Wall clock time and date at job start Tue Mar 31 2020 14:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 120.00159 * 2 1 4 4 H 1.48497 * 109.47118 * 270.00200 * 3 2 1 5 5 H 1.48499 * 109.46858 * 30.00076 * 3 2 1 6 6 H 1.48497 * 109.46935 * 150.00170 * 3 2 1 7 7 C 1.37881 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00148 * 173.00176 * 7 2 1 9 9 C 1.50701 * 119.99569 * 353.00027 * 7 2 1 10 10 C 1.53011 * 115.54821 * 84.78779 * 9 7 2 11 11 S 1.81395 * 109.46885 * 39.91226 * 10 9 7 12 12 O 1.42100 * 110.54547 * 62.31447 * 11 10 9 13 13 O 1.42095 * 110.54410 * 285.55605 * 11 10 9 14 14 N 1.65611 * 104.44532 * 173.93514 * 11 10 9 15 15 C 1.47064 * 121.08052 * 89.99874 * 14 11 10 16 16 C 1.53048 * 109.11219 * 115.42727 * 15 14 11 17 17 C 1.52102 * 109.12328 * 46.93533 * 16 15 14 18 18 N 1.32602 * 124.02954 * 161.08407 * 17 16 15 19 19 C 1.28653 * 117.94046 * 179.27688 * 18 17 16 20 20 S 1.70919 * 110.13222 * 0.12350 * 19 18 17 21 21 C 1.34611 * 122.96481 * 340.71403 * 17 16 15 22 22 C 1.47311 * 121.07863 * 270.02402 * 14 11 10 23 23 C 1.52994 * 117.51654 * 230.48404 * 9 7 2 24 24 C 1.52994 * 117.50215 * 299.11534 * 9 7 2 25 25 H 0.97001 * 120.00016 * 5.02465 * 1 2 3 26 26 H 1.08997 * 109.46686 * 279.91156 * 10 9 7 27 27 H 1.08994 * 109.46772 * 159.91699 * 10 9 7 28 28 H 1.08998 * 109.53374 * 235.31768 * 15 14 11 29 29 H 1.09000 * 109.53157 * 355.53929 * 15 14 11 30 30 H 1.09006 * 109.52927 * 166.82476 * 16 15 14 31 31 H 1.08996 * 109.53497 * 287.03972 * 16 15 14 32 32 H 1.08000 * 124.93416 * 180.12338 * 19 18 17 33 33 H 1.09000 * 109.86507 * 342.83498 * 22 14 11 34 34 H 1.09000 * 109.86292 * 103.87066 * 22 14 11 35 35 H 1.08999 * 117.49758 * 214.97074 * 23 9 7 36 36 H 1.08997 * 117.50525 * 359.97438 * 23 9 7 37 37 H 1.09001 * 117.49883 * 359.97438 * 24 9 7 38 38 H 1.09005 * 117.50184 * 144.99775 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0784 -1.1975 -0.1145 9 6 1.2594 -2.4943 0.1579 10 6 0.6798 -3.0839 -1.1296 11 16 1.8645 -2.8585 -2.4846 12 8 3.0717 -3.5571 -2.2130 13 8 1.8824 -1.5031 -2.9110 14 7 1.1960 -3.6786 -3.7586 15 6 0.2840 -3.0089 -4.6981 16 6 0.9292 -2.9759 -6.0855 17 6 1.4833 -4.3546 -6.4102 18 7 1.7747 -4.7674 -7.6362 19 6 2.2514 -5.9542 -7.7753 20 16 2.3825 -6.7179 -6.2519 21 6 1.7353 -5.2831 -5.4687 22 6 1.4951 -5.1028 -3.9873 23 6 1.7653 -3.4742 1.2185 24 6 0.4655 -2.7008 1.4494 25 1 -0.4850 0.8368 -0.0736 26 1 -0.2529 -2.5758 -1.3741 27 1 0.4878 -4.1474 -0.9879 28 1 -0.6566 -3.5575 -4.7466 29 1 0.0957 -1.9900 -4.3594 30 1 0.1813 -2.6994 -6.8287 31 1 1.7392 -2.2466 -6.0934 32 1 2.5285 -6.4028 -8.7179 33 1 2.3874 -5.3879 -3.4301 34 1 0.6494 -5.7141 -3.6722 35 1 1.6851 -4.5389 0.9990 36 1 2.6375 -3.1788 1.8016 37 1 0.4825 -1.8963 2.1847 38 1 -0.4697 -3.2567 1.3819 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365381133.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:55 Heat of formation + Delta-G solvation = -17.589986 kcal Electronic energy + Delta-G solvation = -24304.079455 eV Core-core repulsion = 20786.587036 eV Total energy + Delta-G solvation = -3517.492419 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.05734 -38.53587 -37.96328 -37.89094 -36.67602 -34.09894 -32.48418 -31.64839 -29.85569 -27.53104 -26.63374 -25.40835 -23.66365 -22.94717 -21.45761 -20.61011 -19.32533 -19.20149 -18.28918 -17.86009 -17.40072 -16.94613 -16.57695 -16.25086 -16.14415 -15.55889 -15.35818 -14.99435 -14.88293 -14.77019 -14.02414 -13.92246 -13.81289 -13.70772 -13.39487 -13.07607 -13.04627 -12.91636 -12.83661 -12.62815 -12.42211 -12.29903 -12.08462 -11.95838 -11.84587 -11.55719 -10.87588 -10.65691 -10.52808 -10.34834 -10.08021 -9.84166 -9.64884 -8.23116 -6.40231 -0.56118 -0.25764 0.39941 0.75919 1.35352 1.41417 1.45869 1.74905 1.96326 2.39385 3.06559 3.09505 3.15938 3.30722 3.47046 3.55283 3.92876 3.99104 4.05992 4.19089 4.25003 4.30280 4.38481 4.50565 4.60705 4.61601 4.68679 4.75576 4.86540 4.91855 5.00118 5.13991 5.18944 5.20445 5.40316 5.52552 5.62605 5.68984 6.21136 6.68742 6.73810 7.37548 8.83822 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.021536 B = 0.004096 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.852019 B = 6834.042815 C = 7484.131636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.063 3.937 3 Si 0.922 3.078 4 H -0.280 1.280 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.558 4.558 8 H 0.046 0.954 9 C 0.012 3.988 10 C -0.549 4.549 11 S 2.630 3.370 12 O -0.998 6.998 13 O -0.980 6.980 14 N -1.009 6.009 15 C 0.118 3.882 16 C -0.056 4.056 17 C 0.055 3.945 18 N -0.503 5.503 19 C 0.024 3.976 20 S 0.177 5.823 21 C -0.258 4.258 22 C 0.190 3.810 23 C -0.190 4.190 24 C -0.140 4.140 25 H 0.267 0.733 26 H 0.126 0.874 27 H 0.138 0.862 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.068 0.932 32 H 0.236 0.764 33 H 0.103 0.897 34 H 0.121 0.879 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.216 -15.175 -11.993 19.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.143 4.143 3 Si 0.747 3.253 4 H -0.206 1.206 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.596 4.596 8 H 0.064 0.936 9 C 0.010 3.990 10 C -0.682 4.682 11 S 2.730 3.270 12 O -0.988 6.988 13 O -0.970 6.970 14 N -0.846 5.846 15 C -0.007 4.007 16 C -0.098 4.098 17 C -0.077 4.077 18 N -0.217 5.217 19 C -0.274 4.274 20 S 0.430 5.570 21 C -0.381 4.381 22 C 0.063 3.937 23 C -0.227 4.227 24 C -0.179 4.179 25 H 0.077 0.923 26 H 0.144 0.856 27 H 0.156 0.844 28 H 0.124 0.876 29 H 0.112 0.888 30 H 0.131 0.869 31 H 0.087 0.913 32 H 0.252 0.748 33 H 0.121 0.879 34 H 0.138 0.862 35 H 0.122 0.878 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.264 -15.263 -12.164 19.558 hybrid contribution -0.295 1.904 0.338 1.956 sum -1.559 -13.358 -11.827 17.909 Atomic orbital electron populations 1.69967 1.06539 1.27971 1.47171 1.25372 0.95460 1.01222 0.92218 0.86105 0.79799 0.80968 0.78440 1.20562 1.19283 1.19182 1.20722 0.92925 0.90891 1.55015 0.93613 1.18341 1.00377 0.94047 0.86278 1.29856 1.15546 1.08729 1.14097 1.04246 0.75516 0.72656 0.74597 1.93413 1.44299 1.75186 1.85929 1.93470 1.86888 1.36010 1.80640 1.58094 1.63216 1.20343 1.42974 1.21554 0.92769 0.98995 0.87363 1.20720 1.01068 0.90165 0.97798 1.20921 1.02239 0.98212 0.86290 1.65917 1.15364 1.15807 1.24612 1.28843 1.01516 0.92946 1.04133 1.83627 1.57959 1.14851 1.00529 1.26417 1.10692 0.99310 1.01675 1.20147 1.03379 0.81389 0.88829 1.23213 0.97865 0.96939 1.04644 1.22478 0.93900 1.00967 1.00588 0.92348 0.85595 0.84402 0.87619 0.88776 0.86943 0.91310 0.74826 0.87910 0.86178 0.87822 0.90319 0.91826 0.89324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.28 12.96 21.45 0.28 -48.00 16 2 C 0.06 3.45 5.39 84.66 0.46 3.90 16 3 Si 0.92 44.66 29.55 68.60 2.03 46.68 16 4 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 5 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 7 C -0.56 -30.75 6.89 25.60 0.18 -30.57 16 8 H 0.05 2.65 7.82 -2.91 -0.02 2.63 16 9 C 0.01 0.55 1.64 -52.93 -0.09 0.46 16 10 C -0.55 -21.59 6.29 71.99 0.45 -21.14 16 11 S 2.63 109.04 4.63 -56.49 -0.26 108.78 16 12 O -1.00 -45.41 16.63 -127.65 -2.12 -47.53 16 13 O -0.98 -48.87 15.87 -127.65 -2.03 -50.90 16 14 N -1.01 -30.85 3.21 -515.67 -1.65 -32.51 16 15 C 0.12 3.15 6.24 86.29 0.54 3.68 16 16 C -0.06 -1.49 6.46 30.31 0.20 -1.30 16 17 C 0.05 1.47 6.80 42.06 0.29 1.76 16 18 N -0.50 -12.73 10.51 -189.21 -1.99 -14.72 16 19 C 0.02 0.42 12.23 130.71 1.60 2.02 16 20 S 0.18 3.06 23.21 -56.49 -1.31 1.75 16 21 C -0.26 -6.37 6.49 25.00 0.16 -6.20 16 22 C 0.19 4.70 6.85 85.62 0.59 5.28 16 23 C -0.19 -7.72 9.88 30.59 0.30 -7.42 16 24 C -0.14 -6.08 9.50 30.59 0.29 -5.79 16 25 H 0.27 13.95 8.32 -92.71 -0.77 13.18 16 26 H 0.13 5.02 8.14 -2.39 -0.02 5.00 16 27 H 0.14 4.13 7.95 -2.39 -0.02 4.12 16 28 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.09 2.74 7.09 -2.39 -0.02 2.72 16 30 H 0.11 2.44 8.14 -2.38 -0.02 2.42 16 31 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.24 2.10 8.06 -2.91 -0.02 2.08 16 33 H 0.10 2.69 6.90 -2.39 -0.02 2.67 16 34 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.10 3.48 8.08 -2.39 -0.02 3.46 16 36 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 37 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16 38 H 0.09 3.39 8.14 -2.38 -0.02 3.37 16 Total: -1.00 -73.36 341.87 -1.03 -74.38 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 1.08 Total: 17.38 kcal Atomic # 6 Polarization: -60.27 SS G_CDS: 4.96 Total: -55.31 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -3.36 Total: -95.23 kcal Atomic # 8 Polarization: -94.29 SS G_CDS: -4.15 Total: -98.43 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 16 Polarization: 112.10 SS G_CDS: -1.57 Total: 110.53 kcal Total: -73.36 -1.03 -74.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365381133.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.792 kcal (2) G-P(sol) polarization free energy of solvation -73.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds