Wall clock time and date at job start Tue Mar 31 2020 14:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 120.00159 * 2 1 4 4 H 1.48497 * 109.47118 * 270.00200 * 3 2 1 5 5 H 1.48499 * 109.46858 * 30.00076 * 3 2 1 6 6 H 1.48497 * 109.46935 * 150.00170 * 3 2 1 7 7 C 1.37881 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00148 * 173.00176 * 7 2 1 9 9 C 1.50701 * 119.99569 * 353.00027 * 7 2 1 10 10 C 1.53011 * 115.54821 * 84.78779 * 9 7 2 11 11 S 1.81395 * 109.46885 * 39.91226 * 10 9 7 12 12 O 1.42100 * 110.54547 * 62.31447 * 11 10 9 13 13 O 1.42095 * 110.54410 * 285.55605 * 11 10 9 14 14 N 1.65611 * 104.44532 * 173.93514 * 11 10 9 15 15 C 1.47064 * 121.08052 * 89.99874 * 14 11 10 16 16 C 1.53048 * 109.11219 * 115.42727 * 15 14 11 17 17 C 1.52102 * 109.12328 * 46.93533 * 16 15 14 18 18 N 1.32602 * 124.02954 * 161.08407 * 17 16 15 19 19 C 1.28653 * 117.94046 * 179.27688 * 18 17 16 20 20 S 1.70919 * 110.13222 * 0.12350 * 19 18 17 21 21 C 1.34611 * 122.96481 * 340.71403 * 17 16 15 22 22 C 1.47311 * 121.07863 * 270.02402 * 14 11 10 23 23 C 1.52994 * 117.51654 * 230.48404 * 9 7 2 24 24 C 1.52994 * 117.50215 * 299.11534 * 9 7 2 25 25 H 0.97001 * 120.00016 * 5.02465 * 1 2 3 26 26 H 1.08997 * 109.46686 * 279.91156 * 10 9 7 27 27 H 1.08994 * 109.46772 * 159.91699 * 10 9 7 28 28 H 1.08998 * 109.53374 * 235.31768 * 15 14 11 29 29 H 1.09000 * 109.53157 * 355.53929 * 15 14 11 30 30 H 1.09006 * 109.52927 * 166.82476 * 16 15 14 31 31 H 1.08996 * 109.53497 * 287.03972 * 16 15 14 32 32 H 1.08000 * 124.93416 * 180.12338 * 19 18 17 33 33 H 1.09000 * 109.86507 * 342.83498 * 22 14 11 34 34 H 1.09000 * 109.86292 * 103.87066 * 22 14 11 35 35 H 1.08999 * 117.49758 * 214.97074 * 23 9 7 36 36 H 1.08997 * 117.50525 * 359.97438 * 23 9 7 37 37 H 1.09001 * 117.49883 * 359.97438 * 24 9 7 38 38 H 1.09005 * 117.50184 * 144.99775 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0784 -1.1975 -0.1145 9 6 1.2594 -2.4943 0.1579 10 6 0.6798 -3.0839 -1.1296 11 16 1.8645 -2.8585 -2.4846 12 8 3.0717 -3.5571 -2.2130 13 8 1.8824 -1.5031 -2.9110 14 7 1.1960 -3.6786 -3.7586 15 6 0.2840 -3.0089 -4.6981 16 6 0.9292 -2.9759 -6.0855 17 6 1.4833 -4.3546 -6.4102 18 7 1.7747 -4.7674 -7.6362 19 6 2.2514 -5.9542 -7.7753 20 16 2.3825 -6.7179 -6.2519 21 6 1.7353 -5.2831 -5.4687 22 6 1.4951 -5.1028 -3.9873 23 6 1.7653 -3.4742 1.2185 24 6 0.4655 -2.7008 1.4494 25 1 -0.4850 0.8368 -0.0736 26 1 -0.2529 -2.5758 -1.3741 27 1 0.4878 -4.1474 -0.9879 28 1 -0.6566 -3.5575 -4.7466 29 1 0.0957 -1.9900 -4.3594 30 1 0.1813 -2.6994 -6.8287 31 1 1.7392 -2.2466 -6.0934 32 1 2.5285 -6.4028 -8.7179 33 1 2.3874 -5.3879 -3.4301 34 1 0.6494 -5.7141 -3.6722 35 1 1.6851 -4.5389 0.9990 36 1 2.6375 -3.1788 1.8016 37 1 0.4825 -1.8963 2.1847 38 1 -0.4697 -3.2567 1.3819 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365381133.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:56 Heat of formation + Delta-G solvation = 5.300296 kcal Electronic energy + Delta-G solvation = -24303.086858 eV Core-core repulsion = 20786.587036 eV Total energy + Delta-G solvation = -3516.499822 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.11791 -36.86574 -36.71328 -36.25987 -34.96610 -32.07853 -31.42630 -30.63084 -28.21118 -25.78881 -25.40426 -24.40124 -22.63795 -21.23171 -19.81623 -19.21935 -18.39069 -17.72894 -16.69693 -16.41661 -16.20595 -15.43189 -15.03352 -14.88666 -14.63575 -14.17796 -13.95192 -13.89602 -13.70403 -13.15646 -12.95213 -12.76452 -12.32339 -12.22644 -11.85076 -11.75481 -11.28854 -11.17435 -11.04788 -10.98729 -10.86157 -10.78429 -10.53587 -10.39000 -10.15060 -9.80557 -9.72857 -9.39542 -9.05019 -8.86473 -8.74892 -8.55853 -8.14116 -6.18450 -4.33307 0.60769 0.95084 1.30436 1.61885 2.67850 3.30618 3.34506 3.39294 3.42224 4.01243 4.38227 4.58475 4.67519 4.83500 4.91631 4.99568 5.11103 5.11742 5.20124 5.23901 5.34345 5.47729 5.63078 5.72454 5.78520 5.87322 5.95111 6.17312 6.20811 6.28342 6.33710 6.58127 6.65719 6.70883 6.93159 7.15087 7.36671 7.61154 7.76334 8.15696 8.75614 9.44186 10.89076 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.021536 B = 0.004096 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.852019 B = 6834.042815 C = 7484.131636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.099 3.901 3 Si 0.889 3.111 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.544 4.544 8 H 0.069 0.931 9 C 0.049 3.951 10 C -0.557 4.557 11 S 2.622 3.378 12 O -0.970 6.970 13 O -0.933 6.933 14 N -1.014 6.014 15 C 0.122 3.878 16 C -0.055 4.055 17 C 0.072 3.928 18 N -0.470 5.470 19 C 0.018 3.982 20 S 0.122 5.878 21 C -0.230 4.230 22 C 0.196 3.804 23 C -0.204 4.204 24 C -0.143 4.143 25 H 0.265 0.735 26 H 0.129 0.871 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.199 0.801 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.446 -12.633 -11.205 16.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.109 4.109 3 Si 0.715 3.285 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.581 4.581 8 H 0.087 0.913 9 C 0.047 3.953 10 C -0.690 4.690 11 S 2.720 3.280 12 O -0.961 6.961 13 O -0.923 6.923 14 N -0.849 5.849 15 C -0.004 4.004 16 C -0.096 4.096 17 C -0.058 4.058 18 N -0.183 5.183 19 C -0.280 4.280 20 S 0.375 5.625 21 C -0.352 4.352 22 C 0.068 3.932 23 C -0.241 4.241 24 C -0.182 4.182 25 H 0.075 0.925 26 H 0.147 0.853 27 H 0.114 0.886 28 H 0.091 0.909 29 H 0.126 0.874 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.216 0.784 33 H 0.128 0.872 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.510 -12.719 -11.392 17.082 hybrid contribution -0.590 1.242 0.173 1.386 sum -1.100 -11.477 -11.219 16.087 Atomic orbital electron populations 1.69946 1.06189 1.27519 1.46413 1.24886 0.94710 0.99267 0.92012 0.86611 0.80157 0.82740 0.78965 1.19541 1.20952 1.19412 1.20585 0.93658 0.88765 1.55134 0.91315 1.18187 0.98821 0.94051 0.84237 1.30007 1.16461 1.06354 1.16157 1.04873 0.75605 0.73533 0.73979 1.93462 1.42415 1.75010 1.85173 1.93534 1.86123 1.32975 1.79680 1.58585 1.63084 1.19191 1.44043 1.21361 0.91901 0.99251 0.87914 1.20750 1.01213 0.90243 0.97428 1.20845 1.01440 0.97995 0.85567 1.65890 1.13510 1.14201 1.24683 1.28139 1.03725 0.93811 1.02375 1.83835 1.59515 1.17328 1.01839 1.26295 1.09607 0.97461 1.01813 1.19860 1.02140 0.82804 0.88388 1.23127 0.98733 0.95555 1.06724 1.22532 0.92407 1.01107 1.02191 0.92508 0.85327 0.88574 0.90946 0.87422 0.88843 0.89094 0.78430 0.87156 0.89761 0.91254 0.89661 0.89607 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.54 12.96 55.43 0.72 -22.83 16 2 C 0.10 2.68 5.39 -17.82 -0.10 2.58 16 3 Si 0.89 21.54 29.55 -169.99 -5.02 16.51 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.54 -14.72 6.89 -34.44 -0.24 -14.96 16 8 H 0.07 1.92 7.82 -52.49 -0.41 1.51 16 9 C 0.05 1.18 1.64 -155.66 -0.26 0.92 16 10 C -0.56 -11.34 6.29 37.16 0.23 -11.11 16 11 S 2.62 54.19 4.63 -107.50 -0.50 53.69 16 12 O -0.97 -21.95 16.63 -57.54 -0.96 -22.90 16 13 O -0.93 -22.46 15.87 -57.54 -0.91 -23.37 16 14 N -1.01 -15.99 3.21 -114.34 -0.37 -16.36 16 15 C 0.12 1.66 6.24 -3.71 -0.02 1.64 16 16 C -0.06 -0.74 6.46 -27.16 -0.18 -0.91 16 17 C 0.07 1.02 6.80 -82.85 -0.56 0.46 16 18 N -0.47 -6.35 10.51 -11.16 -0.12 -6.46 16 19 C 0.02 0.19 12.23 51.43 0.63 0.82 16 20 S 0.12 1.24 23.21 -107.50 -2.50 -1.25 16 21 C -0.23 -3.05 6.49 -35.37 -0.23 -3.28 16 22 C 0.20 2.64 6.85 -4.53 -0.03 2.61 16 23 C -0.20 -4.34 9.88 -26.74 -0.26 -4.61 16 24 C -0.14 -3.20 9.50 -26.74 -0.25 -3.46 16 25 H 0.27 6.87 8.32 -40.82 -0.34 6.53 16 26 H 0.13 2.63 8.14 -51.93 -0.42 2.21 16 27 H 0.10 1.60 7.95 -51.93 -0.41 1.19 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.11 1.53 7.09 -51.93 -0.37 1.17 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.20 1.28 8.06 -52.49 -0.42 0.85 16 33 H 0.11 1.53 6.90 -51.93 -0.36 1.17 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 36 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 37 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 341.87 15.07 5.15 5.15 Total: -1.00 -33.22 341.87 -10.68 -43.90 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -4.91 Total: 3.23 kcal Atomic # 6 Polarization: -28.04 SS G_CDS: -1.27 Total: -29.30 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.23 Total: -45.65 kcal Atomic # 8 Polarization: -44.40 SS G_CDS: -1.87 Total: -46.27 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 55.43 SS G_CDS: -2.99 Total: 52.44 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.22 -10.68 -43.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365381133.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.198 kcal (2) G-P(sol) polarization free energy of solvation -33.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds