Wall clock time and date at job start Tue Mar 31 2020 15:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99581 * 2 1 4 4 H 1.48505 * 109.47090 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47575 * 300.00069 * 3 2 1 6 6 H 1.48498 * 109.47273 * 60.00290 * 3 2 1 7 7 C 1.37877 * 120.00367 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99837 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99887 * 0.26944 * 7 2 1 10 10 O 1.42909 * 110.88449 * 59.02628 * 9 7 2 11 11 C 1.55153 * 111.00469 * 182.90765 * 9 7 2 12 12 C 1.54323 * 102.94242 * 153.57710 * 11 9 7 13 13 N 1.47027 * 107.27009 * 337.80683 * 12 11 9 14 14 C 1.34774 * 125.64268 * 178.99699 * 13 12 11 15 15 O 1.21593 * 119.99521 * 179.97438 * 14 13 12 16 16 N 1.34775 * 120.00639 * 359.97126 * 14 13 12 17 17 C 1.40075 * 120.00181 * 175.54094 * 16 14 13 18 18 C 1.38818 * 120.06985 * 34.64623 * 17 16 14 19 19 C 1.38151 * 119.97984 * 179.76816 * 18 17 16 20 20 C 1.38264 * 120.11725 * 0.50476 * 19 18 17 21 21 C 1.38380 * 120.14209 * 359.75088 * 20 19 18 22 22 Cl 1.73599 * 119.98959 * 179.97438 * 21 20 19 23 23 C 1.38417 * 120.01954 * 359.97438 * 21 20 19 24 24 F 1.35102 * 120.05562 * 179.97438 * 23 21 20 25 25 C 1.47461 * 108.72384 * 358.97619 * 13 12 11 26 26 H 0.97001 * 120.00249 * 359.97438 * 1 2 3 27 27 H 0.96706 * 113.99807 * 300.69946 * 10 9 7 28 28 H 1.09001 * 110.71751 * 271.93812 * 11 9 7 29 29 H 1.09000 * 110.71900 * 35.20779 * 11 9 7 30 30 H 1.08999 * 109.87856 * 97.22423 * 12 11 9 31 31 H 1.08993 * 109.88058 * 218.38697 * 12 11 9 32 32 H 0.97000 * 119.99348 * 355.54485 * 16 14 13 33 33 H 1.08003 * 120.01174 * 0.02562 * 18 17 16 34 34 H 1.07992 * 119.93861 * 180.23145 * 19 18 17 35 35 H 1.07998 * 119.93237 * 179.72243 * 20 19 18 36 36 H 1.08999 * 110.35142 * 265.25393 * 25 13 12 37 37 H 1.09000 * 110.40599 * 142.91325 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0073 10 8 0.4061 -2.5936 -1.1558 11 6 2.2257 -3.7042 0.0668 12 6 1.3645 -4.8054 0.7205 13 7 0.2770 -4.1348 1.4480 14 6 -0.7030 -4.7509 2.1382 15 8 -1.5542 -4.0925 2.7044 16 7 -0.7397 -6.0967 2.2009 17 6 -1.7019 -6.7349 2.9940 18 6 -2.9698 -6.1853 3.1266 19 6 -3.9188 -6.8189 3.9054 20 6 -3.6051 -7.9946 4.5618 21 6 -2.3412 -8.5441 4.4374 22 17 -1.9514 -10.0201 5.2639 23 6 -1.3876 -7.9171 3.6540 24 9 -0.1532 -8.4526 3.5324 25 6 0.4360 -2.6764 1.2980 26 1 -0.4850 0.8400 0.0004 27 1 -0.2526 -1.8883 -1.2185 28 1 2.5435 -4.0050 -0.9315 29 1 3.0866 -3.4661 0.6914 30 1 0.9495 -5.4568 -0.0486 31 1 1.9710 -5.3873 1.4144 32 1 -0.0997 -6.6232 1.6969 33 1 -3.2155 -5.2649 2.6178 34 1 -4.9061 -6.3928 4.0051 35 1 -4.3479 -8.4851 5.1735 36 1 0.9838 -2.2657 2.1461 37 1 -0.5378 -2.1955 1.2054 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365754823.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:24 Heat of formation + Delta-G solvation = -92.951720 kcal Electronic energy + Delta-G solvation = -25555.410101 eV Core-core repulsion = 21466.392870 eV Total energy + Delta-G solvation = -4089.017231 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.08168 -40.49889 -38.94813 -37.53868 -36.68780 -34.64419 -34.34543 -32.25173 -30.70236 -30.51299 -29.27187 -27.85569 -25.27758 -23.57871 -22.93774 -22.29821 -19.80333 -19.74329 -18.54033 -17.65360 -17.22495 -17.13440 -16.55192 -15.91159 -15.43312 -15.34122 -15.05568 -14.64455 -14.55882 -14.35567 -13.78106 -13.36482 -13.16747 -13.11899 -12.91248 -12.48183 -12.26181 -12.02312 -11.77577 -11.70024 -11.53828 -11.25075 -11.10834 -10.89770 -10.70321 -10.51828 -10.42167 -10.24747 -9.79189 -9.47056 -8.87360 -8.76104 -8.50174 -8.36518 -7.84812 -6.34856 -4.44366 0.81653 0.88841 1.73806 2.72771 3.16293 3.17222 3.25608 3.28656 3.54751 3.86830 4.11218 4.23269 4.61162 4.68356 4.91971 5.05566 5.16333 5.28220 5.52399 5.54824 5.65674 5.69739 5.90157 5.93451 6.03123 6.12403 6.26574 6.40345 6.59976 6.72887 6.75270 6.76517 7.05704 7.21135 7.35786 7.68034 7.93700 8.19564 8.59529 8.75940 9.24558 9.34191 10.72453 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.028106 B = 0.002773 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.003934 B =10095.753624 C =10608.169264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.537 4.537 8 H 0.068 0.932 9 C 0.249 3.751 10 O -0.583 6.583 11 C -0.115 4.115 12 C 0.099 3.901 13 N -0.618 5.618 14 C 0.717 3.283 15 O -0.577 6.577 16 N -0.686 5.686 17 C 0.162 3.838 18 C -0.091 4.091 19 C -0.096 4.096 20 C -0.109 4.109 21 C -0.055 4.055 22 Cl -0.054 7.054 23 C 0.070 3.930 24 F -0.127 7.127 25 C 0.111 3.889 26 H 0.271 0.729 27 H 0.384 0.616 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.409 0.591 33 H 0.161 0.839 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.061 0.939 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.874 -15.681 6.377 17.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.576 4.576 8 H 0.086 0.914 9 C 0.208 3.792 10 O -0.392 6.392 11 C -0.153 4.153 12 C -0.024 4.024 13 N -0.353 5.353 14 C 0.419 3.581 15 O -0.455 6.455 16 N -0.334 5.334 17 C 0.064 3.936 18 C -0.112 4.112 19 C -0.115 4.115 20 C -0.128 4.128 21 C -0.084 4.084 22 Cl -0.025 7.025 23 C 0.047 3.953 24 F -0.106 7.106 25 C -0.010 4.010 26 H 0.081 0.919 27 H 0.235 0.765 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.245 0.755 33 H 0.178 0.822 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.080 0.920 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.158 -15.689 6.732 17.834 hybrid contribution 0.758 0.827 0.005 1.122 sum -4.400 -14.861 6.738 16.900 Atomic orbital electron populations 1.69651 1.06005 1.27952 1.49585 1.25089 0.95064 0.99854 0.93241 0.86330 0.80040 0.82623 0.77807 1.19565 1.20719 1.20731 1.21498 0.93738 0.89927 1.52414 0.91358 1.19632 0.86181 0.91744 0.81656 1.86088 1.51477 1.55162 1.46513 1.22600 0.97675 0.94719 1.00312 1.22054 0.88946 0.96568 0.94855 1.47998 1.25916 1.09983 1.51432 1.15430 0.82182 0.80335 0.80115 1.90886 1.39939 1.63866 1.50806 1.42628 1.35250 1.06242 1.49298 1.17403 0.89933 0.91731 0.94546 1.21543 0.89644 1.01069 0.98929 1.21117 1.00071 0.94142 0.96182 1.20926 0.94158 0.96611 1.01129 1.20672 0.95333 0.91851 1.00498 1.98378 1.94361 1.32771 1.76984 1.17113 0.81096 0.95675 1.01433 1.91506 1.38985 1.85493 1.94583 1.23301 1.02816 0.74659 1.00256 0.91926 0.76473 0.90518 0.90237 0.92278 0.92672 0.75485 0.82206 0.83992 0.84079 0.92022 0.89532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.04 10.69 55.43 0.59 -22.45 16 2 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 3 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -13.46 8.25 -34.44 -0.28 -13.74 16 8 H 0.07 1.68 7.78 -52.49 -0.41 1.27 16 9 C 0.25 5.74 0.88 -89.62 -0.08 5.67 16 10 O -0.58 -14.28 13.17 -35.23 -0.46 -14.75 16 11 C -0.12 -2.16 6.13 -24.90 -0.15 -2.31 16 12 C 0.10 1.63 6.16 -3.06 -0.02 1.62 16 13 N -0.62 -12.12 3.33 -176.20 -0.59 -12.71 16 14 C 0.72 13.76 8.34 -86.92 -0.72 13.04 16 15 O -0.58 -12.67 14.01 5.28 0.07 -12.59 16 16 N -0.69 -10.51 5.18 -14.17 -0.07 -10.58 16 17 C 0.16 2.32 6.31 -83.59 -0.53 1.79 16 18 C -0.09 -1.24 8.70 -39.40 -0.34 -1.58 16 19 C -0.10 -0.99 10.04 -39.60 -0.40 -1.39 16 20 C -0.11 -1.05 9.82 -39.52 -0.39 -1.44 16 21 C -0.06 -0.64 6.32 -39.46 -0.25 -0.89 16 22 Cl -0.05 -0.57 28.61 -51.86 -1.48 -2.05 16 23 C 0.07 0.92 7.28 -39.23 -0.29 0.64 16 24 F -0.13 -1.71 16.53 2.25 0.04 -1.67 16 25 C 0.11 2.55 5.51 -2.51 -0.01 2.53 16 26 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 27 H 0.38 9.75 7.24 45.56 0.33 10.08 16 28 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.08 1.41 8.03 -51.93 -0.42 0.99 16 30 H 0.06 0.90 8.13 -51.93 -0.42 0.47 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.41 5.37 7.65 -40.82 -0.31 5.06 16 33 H 0.16 2.47 6.19 -52.48 -0.33 2.15 16 34 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 35 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.06 1.46 8.03 -51.93 -0.42 1.05 16 37 H 0.09 2.23 7.48 -51.93 -0.39 1.84 16 LS Contribution 332.66 15.07 5.01 5.01 Total: -1.00 -27.96 332.66 -8.66 -36.61 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -3.19 Total: 14.75 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: -3.56 Total: 5.63 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: -0.07 Total: -45.74 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.39 Total: -27.34 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.48 Total: -2.05 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.96 -8.66 -36.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365754823.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.337 kcal (2) G-P(sol) polarization free energy of solvation -27.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds