Wall clock time and date at job start Tue Mar 31 2020 15:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00302 * 2 1 4 4 H 1.48501 * 109.47566 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47361 * 300.00491 * 3 2 1 6 6 H 1.48501 * 109.47376 * 60.00130 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99716 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00262 * 359.97438 * 7 2 1 10 10 O 1.42899 * 110.64105 * 298.31314 * 9 7 2 11 11 C 1.55157 * 110.87529 * 175.06625 * 9 7 2 12 12 C 1.55122 * 101.48664 * 205.89834 * 11 9 7 13 13 N 1.47418 * 104.72433 * 37.29432 * 12 11 9 14 14 C 1.34785 * 125.64937 * 155.81467 * 13 12 11 15 15 O 1.21592 * 119.99775 * 179.69407 * 14 13 12 16 16 N 1.34774 * 119.99809 * 359.42180 * 14 13 12 17 17 C 1.40079 * 119.99908 * 175.81972 * 16 14 13 18 18 C 1.38823 * 120.06877 * 34.63989 * 17 16 14 19 19 C 1.38145 * 119.97314 * 179.72220 * 18 17 16 20 20 C 1.38266 * 120.12206 * 0.57966 * 19 18 17 21 21 C 1.38375 * 120.14170 * 359.70239 * 20 19 18 22 22 Cl 1.73599 * 119.99217 * 180.02562 * 21 20 19 23 23 C 1.38416 * 120.01956 * 359.97438 * 21 20 19 24 24 F 1.35095 * 120.05875 * 180.02562 * 23 21 20 25 25 C 1.47027 * 108.70381 * 335.55176 * 13 12 11 26 26 H 0.97001 * 119.99771 * 359.97438 * 1 2 3 27 27 H 0.96697 * 114.00337 * 61.68772 * 10 9 7 28 28 H 1.09002 * 111.00135 * 324.14199 * 11 9 7 29 29 H 1.09005 * 111.00329 * 87.98531 * 11 9 7 30 30 H 1.09003 * 110.49953 * 278.44914 * 12 11 9 31 31 H 1.09005 * 110.34151 * 156.05919 * 12 11 9 32 32 H 0.97001 * 120.00157 * 355.81086 * 16 14 13 33 33 H 1.08003 * 120.01290 * 0.02562 * 18 17 16 34 34 H 1.08002 * 119.93870 * 180.32180 * 19 18 17 35 35 H 1.08005 * 119.93285 * 179.71601 * 20 19 18 36 36 H 1.08998 * 109.87935 * 120.69890 * 25 13 12 37 37 H 1.08988 * 109.88326 * 241.71575 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.4503 -2.6185 1.1770 11 6 2.2253 -3.7001 -0.1259 12 6 1.3103 -4.7743 -0.7702 13 7 0.4606 -4.0256 -1.7139 14 6 -0.1466 -4.5395 -2.8019 15 8 -0.8317 -3.8263 -3.5095 16 7 0.0100 -5.8424 -3.1087 17 6 -0.6900 -6.3970 -4.1879 18 6 -0.9392 -5.6344 -5.3209 19 6 -1.6247 -6.1851 -6.3864 20 6 -2.0740 -7.4911 -6.3220 21 6 -1.8335 -8.2538 -5.1927 22 17 -2.3989 -9.8933 -5.1163 23 6 -1.1414 -7.7101 -4.1244 24 9 -0.9057 -8.4541 -3.0217 25 6 0.3801 -2.6268 -1.2681 26 1 -0.4850 0.8401 0.0004 27 1 -0.2277 -1.9345 1.2627 28 1 3.0649 -3.4558 -0.7767 29 1 2.5745 -4.0239 0.8547 30 1 0.6974 -5.2592 -0.0103 31 1 1.9098 -5.5125 -1.3030 32 1 0.6076 -6.3962 -2.5822 33 1 -0.5929 -4.6127 -5.3713 34 1 -1.8137 -5.5930 -7.2696 35 1 -2.6137 -7.9171 -7.1549 36 1 0.7611 -1.9669 -2.0475 37 1 -0.6537 -2.3701 -1.0378 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365754824.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:26 Heat of formation + Delta-G solvation = -110.379671 kcal Electronic energy + Delta-G solvation = -25533.287220 eV Core-core repulsion = 21443.514256 eV Total energy + Delta-G solvation = -4089.772964 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.09741 -41.86755 -40.17742 -39.04843 -37.63760 -36.19888 -35.82913 -34.23775 -32.06562 -31.50132 -30.50119 -29.51586 -27.04857 -24.89735 -24.05175 -23.51994 -21.51134 -21.16640 -19.81373 -19.08490 -18.76809 -18.34383 -17.58994 -17.24059 -17.04783 -16.71567 -16.45838 -16.18444 -15.74835 -15.55171 -15.09430 -14.81133 -14.75719 -14.38208 -14.18070 -13.95547 -13.52484 -13.43563 -13.27089 -13.01221 -12.86642 -12.67387 -12.54019 -12.37340 -12.25575 -12.11709 -12.09132 -11.59133 -11.24091 -11.19422 -10.67010 -10.31371 -9.81530 -9.78628 -9.25753 -8.26981 -6.42493 -0.12595 -0.07326 0.82375 1.36650 1.42289 1.45018 1.54718 1.86618 2.37602 2.43574 2.73510 2.92402 3.00033 3.69746 3.74526 3.80053 3.97382 4.08757 4.19038 4.21698 4.33306 4.52721 4.61932 4.68063 4.82685 5.00045 5.02571 5.08559 5.12637 5.20204 5.27879 5.33398 5.45972 5.69392 5.73505 5.83962 6.06676 6.63472 6.76536 7.26405 7.26956 7.34581 8.79296 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.027041 B = 0.002808 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.216423 B = 9968.192179 C =10597.109612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.026 3.974 3 Si 0.963 3.037 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.279 1.279 7 C -0.555 4.555 8 H 0.068 0.932 9 C 0.232 3.768 10 O -0.587 6.587 11 C -0.109 4.109 12 C 0.101 3.899 13 N -0.626 5.626 14 C 0.715 3.285 15 O -0.612 6.612 16 N -0.672 5.672 17 C 0.135 3.865 18 C -0.107 4.107 19 C -0.084 4.084 20 C -0.091 4.091 21 C -0.061 4.061 22 Cl -0.044 7.044 23 C 0.063 3.937 24 F -0.132 7.132 25 C 0.141 3.859 26 H 0.270 0.730 27 H 0.375 0.625 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.420 0.580 33 H 0.137 0.863 34 H 0.174 0.826 35 H 0.177 0.823 36 H 0.038 0.962 37 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.023 -16.736 -11.539 20.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.175 4.175 3 Si 0.788 3.212 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.205 1.205 7 C -0.593 4.593 8 H 0.086 0.914 9 C 0.192 3.808 10 O -0.395 6.395 11 C -0.147 4.147 12 C -0.020 4.020 13 N -0.362 5.362 14 C 0.418 3.582 15 O -0.492 6.492 16 N -0.321 5.321 17 C 0.038 3.962 18 C -0.128 4.128 19 C -0.102 4.102 20 C -0.110 4.110 21 C -0.089 4.089 22 Cl -0.015 7.015 23 C 0.040 3.960 24 F -0.110 7.110 25 C 0.018 3.982 26 H 0.079 0.921 27 H 0.225 0.775 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.120 0.880 32 H 0.258 0.742 33 H 0.155 0.845 34 H 0.192 0.808 35 H 0.194 0.806 36 H 0.056 0.944 37 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.312 -16.787 -11.851 20.591 hybrid contribution 0.047 1.240 0.728 1.439 sum -1.265 -15.547 -11.122 19.158 Atomic orbital electron populations 1.69806 1.07065 1.28413 1.50100 1.25803 0.95792 1.02779 0.93133 0.85429 0.79167 0.79089 0.77488 1.18877 1.20961 1.20497 1.21832 0.93944 0.91179 1.52323 0.91377 1.19737 0.87068 0.93566 0.80426 1.86105 1.51752 1.56283 1.45387 1.22760 0.96867 0.93478 1.01577 1.22548 0.92542 0.95025 0.91921 1.47936 1.50955 1.12378 1.24937 1.15519 0.80072 0.81728 0.80903 1.90860 1.45597 1.59874 1.52872 1.42315 1.47704 1.09303 1.32803 1.17574 0.98409 0.91166 0.89024 1.21501 0.99461 1.00893 0.90932 1.21444 0.95433 0.94582 0.98776 1.21340 0.99710 0.93362 0.96562 1.20883 1.02939 0.88933 0.96129 1.98387 1.87521 1.17113 1.98441 1.17182 1.03861 0.89644 0.85268 1.91491 1.92834 1.75813 1.50895 1.22460 0.99510 0.78285 0.97955 0.92091 0.77537 0.89440 0.89043 0.90915 0.88001 0.74169 0.84500 0.80843 0.80572 0.94372 0.94955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.89 10.96 21.45 0.24 -48.65 16 2 C 0.03 1.34 5.28 84.66 0.45 1.78 16 3 Si 0.96 41.29 29.54 68.60 2.03 43.32 16 4 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.55 -28.28 8.13 25.60 0.21 -28.07 16 8 H 0.07 3.38 7.78 -2.91 -0.02 3.36 16 9 C 0.23 10.89 0.85 -10.35 -0.01 10.88 16 10 O -0.59 -28.99 13.07 -148.98 -1.95 -30.94 16 11 C -0.11 -3.95 6.24 32.06 0.20 -3.75 16 12 C 0.10 3.17 6.62 86.93 0.58 3.75 16 13 N -0.63 -24.65 3.33 -829.33 -2.76 -27.41 16 14 C 0.72 27.54 8.34 179.05 1.49 29.03 16 15 O -0.61 -27.66 14.08 -4.01 -0.06 -27.72 16 16 N -0.67 -19.90 5.19 -316.99 -1.64 -21.54 16 17 C 0.14 3.73 6.31 38.15 0.24 3.97 16 18 C -0.11 -2.78 8.70 22.39 0.19 -2.59 16 19 C -0.08 -1.47 10.04 22.25 0.22 -1.25 16 20 C -0.09 -1.43 9.82 22.31 0.22 -1.21 16 21 C -0.06 -1.24 6.32 22.34 0.14 -1.10 16 22 Cl -0.04 -0.81 28.61 -2.72 -0.08 -0.89 16 23 C 0.06 1.57 7.28 22.50 0.16 1.74 16 24 F -0.13 -3.38 16.53 44.97 0.74 -2.64 16 25 C 0.14 6.79 5.23 86.73 0.45 7.25 16 26 H 0.27 13.83 8.31 -92.71 -0.77 13.05 16 27 H 0.38 19.44 7.45 -74.06 -0.55 18.88 16 28 H 0.09 3.00 8.04 -2.39 -0.02 2.98 16 29 H 0.09 3.07 8.14 -2.38 -0.02 3.05 16 30 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.10 2.31 7.22 -2.38 -0.02 2.29 16 32 H 0.42 10.13 7.11 -92.71 -0.66 9.47 16 33 H 0.14 4.22 6.19 -2.91 -0.02 4.21 16 34 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 35 H 0.18 1.58 8.06 -2.91 -0.02 1.55 16 36 H 0.04 2.02 7.81 -2.39 -0.02 2.00 16 37 H 0.03 1.74 7.92 -2.39 -0.02 1.72 16 Total: -1.00 -63.18 332.04 1.01 -62.17 By element: Atomic # 1 Polarization: 33.92 SS G_CDS: -0.06 Total: 33.86 kcal Atomic # 6 Polarization: 15.89 SS G_CDS: 4.55 Total: 20.44 kcal Atomic # 7 Polarization: -93.43 SS G_CDS: -4.17 Total: -97.60 kcal Atomic # 8 Polarization: -56.65 SS G_CDS: -2.00 Total: -58.66 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.74 Total: -2.64 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.89 kcal Total: -63.18 1.01 -62.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365754824.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.210 kcal (2) G-P(sol) polarization free energy of solvation -63.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds