Wall clock time and date at job start Tue Mar 31 2020 15:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13612 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 S 1.81404 * 109.47192 * 26.72301 * 3 2 1 5 5 C 1.76192 * 102.99967 * 180.02562 * 4 3 2 6 6 C 1.39091 * 120.01016 * 359.72335 * 5 4 3 7 7 C 1.38184 * 120.21414 * 179.74872 * 6 5 4 8 8 C 1.38041 * 120.23678 * 0.54854 * 7 6 5 9 9 C 1.39600 * 120.01412 * 359.70930 * 8 7 6 10 10 C 1.47841 * 120.10860 * 180.02562 * 9 8 7 11 11 O 1.21574 * 120.00187 * 179.97438 * 10 9 8 12 12 N 1.34774 * 119.99815 * 359.97056 * 10 9 8 13 13 C 1.40518 * 120.00098 * 180.02562 * 12 10 9 14 14 C 1.40671 * 126.08253 * 359.69112 * 13 12 10 15 15 N 1.30904 * 108.38417 * 179.85250 * 14 13 12 16 16 N 1.40069 * 108.41607 * 0.40632 * 15 14 13 17 17 C 1.37318 * 126.07044 * 179.74165 * 16 15 14 18 18 H 1.07993 * 120.00221 * 180.02562 * 17 16 15 19 19 C 1.38989 * 119.99912 * 359.97438 * 17 16 15 20 20 N 1.31300 * 119.99932 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99935 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46800 * 60.00802 * 21 19 17 23 23 H 1.48499 * 109.47077 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47403 * 300.00399 * 21 19 17 25 25 C 1.35699 * 126.08984 * 179.97438 * 13 12 10 26 26 C 1.38703 * 120.01054 * 179.97438 * 5 4 3 27 27 H 1.09002 * 109.47132 * 146.72353 * 3 2 1 28 28 H 1.09001 * 109.47213 * 266.72382 * 3 2 1 29 29 H 1.07994 * 119.89328 * 0.02562 * 6 5 4 30 30 H 1.08008 * 119.87971 * 180.25486 * 7 6 5 31 31 H 1.08004 * 119.99139 * 179.72191 * 8 7 6 32 32 H 0.97005 * 120.00247 * 0.02562 * 12 10 9 33 33 H 1.07997 * 125.80630 * 359.97438 * 14 13 12 34 34 H 0.97002 * 119.99698 * 179.97438 * 20 19 17 35 35 H 1.07998 * 126.24532 * 359.97438 * 25 13 12 36 36 H 1.07998 * 120.11473 * 359.95460 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 16 3.2134 -1.5267 -0.7691 5 6 4.9641 -1.3489 -0.6791 6 6 5.5190 -0.2072 -0.1105 7 6 6.8914 -0.0657 -0.0330 8 6 7.7209 -1.0510 -0.5295 9 6 7.1744 -2.1984 -1.1071 10 6 8.0609 -3.2553 -1.6389 11 8 7.5828 -4.2540 -2.1411 12 7 9.3990 -3.1116 -1.5672 13 6 10.2417 -4.1158 -2.0733 14 6 9.8287 -5.3197 -2.6723 15 7 10.8950 -5.9953 -3.0190 16 7 12.0263 -5.2574 -2.6483 17 6 13.3338 -5.6322 -2.8375 18 1 14.1338 -4.9842 -2.5115 19 6 13.6274 -6.8459 -3.4477 20 7 12.6547 -7.6340 -3.8436 21 14 15.4059 -7.3555 -3.7057 22 1 16.0924 -7.4393 -2.3915 23 1 15.4491 -8.6815 -4.3726 24 1 16.0901 -6.3505 -4.5583 25 6 11.5985 -4.0993 -2.0662 26 6 5.7892 -2.3449 -1.1799 27 1 2.9710 0.8600 -0.5639 28 1 2.9714 0.0596 1.0260 29 1 4.8753 0.5691 0.2758 30 1 7.3165 0.8212 0.4133 31 1 8.7931 -0.9343 -0.4710 32 1 9.7805 -2.3149 -1.1663 33 1 8.8060 -5.6324 -2.8226 34 1 12.8596 -8.4809 -4.2697 35 1 12.2255 -3.3134 -1.6717 36 1 5.3606 -3.2308 -1.6249 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411695799.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:11 Heat of formation + Delta-G solvation = 112.640231 kcal Electronic energy + Delta-G solvation = -22781.919655 eV Core-core repulsion = 19166.923242 eV Total energy + Delta-G solvation = -3614.996413 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -40.28214 -39.36170 -37.96617 -37.21872 -34.36387 -33.28249 -31.98027 -31.29325 -30.66350 -30.18120 -27.77307 -25.14429 -23.85496 -23.16076 -21.14178 -20.56004 -19.51092 -19.09589 -17.80626 -17.40806 -16.90298 -15.99436 -15.79287 -15.70360 -15.50349 -15.28827 -14.71139 -14.65787 -14.26280 -13.98343 -13.59036 -13.42391 -13.36697 -13.02648 -12.99623 -12.91701 -12.59718 -11.95681 -11.76445 -11.68812 -11.45671 -11.26538 -10.98995 -10.72967 -10.57645 -10.26080 -10.14969 -9.34468 -9.28154 -9.18449 -8.83837 -8.08933 -7.88365 -6.73766 -6.58007 -4.25282 0.48733 0.57257 0.94796 1.71310 2.13807 2.50816 2.75593 2.98577 3.03274 3.07755 3.14060 3.47739 3.49041 3.82655 3.84773 4.27955 4.40274 4.43096 4.50722 4.53149 4.70208 4.83957 4.99977 5.00268 5.13625 5.30876 5.57067 5.82125 5.99154 6.05976 6.21203 6.37743 6.49157 6.86027 6.86787 6.92146 7.07194 7.20410 7.82769 8.11301 8.23617 8.58489 8.78174 9.34538 9.63808 10.37796 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.044671 B = 0.001934 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.652603 B =14475.330282 C =15086.836040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C 0.218 3.782 3 C -0.029 4.029 4 S -0.059 6.059 5 C -0.100 4.100 6 C -0.118 4.118 7 C -0.104 4.104 8 C -0.092 4.092 9 C -0.094 4.094 10 C 0.536 3.464 11 O -0.529 6.529 12 N -0.613 5.613 13 C -0.063 4.063 14 C -0.030 4.030 15 N -0.260 5.260 16 N -0.141 5.141 17 C -0.323 4.323 18 H 0.116 0.884 19 C 0.046 3.954 20 N -0.769 5.769 21 Si 0.935 3.065 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.267 1.267 25 C -0.083 4.083 26 C -0.039 4.039 27 H 0.135 0.865 28 H 0.135 0.865 29 H 0.128 0.872 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.396 0.604 33 H 0.177 0.823 34 H 0.276 0.724 35 H 0.146 0.854 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.384 17.666 8.901 22.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.078 5.078 2 C -0.101 4.101 3 C -0.179 4.179 4 S 0.183 5.817 5 C -0.213 4.213 6 C -0.142 4.142 7 C -0.123 4.123 8 C -0.113 4.113 9 C -0.099 4.099 10 C 0.323 3.677 11 O -0.407 6.407 12 N -0.255 5.255 13 C -0.169 4.169 14 C -0.205 4.205 15 N -0.091 5.091 16 N 0.092 4.908 17 C -0.456 4.456 18 H 0.134 0.866 19 C -0.171 4.171 20 N -0.395 5.395 21 Si 0.759 3.241 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.191 1.191 25 C -0.234 4.234 26 C -0.063 4.063 27 H 0.153 0.847 28 H 0.153 0.847 29 H 0.145 0.855 30 H 0.151 0.849 31 H 0.149 0.851 32 H 0.230 0.770 33 H 0.194 0.806 34 H 0.087 0.913 35 H 0.164 0.836 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.794 14.777 7.442 20.915 hybrid contribution 2.037 2.112 1.064 3.122 sum -10.757 16.889 8.506 21.756 Atomic orbital electron populations 1.81311 1.11966 1.06915 1.07605 1.27697 0.93624 0.94544 0.94211 1.20998 0.86175 1.02989 1.07785 1.86152 0.97698 1.22656 1.75238 1.21561 0.96270 0.98544 1.04906 1.21242 0.96162 0.96378 1.00426 1.20974 0.92736 0.99135 0.99500 1.21438 1.00358 0.92884 0.96611 1.20003 0.93619 0.95386 1.00893 1.17957 0.81908 0.86622 0.81241 1.90687 1.74941 1.30025 1.45049 1.42382 1.04696 1.20639 1.57775 1.17244 0.88536 0.94319 1.16756 1.24141 0.99254 0.93127 1.03985 1.78272 0.89485 1.17756 1.23635 1.44557 1.05572 1.09310 1.31342 1.19839 0.79189 1.05226 1.41309 0.86604 1.25650 1.00335 0.95629 0.95511 1.70208 1.32047 1.08869 1.28360 0.85887 0.80494 0.78499 0.79229 1.19143 1.20109 1.19147 1.21245 0.92848 0.95478 1.13861 1.20834 0.91505 0.97812 0.96130 0.84726 0.84724 0.85466 0.84877 0.85065 0.76951 0.80635 0.91341 0.83648 0.83766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.09 18.54 42.16 0.78 -3.30 16 2 C 0.22 1.53 15.44 -20.76 -0.32 1.21 16 3 C -0.03 -0.11 4.81 34.37 0.17 0.06 16 4 S -0.06 -0.45 21.88 -107.50 -2.35 -2.80 16 5 C -0.10 -0.87 6.11 -39.09 -0.24 -1.11 16 6 C -0.12 -0.75 9.36 -39.29 -0.37 -1.11 16 7 C -0.10 -0.69 10.02 -39.67 -0.40 -1.09 16 8 C -0.09 -0.83 9.54 -39.15 -0.37 -1.20 16 9 C -0.09 -1.18 5.87 -105.00 -0.62 -1.79 16 10 C 0.54 9.22 7.74 -12.33 -0.10 9.13 16 11 O -0.53 -11.19 13.49 5.30 0.07 -11.12 16 12 N -0.61 -10.50 5.41 -10.85 -0.06 -10.56 16 13 C -0.06 -1.42 6.90 -83.86 -0.58 -2.00 16 14 C -0.03 -0.77 10.85 -17.03 -0.18 -0.95 16 15 N -0.26 -7.51 10.39 30.80 0.32 -7.19 16 16 N -0.14 -3.80 3.74 -11.41 -0.04 -3.84 16 17 C -0.32 -8.42 10.25 -14.82 -0.15 -8.57 16 18 H 0.12 2.66 7.83 -52.49 -0.41 2.25 16 19 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 20 N -0.77 -21.28 11.81 55.50 0.66 -20.62 16 21 Si 0.94 18.62 29.55 -169.99 -5.02 13.59 16 22 H -0.27 -5.15 7.11 56.52 0.40 -4.74 16 23 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 25 C -0.08 -1.91 11.49 -16.39 -0.19 -2.09 16 26 C -0.04 -0.46 9.34 -38.95 -0.36 -0.82 16 27 H 0.13 0.15 7.73 -51.92 -0.40 -0.25 16 28 H 0.13 0.15 7.75 -51.92 -0.40 -0.25 16 29 H 0.13 0.35 5.86 -52.49 -0.31 0.04 16 30 H 0.13 0.51 8.06 -52.48 -0.42 0.09 16 31 H 0.13 0.92 6.40 -52.48 -0.34 0.59 16 32 H 0.40 5.05 6.85 -40.82 -0.28 4.77 16 33 H 0.18 4.54 5.91 -52.49 -0.31 4.23 16 34 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.15 2.73 8.06 -52.49 -0.42 2.30 16 36 H 0.14 1.87 7.65 -52.49 -0.40 1.47 16 LS Contribution 339.76 15.07 5.12 5.12 Total: -1.00 -35.45 339.76 -7.17 -42.62 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -2.83 Total: 7.36 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -3.81 Total: -9.26 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 1.66 Total: -45.51 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.07 Total: -11.12 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.02 Total: 13.59 kcal Atomic # 16 Polarization: -0.45 SS G_CDS: -2.35 Total: -2.80 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.45 -7.17 -42.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411695799.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.258 kcal (2) G-P(sol) polarization free energy of solvation -35.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds