -27.60 16 8 H 0.07 3.37 7.79 -2.91 -0.02 3.35 16 9 C 0.23 10.60 0.87 -10.15 -0.01 10.59 16 10 O -0.59 -28.85 13.16 -148.98 -1.96 -30.81 16 11 C -0.11 -3.79 6.13 31.79 0.19 -3.60 16 12 C 0.10 2.83 6.16 86.74 0.53 3.36 16 13 N -0.62 -23.36 3.33 -829.75 -2.76 -26.12 16 14 C 0.71 26.37 8.23 179.05 1.47 27.85 16 15 O -0.62 -28.33 14.29 -3.99 -0.06 -28.38 16 16 N -0.67 -17.34 5.30 -317.20 -1.68 -19.02 16 17 C 0.21 5.21 6.28 38.14 0.24 5.45 16 18 C -0.17 -3.13 9.94 22.44 0.22 -2.90 16 19 C 0.14 2.56 7.30 22.35 0.16 2.72 16 20 F -0.13 -2.27 17.27 44.97 0.78 -1.49 16 21 C -0.16 -3.16 9.81 22.36 0.22 -2.94 16 22 C 0.01 0.17 6.32 22.30 0.14 0.31 16 23 Cl -0.05 -1.31 28.95 -2.72 -0.08 -1.39 16 24 C -0.14 -4.22 8.44 22.42 0.19 -4.03 16 25 C 0.13 5.99 5.38 86.86 0.47 6.46 16 26 H 0.27 13.90 8.31 -92.70 -0.77 13.13 16 27 H 0.37 19.47 7.56 -74.05 -0.56 18.91 16 28 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 29 H 0.09 2.88 8.03 -2.39 -0.02 2.86 16 30 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.43 7.69 7.81 -92.71 -0.72 6.97 16 33 H 0.17 2.15 8.06 -2.91 -0.02 2.12 16 34 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 35 H 0.12 4.50 6.41 -2.91 -0.02 4.48 16 36 H 0.05 2.55 7.33 -2.39 -0.02 2.53 16 37 H 0.04 2.12 8.03 -2.39 -0.02 2.10 16 Total: -1.00 -63.37 334.05 0.85 -62.52 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: -0.14 Total: 32.97 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: 4.49 Total: 17.51 kcal Atomic # 7 Polarization: -89.67 SS G_CDS: -4.21 Total: -93.88 kcal Atomic # 8 Polarization: -57.18 SS G_CDS: -2.02 Total: -59.19 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.78 Total: -1.49 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.95 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.39 kcal Total: -63.37 0.85 -62.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364313866.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.830 kcal (2) G-P(sol) polarization free energy of solvation -63.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds