Wall clock time and date at job start Tue Mar 31 2020 15:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00302 * 2 1 4 4 H 1.48501 * 109.47566 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47361 * 300.00491 * 3 2 1 6 6 H 1.48501 * 109.47376 * 60.00130 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99716 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00262 * 359.97438 * 7 2 1 10 10 O 1.42899 * 110.64105 * 298.31314 * 9 7 2 11 11 C 1.55157 * 110.87529 * 175.06625 * 9 7 2 12 12 C 1.55122 * 101.48664 * 205.89834 * 11 9 7 13 13 N 1.47418 * 104.72433 * 37.29432 * 12 11 9 14 14 C 1.34785 * 125.64937 * 155.81467 * 13 12 11 15 15 O 1.21592 * 119.99775 * 179.69407 * 14 13 12 16 16 N 1.34774 * 119.99809 * 359.42180 * 14 13 12 17 17 C 1.40079 * 119.99908 * 175.81972 * 16 14 13 18 18 C 1.38823 * 120.06877 * 34.63989 * 17 16 14 19 19 C 1.38145 * 119.97314 * 179.72220 * 18 17 16 20 20 C 1.38266 * 120.12206 * 0.57966 * 19 18 17 21 21 C 1.38375 * 120.14170 * 359.70239 * 20 19 18 22 22 Cl 1.73599 * 119.99217 * 180.02562 * 21 20 19 23 23 C 1.38416 * 120.01956 * 359.97438 * 21 20 19 24 24 F 1.35095 * 120.05875 * 180.02562 * 23 21 20 25 25 C 1.47027 * 108.70381 * 335.55176 * 13 12 11 26 26 H 0.97001 * 119.99771 * 359.97438 * 1 2 3 27 27 H 0.96697 * 114.00337 * 61.68772 * 10 9 7 28 28 H 1.09002 * 111.00135 * 324.14199 * 11 9 7 29 29 H 1.09005 * 111.00329 * 87.98531 * 11 9 7 30 30 H 1.09003 * 110.49953 * 278.44914 * 12 11 9 31 31 H 1.09005 * 110.34151 * 156.05919 * 12 11 9 32 32 H 0.97001 * 120.00157 * 355.81086 * 16 14 13 33 33 H 1.08003 * 120.01290 * 0.02562 * 18 17 16 34 34 H 1.08002 * 119.93870 * 180.32180 * 19 18 17 35 35 H 1.08005 * 119.93285 * 179.71601 * 20 19 18 36 36 H 1.08998 * 109.87935 * 120.69890 * 25 13 12 37 37 H 1.08988 * 109.88326 * 241.71575 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.4503 -2.6185 1.1770 11 6 2.2253 -3.7001 -0.1259 12 6 1.3103 -4.7743 -0.7702 13 7 0.4606 -4.0256 -1.7139 14 6 -0.1466 -4.5395 -2.8019 15 8 -0.8317 -3.8263 -3.5095 16 7 0.0100 -5.8424 -3.1087 17 6 -0.6900 -6.3970 -4.1879 18 6 -0.9392 -5.6344 -5.3209 19 6 -1.6247 -6.1851 -6.3864 20 6 -2.0740 -7.4911 -6.3220 21 6 -1.8335 -8.2538 -5.1927 22 17 -2.3989 -9.8933 -5.1163 23 6 -1.1414 -7.7101 -4.1244 24 9 -0.9057 -8.4541 -3.0217 25 6 0.3801 -2.6268 -1.2681 26 1 -0.4850 0.8401 0.0004 27 1 -0.2277 -1.9345 1.2627 28 1 3.0649 -3.4558 -0.7767 29 1 2.5745 -4.0239 0.8547 30 1 0.6974 -5.2592 -0.0103 31 1 1.9098 -5.5125 -1.3030 32 1 0.6076 -6.3962 -2.5822 33 1 -0.5929 -4.6127 -5.3713 34 1 -1.8137 -5.5930 -7.2696 35 1 -2.6137 -7.9171 -7.1549 36 1 0.7611 -1.9669 -2.0475 37 1 -0.6537 -2.3701 -1.0378 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365754824.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:26 Heat of formation + Delta-G solvation = -92.201060 kcal Electronic energy + Delta-G solvation = -25532.498936 eV Core-core repulsion = 21443.514256 eV Total energy + Delta-G solvation = -4088.984680 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.08757 -40.52347 -38.96583 -37.57045 -36.69948 -34.66785 -34.38067 -32.29103 -30.67612 -30.49513 -29.27804 -27.83713 -25.27576 -23.58360 -22.95149 -22.35797 -19.90358 -19.67225 -18.57078 -17.65903 -17.21377 -17.16106 -16.51171 -15.94536 -15.59982 -15.31064 -15.06031 -14.65278 -14.50917 -14.36335 -13.68584 -13.36918 -13.18387 -13.02484 -12.94810 -12.53913 -12.40207 -12.01609 -11.76249 -11.70028 -11.54988 -11.25637 -11.11658 -10.91196 -10.77258 -10.51776 -10.44706 -10.24061 -9.79355 -9.40987 -8.88459 -8.74791 -8.44837 -8.38896 -7.93784 -6.34467 -4.43243 0.80470 0.87435 1.73123 2.70204 3.15194 3.16908 3.26065 3.29100 3.53305 3.85862 4.08512 4.23261 4.59942 4.66877 4.92816 5.04043 5.13864 5.23599 5.49613 5.57264 5.66066 5.68389 5.88362 5.92282 6.01026 6.10700 6.24462 6.39834 6.59083 6.72045 6.75782 6.78947 7.04585 7.19428 7.37859 7.67116 7.95121 8.17433 8.60299 8.74107 9.22611 9.31777 10.73389 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.027041 B = 0.002808 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.216423 B = 9968.192179 C =10597.109612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.537 4.537 8 H 0.068 0.932 9 C 0.248 3.752 10 O -0.584 6.584 11 C -0.115 4.115 12 C 0.098 3.902 13 N -0.621 5.621 14 C 0.716 3.284 15 O -0.577 6.577 16 N -0.687 5.687 17 C 0.162 3.838 18 C -0.091 4.091 19 C -0.096 4.096 20 C -0.108 4.108 21 C -0.055 4.055 22 Cl -0.053 7.053 23 C 0.071 3.929 24 F -0.127 7.127 25 C 0.121 3.879 26 H 0.270 0.730 27 H 0.383 0.617 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.409 0.591 33 H 0.160 0.840 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.068 0.932 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.458 -14.939 -10.248 18.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.576 4.576 8 H 0.086 0.914 9 C 0.208 3.792 10 O -0.393 6.393 11 C -0.153 4.153 12 C -0.026 4.026 13 N -0.356 5.356 14 C 0.418 3.582 15 O -0.454 6.454 16 N -0.335 5.335 17 C 0.064 3.936 18 C -0.112 4.112 19 C -0.115 4.115 20 C -0.128 4.128 21 C -0.083 4.083 22 Cl -0.024 7.024 23 C 0.048 3.952 24 F -0.105 7.105 25 C -0.001 4.001 26 H 0.080 0.920 27 H 0.233 0.767 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.245 0.755 33 H 0.178 0.822 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.087 0.913 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.769 -14.918 -10.557 18.361 hybrid contribution 0.247 0.761 0.422 0.905 sum -1.523 -14.156 -10.135 17.477 Atomic orbital electron populations 1.69700 1.05994 1.27930 1.49536 1.25083 0.95070 0.99844 0.93316 0.86336 0.80042 0.82667 0.77798 1.19583 1.20749 1.20714 1.21508 0.93711 0.89932 1.52411 0.91409 1.19516 0.86505 0.92111 0.81116 1.86113 1.51836 1.56647 1.44717 1.22767 0.97293 0.94870 1.00357 1.22405 0.92911 0.95253 0.91981 1.48044 1.50026 1.13422 1.24133 1.15424 0.80586 0.80693 0.81457 1.90888 1.44162 1.58542 1.51840 1.42637 1.47594 1.10864 1.32409 1.17401 0.96876 0.90414 0.88956 1.21529 0.98224 1.01704 0.89758 1.21114 0.97314 0.94164 0.98948 1.20928 1.01282 0.94068 0.96518 1.20676 1.03338 0.88247 0.96087 1.98379 1.87751 1.17864 1.98449 1.17116 1.03283 0.90044 0.84807 1.91509 1.92698 1.75805 1.50503 1.23015 1.01899 0.76486 0.98673 0.91975 0.76668 0.90283 0.90341 0.91436 0.92423 0.75466 0.82249 0.84003 0.84069 0.91325 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.12 10.96 55.43 0.61 -22.51 16 2 C 0.07 1.78 5.28 -17.82 -0.09 1.69 16 3 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.54 -13.52 8.13 -34.44 -0.28 -13.80 16 8 H 0.07 1.68 7.78 -52.48 -0.41 1.28 16 9 C 0.25 5.73 0.85 -89.94 -0.08 5.65 16 10 O -0.58 -14.15 13.07 -35.23 -0.46 -14.61 16 11 C -0.11 -2.15 6.24 -24.47 -0.15 -2.30 16 12 C 0.10 1.60 6.62 -2.42 -0.02 1.59 16 13 N -0.62 -12.10 3.33 -176.11 -0.59 -12.69 16 14 C 0.72 13.59 8.34 -86.91 -0.72 12.87 16 15 O -0.58 -12.57 14.08 5.28 0.07 -12.49 16 16 N -0.69 -10.34 5.19 -14.17 -0.07 -10.41 16 17 C 0.16 2.29 6.31 -83.59 -0.53 1.76 16 18 C -0.09 -1.22 8.70 -39.40 -0.34 -1.56 16 19 C -0.10 -0.97 10.04 -39.61 -0.40 -1.37 16 20 C -0.11 -1.04 9.82 -39.52 -0.39 -1.43 16 21 C -0.06 -0.63 6.32 -39.47 -0.25 -0.88 16 22 Cl -0.05 -0.56 28.61 -51.86 -1.48 -2.05 16 23 C 0.07 0.93 7.28 -39.23 -0.29 0.64 16 24 F -0.13 -1.71 16.53 2.25 0.04 -1.67 16 25 C 0.12 2.79 5.23 -3.06 -0.02 2.77 16 26 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 27 H 0.38 9.53 7.45 45.56 0.34 9.87 16 28 H 0.08 1.42 8.04 -51.93 -0.42 1.00 16 29 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.74 7.22 -51.93 -0.37 0.37 16 32 H 0.41 5.22 7.11 -40.82 -0.29 4.93 16 33 H 0.16 2.39 6.19 -52.48 -0.33 2.07 16 34 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 35 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 36 H 0.07 1.73 7.81 -51.93 -0.41 1.32 16 37 H 0.07 1.71 7.92 -51.94 -0.41 1.30 16 LS Contribution 332.04 15.07 5.00 5.00 Total: -1.00 -28.14 332.04 -8.57 -36.71 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -3.12 Total: 14.18 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: -3.55 Total: 5.63 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: -0.05 Total: -45.61 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.39 Total: -27.10 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.48 Total: -2.05 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.14 -8.57 -36.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365754824.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.493 kcal (2) G-P(sol) polarization free energy of solvation -28.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds