Wall clock time and date at job start Tue Mar 31 2020 15:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99946 * 2 1 4 4 H 1.48501 * 109.46820 * 274.87601 * 3 2 1 5 5 H 1.48498 * 109.47394 * 34.87144 * 3 2 1 6 6 H 1.48495 * 109.47311 * 154.87610 * 3 2 1 7 7 C 1.37871 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00138 * 355.25860 * 7 2 1 9 9 C 1.50699 * 120.00211 * 175.24901 * 7 2 1 10 10 O 1.42903 * 110.63799 * 62.38195 * 9 7 2 11 11 C 1.55157 * 110.87492 * 299.13230 * 9 7 2 12 12 C 1.55122 * 101.48695 * 205.89456 * 11 9 7 13 13 N 1.47420 * 104.72425 * 37.29585 * 12 11 9 14 14 C 1.34775 * 125.65134 * 155.81402 * 13 12 11 15 15 O 1.21593 * 120.00296 * 179.41828 * 14 13 12 16 16 N 1.34775 * 119.99823 * 359.69677 * 14 13 12 17 17 C 1.39941 * 120.00031 * 175.11685 * 16 14 13 18 18 C 1.38856 * 120.05100 * 214.82209 * 17 16 14 19 19 C 1.38318 * 119.93277 * 179.76557 * 18 17 16 20 20 F 1.35107 * 119.98451 * 180.24985 * 19 18 17 21 21 C 1.38520 * 120.03252 * 0.50939 * 19 18 17 22 22 C 1.38334 * 120.09648 * 359.74188 * 21 19 18 23 23 Cl 1.73605 * 119.96358 * 180.02562 * 22 21 19 24 24 C 1.38267 * 120.07227 * 359.97438 * 22 21 19 25 25 C 1.47023 * 108.70394 * 335.55405 * 13 12 11 26 26 H 0.96998 * 120.00178 * 0.02562 * 1 2 3 27 27 H 0.96699 * 114.00260 * 61.68916 * 10 9 7 28 28 H 1.08996 * 111.00322 * 324.14128 * 11 9 7 29 29 H 1.09002 * 110.99998 * 87.98823 * 11 9 7 30 30 H 1.09006 * 110.49775 * 278.45659 * 12 11 9 31 31 H 1.08998 * 110.34537 * 156.05743 * 12 11 9 32 32 H 0.97002 * 120.00133 * 355.11006 * 16 14 13 33 33 H 1.08001 * 120.03420 * 0.02562 * 18 17 16 34 34 H 1.07993 * 119.94670 * 179.76491 * 21 19 18 35 35 H 1.07999 * 120.01443 * 180.02562 * 24 22 21 36 36 H 1.08994 * 109.88581 * 120.70335 * 25 13 12 37 37 H 1.09006 * 109.88471 * 241.71786 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3935 2.1059 -1.3950 5 1 1.5019 2.6208 0.8005 6 1 3.5944 1.4127 0.5944 7 6 2.0045 -1.1940 0.0005 8 1 1.4673 -2.1277 0.0783 9 6 3.5076 -1.1963 -0.1076 10 8 4.0941 -0.5281 1.0112 11 6 3.9672 -0.5450 -1.4387 12 6 5.3417 -1.2294 -1.6591 13 7 5.1488 -2.6154 -1.1952 14 6 5.8693 -3.6836 -1.5906 15 8 5.6280 -4.7834 -1.1316 16 7 6.8610 -3.5317 -2.4905 17 6 7.6753 -4.6197 -2.8247 18 6 9.0195 -4.4204 -3.1102 19 6 9.8232 -5.4981 -3.4354 20 9 11.1323 -5.3060 -3.7084 21 6 9.2852 -6.7735 -3.4866 22 6 7.9451 -6.9729 -3.2076 23 17 7.2747 -8.5730 -3.2721 24 6 7.1392 -5.8994 -2.8762 25 6 4.0444 -2.6384 -0.2250 26 1 -0.4850 0.8400 -0.0004 27 1 3.9006 -0.9431 1.8629 28 1 3.2757 -0.7800 -2.2478 29 1 4.0830 0.5330 -1.3266 30 1 6.1131 -0.7355 -1.0682 31 1 5.6062 -1.2167 -2.7164 32 1 7.0103 -2.6683 -2.9067 33 1 9.4380 -3.4254 -3.0742 34 1 9.9132 -7.6135 -3.7444 35 1 6.0932 -6.0561 -2.6581 36 1 3.2541 -3.3005 -0.5785 37 1 4.4089 -2.9807 0.7436 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364313867.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:34 Heat of formation + Delta-G solvation = -101.645750 kcal Electronic energy + Delta-G solvation = -25223.929883 eV Core-core repulsion = 21134.535650 eV Total energy + Delta-G solvation = -4089.394233 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.02001 -41.97346 -40.32405 -39.12401 -37.62207 -36.25869 -35.75515 -34.49845 -32.13763 -31.60842 -30.60742 -29.88946 -27.16587 -24.64449 -24.07615 -23.63622 -21.66775 -21.19153 -19.91590 -19.32610 -18.94617 -17.60480 -17.56137 -17.09563 -17.00254 -16.76700 -16.68788 -16.39784 -16.11883 -15.56587 -15.15931 -15.01512 -14.74344 -14.49417 -14.38201 -14.12503 -13.98246 -13.50771 -13.24457 -13.20001 -12.86802 -12.80486 -12.63624 -12.35997 -12.21128 -12.13763 -11.83348 -11.43930 -11.25688 -10.90019 -10.78234 -10.26095 -9.85099 -9.82074 -9.31758 -8.34453 -6.50911 -0.15908 -0.06754 0.89130 1.31070 1.40631 1.50725 1.76477 1.83225 2.39004 2.42851 2.70252 3.01910 3.14821 3.55348 3.71557 3.81523 3.90194 3.91955 4.01893 4.05029 4.25184 4.36837 4.43256 4.54561 4.78968 4.80531 4.90429 4.97878 5.00889 5.07825 5.11530 5.17775 5.42097 5.54777 5.66945 5.86953 6.08090 6.60609 6.73218 7.13271 7.27029 7.31329 8.79719 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.023224 B = 0.002811 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.361107 B = 9959.875599 C =10823.794107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.034 3.966 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.311 1.311 6 H -0.190 1.190 7 C -0.552 4.552 8 H 0.033 0.967 9 C 0.218 3.782 10 O -0.569 6.569 11 C -0.125 4.125 12 C 0.105 3.895 13 N -0.622 5.622 14 C 0.717 3.283 15 O -0.611 6.611 16 N -0.667 5.667 17 C 0.203 3.797 18 C -0.166 4.166 19 C 0.133 3.867 20 F -0.128 7.128 21 C -0.160 4.160 22 C 0.005 3.995 23 Cl -0.054 7.054 24 C -0.141 4.141 25 C 0.122 3.878 26 H 0.267 0.733 27 H 0.376 0.624 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.428 0.572 33 H 0.173 0.827 34 H 0.165 0.835 35 H 0.134 0.866 36 H 0.047 0.953 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.958 -6.518 -9.208 24.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.166 4.166 3 Si 0.756 3.244 4 H -0.200 1.200 5 H -0.240 1.240 6 H -0.112 1.112 7 C -0.590 4.590 8 H 0.052 0.948 9 C 0.178 3.822 10 O -0.377 6.377 11 C -0.163 4.163 12 C -0.017 4.017 13 N -0.357 5.357 14 C 0.420 3.580 15 O -0.491 6.491 16 N -0.316 5.316 17 C 0.107 3.893 18 C -0.187 4.187 19 C 0.112 3.888 20 F -0.107 7.107 21 C -0.180 4.180 22 C -0.023 4.023 23 Cl -0.025 7.025 24 C -0.162 4.162 25 C -0.002 4.002 26 H 0.076 0.924 27 H 0.225 0.775 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.124 0.876 32 H 0.268 0.732 33 H 0.191 0.809 34 H 0.183 0.817 35 H 0.152 0.848 36 H 0.066 0.934 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 21.841 -6.955 -9.336 24.750 hybrid contribution -0.931 0.369 0.445 1.095 sum 20.910 -6.586 -8.892 23.657 Atomic orbital electron populations 1.70082 1.08803 1.28532 1.50353 1.25829 0.95116 1.03550 0.92140 0.86243 0.82635 0.77049 0.78458 1.20028 1.23973 1.11201 1.21420 0.91085 0.93401 1.53102 0.94842 1.19800 0.89693 0.86985 0.85754 1.86511 1.77014 1.56634 1.17524 1.23008 0.96134 1.00253 0.96927 1.22588 0.97910 0.79959 1.01218 1.47611 1.35102 1.07499 1.45503 1.15475 0.79596 0.83278 0.79690 1.90914 1.71642 1.25036 1.61459 1.42331 1.32331 1.13507 1.43471 1.16979 0.89122 0.86633 0.96597 1.21017 0.90744 1.01215 1.05770 1.16974 0.78415 0.93014 1.00348 1.91551 1.32129 1.95823 1.91155 1.21074 0.94086 0.97707 1.05177 1.20362 0.93177 0.86738 1.02028 1.98390 1.85549 1.21867 1.96719 1.21241 1.01655 0.91310 1.02006 1.22403 0.87030 0.99375 0.91348 0.92381 0.77515 0.90280 0.89992 0.89176 0.87579 0.73210 0.80916 0.81731 0.84774 0.93420 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.98 13.96 21.44 0.30 -55.68 16 2 C 0.03 1.82 5.44 84.65 0.46 2.28 16 3 Si 0.93 40.59 24.27 68.60 1.66 42.26 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.31 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.19 -7.54 5.12 99.48 0.51 -7.03 16 7 C -0.55 -28.82 8.81 25.60 0.23 -28.60 16 8 H 0.03 1.99 7.83 -2.91 -0.02 1.97 16 9 C 0.22 8.82 0.67 -10.35 -0.01 8.81 16 10 O -0.57 -21.38 9.92 -148.98 -1.48 -22.86 16 11 C -0.13 -4.27 5.05 32.06 0.16 -4.11 16 12 C 0.10 2.60 6.62 86.93 0.58 3.18 16 13 N -0.62 -19.40 3.32 -829.32 -2.76 -22.16 16 14 C 0.72 22.20 8.33 179.06 1.49 23.69 16 15 O -0.61 -23.65 14.10 -4.01 -0.06 -23.70 16 16 N -0.67 -14.33 5.29 -317.21 -1.68 -16.01 16 17 C 0.20 4.36 6.30 38.14 0.24 4.60 16 18 C -0.17 -2.65 9.94 22.44 0.22 -2.43 16 19 C 0.13 2.21 7.30 22.36 0.16 2.38 16 20 F -0.13 -2.10 17.27 44.97 0.78 -1.33 16 21 C -0.16 -2.76 9.81 22.36 0.22 -2.54 16 22 C 0.00 0.10 6.32 22.30 0.14 0.24 16 23 Cl -0.05 -1.14 28.95 -2.72 -0.08 -1.22 16 24 C -0.14 -3.54 8.48 22.42 0.19 -3.35 16 25 C 0.12 4.67 6.21 86.73 0.54 5.20 16 26 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 27 H 0.38 12.47 9.08 -74.06 -0.67 11.80 16 28 H 0.08 2.86 8.04 -2.39 -0.02 2.84 16 29 H 0.08 2.73 5.35 -2.39 -0.01 2.71 16 30 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 31 H 0.11 1.76 7.22 -2.39 -0.02 1.74 16 32 H 0.43 6.00 7.27 -92.71 -0.67 5.33 16 33 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 34 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 35 H 0.13 4.15 6.22 -2.91 -0.02 4.14 16 36 H 0.05 2.07 7.67 -2.39 -0.02 2.05 16 37 H 0.06 2.28 8.06 -2.38 -0.02 2.26 16 Total: -1.00 -68.58 324.99 0.93 -67.65 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: -0.39 Total: 23.70 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 4.62 Total: 9.34 kcal Atomic # 7 Polarization: -89.70 SS G_CDS: -4.14 Total: -93.84 kcal Atomic # 8 Polarization: -45.03 SS G_CDS: -1.53 Total: -46.56 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.78 Total: -1.33 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 1.66 Total: 42.26 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.08 Total: -1.22 kcal Total: -68.58 0.93 -67.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364313867.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.996 kcal (2) G-P(sol) polarization free energy of solvation -68.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds