Wall clock time and date at job start Tue Mar 31 2020 15:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99581 * 2 1 4 4 H 1.48505 * 109.47090 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47575 * 300.00069 * 3 2 1 6 6 H 1.48498 * 109.47273 * 60.00290 * 3 2 1 7 7 C 1.37877 * 120.00367 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99837 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99887 * 0.26944 * 7 2 1 10 10 O 1.42909 * 110.88449 * 59.02628 * 9 7 2 11 11 C 1.55153 * 111.00469 * 182.90765 * 9 7 2 12 12 C 1.54323 * 102.94242 * 153.57710 * 11 9 7 13 13 N 1.47027 * 107.27009 * 337.80683 * 12 11 9 14 14 C 1.34774 * 125.64268 * 178.99699 * 13 12 11 15 15 O 1.21593 * 119.99521 * 179.97438 * 14 13 12 16 16 N 1.34775 * 120.00639 * 359.97126 * 14 13 12 17 17 C 1.40075 * 120.00181 * 175.54094 * 16 14 13 18 18 C 1.38818 * 120.06985 * 34.64623 * 17 16 14 19 19 C 1.38151 * 119.97984 * 179.76816 * 18 17 16 20 20 C 1.38264 * 120.11725 * 0.50476 * 19 18 17 21 21 C 1.38380 * 120.14209 * 359.75088 * 20 19 18 22 22 Cl 1.73599 * 119.98959 * 179.97438 * 21 20 19 23 23 C 1.38417 * 120.01954 * 359.97438 * 21 20 19 24 24 F 1.35102 * 120.05562 * 179.97438 * 23 21 20 25 25 C 1.47461 * 108.72384 * 358.97619 * 13 12 11 26 26 H 0.97001 * 120.00249 * 359.97438 * 1 2 3 27 27 H 0.96706 * 113.99807 * 300.69946 * 10 9 7 28 28 H 1.09001 * 110.71751 * 271.93812 * 11 9 7 29 29 H 1.09000 * 110.71900 * 35.20779 * 11 9 7 30 30 H 1.08999 * 109.87856 * 97.22423 * 12 11 9 31 31 H 1.08993 * 109.88058 * 218.38697 * 12 11 9 32 32 H 0.97000 * 119.99348 * 355.54485 * 16 14 13 33 33 H 1.08003 * 120.01174 * 0.02562 * 18 17 16 34 34 H 1.07992 * 119.93861 * 180.23145 * 19 18 17 35 35 H 1.07998 * 119.93237 * 179.72243 * 20 19 18 36 36 H 1.08999 * 110.35142 * 265.25393 * 25 13 12 37 37 H 1.09000 * 110.40599 * 142.91325 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0073 10 8 0.4061 -2.5936 -1.1558 11 6 2.2257 -3.7042 0.0668 12 6 1.3645 -4.8054 0.7205 13 7 0.2770 -4.1348 1.4480 14 6 -0.7030 -4.7509 2.1382 15 8 -1.5542 -4.0925 2.7044 16 7 -0.7397 -6.0967 2.2009 17 6 -1.7019 -6.7349 2.9940 18 6 -2.9698 -6.1853 3.1266 19 6 -3.9188 -6.8189 3.9054 20 6 -3.6051 -7.9946 4.5618 21 6 -2.3412 -8.5441 4.4374 22 17 -1.9514 -10.0201 5.2639 23 6 -1.3876 -7.9171 3.6540 24 9 -0.1532 -8.4526 3.5324 25 6 0.4360 -2.6764 1.2980 26 1 -0.4850 0.8400 0.0004 27 1 -0.2526 -1.8883 -1.2185 28 1 2.5435 -4.0050 -0.9315 29 1 3.0866 -3.4661 0.6914 30 1 0.9495 -5.4568 -0.0486 31 1 1.9710 -5.3873 1.4144 32 1 -0.0997 -6.6232 1.6969 33 1 -3.2155 -5.2649 2.6178 34 1 -4.9061 -6.3928 4.0051 35 1 -4.3479 -8.4851 5.1735 36 1 0.9838 -2.2657 2.1461 37 1 -0.5378 -2.1955 1.2054 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365754823.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:23 Heat of formation + Delta-G solvation = -110.884653 kcal Electronic energy + Delta-G solvation = -25556.187731 eV Core-core repulsion = 21466.392870 eV Total energy + Delta-G solvation = -4089.794862 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.09432 -41.84523 -40.16235 -39.01470 -37.63394 -36.17396 -35.81048 -34.19186 -32.13143 -31.50247 -30.48604 -29.52227 -27.04435 -24.88675 -24.03587 -23.48012 -21.51489 -21.12897 -19.79162 -19.11278 -18.76569 -18.30810 -17.62785 -17.09862 -17.00528 -16.76151 -16.44948 -16.22620 -15.75120 -15.55974 -15.18772 -14.84889 -14.67993 -14.37551 -14.10790 -13.86240 -13.53150 -13.42957 -13.30164 -12.98677 -12.86127 -12.69647 -12.51294 -12.33599 -12.21078 -12.11951 -12.09633 -11.58738 -11.28782 -11.18805 -10.66797 -10.34673 -9.81143 -9.70373 -9.22960 -8.25864 -6.42241 -0.12627 -0.07207 0.82538 1.38416 1.43637 1.46294 1.55759 1.88047 2.37972 2.43569 2.76435 2.92504 3.00595 3.69713 3.75281 3.80470 4.01434 4.10538 4.19377 4.22391 4.30246 4.56390 4.61971 4.71927 4.82579 5.00325 5.03105 5.06236 5.14501 5.23047 5.28449 5.34975 5.44190 5.69529 5.75812 5.86121 6.06115 6.63941 6.78295 7.27741 7.29834 7.36247 8.79804 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.028106 B = 0.002773 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.003934 B =10095.753624 C =10608.169264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.027 3.973 3 Si 0.964 3.036 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.554 4.554 8 H 0.070 0.930 9 C 0.232 3.768 10 O -0.588 6.588 11 C -0.110 4.110 12 C 0.101 3.899 13 N -0.624 5.624 14 C 0.715 3.285 15 O -0.613 6.613 16 N -0.673 5.673 17 C 0.136 3.864 18 C -0.108 4.108 19 C -0.084 4.084 20 C -0.091 4.091 21 C -0.060 4.060 22 Cl -0.043 7.043 23 C 0.064 3.936 24 F -0.131 7.131 25 C 0.127 3.873 26 H 0.270 0.730 27 H 0.376 0.624 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.419 0.581 33 H 0.135 0.865 34 H 0.174 0.826 35 H 0.177 0.823 36 H 0.045 0.955 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.792 -17.579 7.247 19.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.174 4.174 3 Si 0.789 3.211 4 H -0.188 1.188 5 H -0.206 1.206 6 H -0.209 1.209 7 C -0.592 4.592 8 H 0.088 0.912 9 C 0.192 3.808 10 O -0.396 6.396 11 C -0.147 4.147 12 C -0.021 4.021 13 N -0.359 5.359 14 C 0.417 3.583 15 O -0.493 6.493 16 N -0.321 5.321 17 C 0.039 3.961 18 C -0.129 4.129 19 C -0.102 4.102 20 C -0.110 4.110 21 C -0.088 4.088 22 Cl -0.014 7.014 23 C 0.041 3.959 24 F -0.110 7.110 25 C 0.004 3.996 26 H 0.079 0.921 27 H 0.225 0.775 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.257 0.743 33 H 0.153 0.847 34 H 0.191 0.809 35 H 0.195 0.805 36 H 0.064 0.936 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.056 -17.659 7.599 19.878 hybrid contribution 0.651 1.329 -0.205 1.494 sum -4.405 -16.329 7.394 18.458 Atomic orbital electron populations 1.69762 1.07095 1.28422 1.50161 1.25811 0.95766 1.02787 0.93075 0.85415 0.79159 0.79032 0.77460 1.18849 1.20637 1.20895 1.21820 0.94004 0.91104 1.52308 0.91226 1.19863 0.86717 0.93214 0.81028 1.86080 1.51462 1.54743 1.47333 1.22597 0.97290 0.93354 1.01506 1.22221 0.88163 0.95980 0.95764 1.47905 1.27047 1.08853 1.52144 1.15532 0.81599 0.81446 0.79690 1.90858 1.41148 1.65091 1.52195 1.42317 1.35710 1.04689 1.49419 1.17573 0.90085 0.92649 0.95832 1.21493 0.90498 1.00774 1.00143 1.21437 1.00544 0.93822 0.94422 1.21335 0.93950 0.95733 0.99950 1.20877 0.95634 0.92217 1.00103 1.98386 1.94398 1.32014 1.76596 1.17159 0.81386 0.95464 1.01878 1.91491 1.39322 1.85480 1.94682 1.22801 1.00375 0.76684 0.99761 0.92055 0.77468 0.89459 0.89154 0.90540 0.89229 0.74257 0.84721 0.80901 0.80538 0.93649 0.93335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.69 10.69 21.45 0.23 -48.46 16 2 C 0.03 1.36 5.29 84.65 0.45 1.80 16 3 Si 0.96 40.98 29.54 68.60 2.03 43.01 16 4 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 6 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.55 -28.02 8.25 25.60 0.21 -27.80 16 8 H 0.07 3.41 7.78 -2.91 -0.02 3.39 16 9 C 0.23 10.87 0.88 -10.15 -0.01 10.86 16 10 O -0.59 -29.40 13.17 -148.98 -1.96 -31.36 16 11 C -0.11 -3.97 6.13 31.78 0.19 -3.78 16 12 C 0.10 3.15 6.16 86.73 0.53 3.69 16 13 N -0.62 -24.66 3.33 -829.65 -2.76 -27.42 16 14 C 0.71 27.92 8.34 179.06 1.49 29.41 16 15 O -0.61 -27.99 14.01 -4.01 -0.06 -28.05 16 16 N -0.67 -20.42 5.18 -317.01 -1.64 -22.06 16 17 C 0.14 3.82 6.31 38.14 0.24 4.06 16 18 C -0.11 -2.91 8.70 22.39 0.19 -2.71 16 19 C -0.08 -1.52 10.04 22.26 0.22 -1.30 16 20 C -0.09 -1.45 9.82 22.31 0.22 -1.23 16 21 C -0.06 -1.24 6.32 22.35 0.14 -1.10 16 22 Cl -0.04 -0.80 28.61 -2.72 -0.08 -0.88 16 23 C 0.06 1.60 7.28 22.50 0.16 1.77 16 24 F -0.13 -3.34 16.53 44.97 0.74 -2.60 16 25 C 0.13 6.03 5.51 86.85 0.48 6.51 16 26 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 27 H 0.38 19.86 7.24 -74.05 -0.54 19.32 16 28 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 29 H 0.09 3.05 8.03 -2.39 -0.02 3.03 16 30 H 0.08 2.15 8.13 -2.39 -0.02 2.13 16 31 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.42 10.55 7.65 -92.71 -0.71 9.84 16 33 H 0.14 4.35 6.19 -2.91 -0.02 4.33 16 34 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 35 H 0.18 1.62 8.06 -2.91 -0.02 1.60 16 36 H 0.05 2.25 8.03 -2.39 -0.02 2.23 16 37 H 0.05 2.65 7.48 -2.39 -0.02 2.63 16 Total: -1.00 -62.49 332.66 0.94 -61.56 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: -0.10 Total: 36.10 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: 4.53 Total: 20.17 kcal Atomic # 7 Polarization: -93.77 SS G_CDS: -4.17 Total: -97.95 kcal Atomic # 8 Polarization: -57.39 SS G_CDS: -2.02 Total: -59.41 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.74 Total: -2.60 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -0.08 Total: -0.88 kcal Total: -62.49 0.94 -61.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365754823.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.326 kcal (2) G-P(sol) polarization free energy of solvation -62.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds