Wall clock time and date at job start Tue Mar 31 2020 15:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13612 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 S 1.81404 * 109.47192 * 26.72301 * 3 2 1 5 5 C 1.76192 * 102.99967 * 180.02562 * 4 3 2 6 6 C 1.39091 * 120.01016 * 359.72335 * 5 4 3 7 7 C 1.38184 * 120.21414 * 179.74872 * 6 5 4 8 8 C 1.38041 * 120.23678 * 0.54854 * 7 6 5 9 9 C 1.39600 * 120.01412 * 359.70930 * 8 7 6 10 10 C 1.47841 * 120.10860 * 180.02562 * 9 8 7 11 11 O 1.21574 * 120.00187 * 179.97438 * 10 9 8 12 12 N 1.34774 * 119.99815 * 359.97056 * 10 9 8 13 13 C 1.40518 * 120.00098 * 180.02562 * 12 10 9 14 14 C 1.40671 * 126.08253 * 359.69112 * 13 12 10 15 15 N 1.30904 * 108.38417 * 179.85250 * 14 13 12 16 16 N 1.40069 * 108.41607 * 0.40632 * 15 14 13 17 17 C 1.37318 * 126.07044 * 179.74165 * 16 15 14 18 18 H 1.07993 * 120.00221 * 180.02562 * 17 16 15 19 19 C 1.38989 * 119.99912 * 359.97438 * 17 16 15 20 20 N 1.31300 * 119.99932 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99935 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46800 * 60.00802 * 21 19 17 23 23 H 1.48499 * 109.47077 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47403 * 300.00399 * 21 19 17 25 25 C 1.35699 * 126.08984 * 179.97438 * 13 12 10 26 26 C 1.38703 * 120.01054 * 179.97438 * 5 4 3 27 27 H 1.09002 * 109.47132 * 146.72353 * 3 2 1 28 28 H 1.09001 * 109.47213 * 266.72382 * 3 2 1 29 29 H 1.07994 * 119.89328 * 0.02562 * 6 5 4 30 30 H 1.08008 * 119.87971 * 180.25486 * 7 6 5 31 31 H 1.08004 * 119.99139 * 179.72191 * 8 7 6 32 32 H 0.97005 * 120.00247 * 0.02562 * 12 10 9 33 33 H 1.07997 * 125.80630 * 359.97438 * 14 13 12 34 34 H 0.97002 * 119.99698 * 179.97438 * 20 19 17 35 35 H 1.07998 * 126.24532 * 359.97438 * 25 13 12 36 36 H 1.07998 * 120.11473 * 359.95460 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 16 3.2134 -1.5267 -0.7691 5 6 4.9641 -1.3489 -0.6791 6 6 5.5190 -0.2072 -0.1105 7 6 6.8914 -0.0657 -0.0330 8 6 7.7209 -1.0510 -0.5295 9 6 7.1744 -2.1984 -1.1071 10 6 8.0609 -3.2553 -1.6389 11 8 7.5828 -4.2540 -2.1411 12 7 9.3990 -3.1116 -1.5672 13 6 10.2417 -4.1158 -2.0733 14 6 9.8287 -5.3197 -2.6723 15 7 10.8950 -5.9953 -3.0190 16 7 12.0263 -5.2574 -2.6483 17 6 13.3338 -5.6322 -2.8375 18 1 14.1338 -4.9842 -2.5115 19 6 13.6274 -6.8459 -3.4477 20 7 12.6547 -7.6340 -3.8436 21 14 15.4059 -7.3555 -3.7057 22 1 16.0924 -7.4393 -2.3915 23 1 15.4491 -8.6815 -4.3726 24 1 16.0901 -6.3505 -4.5583 25 6 11.5985 -4.0993 -2.0662 26 6 5.7892 -2.3449 -1.1799 27 1 2.9710 0.8600 -0.5639 28 1 2.9714 0.0596 1.0260 29 1 4.8753 0.5691 0.2758 30 1 7.3165 0.8212 0.4133 31 1 8.7931 -0.9343 -0.4710 32 1 9.7805 -2.3149 -1.1663 33 1 8.8060 -5.6324 -2.8226 34 1 12.8596 -8.4809 -4.2697 35 1 12.2255 -3.3134 -1.6717 36 1 5.3606 -3.2308 -1.6249 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411695799.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:10 Heat of formation + Delta-G solvation = 88.718311 kcal Electronic energy + Delta-G solvation = -22782.956987 eV Core-core repulsion = 19166.923242 eV Total energy + Delta-G solvation = -3616.033745 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.79937 -40.74297 -39.11655 -37.82468 -36.00087 -35.04118 -32.80768 -32.15579 -31.97530 -31.12504 -29.49897 -26.91488 -24.95359 -23.88501 -22.87522 -21.88687 -21.21315 -19.92348 -19.20901 -18.61779 -17.50560 -17.39414 -17.00178 -16.83712 -16.28269 -16.18359 -16.03390 -15.69336 -15.56535 -15.10689 -14.95262 -14.76581 -14.62732 -13.94308 -13.94104 -13.64482 -13.46952 -13.30422 -13.12782 -12.88272 -12.85868 -12.61449 -12.36798 -12.12994 -11.86258 -11.22828 -11.00526 -10.86200 -10.81463 -10.76268 -10.10690 -10.00160 -8.53959 -8.46720 -8.45805 -6.23443 -0.19384 -0.03633 0.25704 1.18233 1.28984 1.41154 1.57828 1.63802 1.64456 1.90843 2.01895 2.05380 2.28429 2.45763 2.71282 2.89103 2.91478 3.10875 3.73395 3.90792 4.10203 4.12525 4.18223 4.33597 4.43079 4.46755 4.56845 4.66901 4.92392 5.00869 5.05799 5.18077 5.29159 5.34564 5.37877 5.45508 5.83080 5.96679 6.31333 6.37119 6.71830 6.74443 7.34961 7.47617 7.68313 8.53400 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.044671 B = 0.001934 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.652603 B =14475.330282 C =15086.836040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.245 3.755 3 C -0.016 4.016 4 S -0.108 6.108 5 C -0.096 4.096 6 C -0.097 4.097 7 C -0.092 4.092 8 C -0.088 4.088 9 C -0.121 4.121 10 C 0.535 3.465 11 O -0.580 6.580 12 N -0.605 5.605 13 C -0.047 4.047 14 C -0.060 4.060 15 N -0.311 5.311 16 N -0.167 5.167 17 C -0.354 4.354 18 H 0.144 0.856 19 C -0.008 4.008 20 N -0.826 5.826 21 Si 1.020 2.980 22 H -0.252 1.252 23 H -0.280 1.280 24 H -0.252 1.252 25 C -0.076 4.076 26 C -0.063 4.063 27 H 0.174 0.826 28 H 0.174 0.826 29 H 0.177 0.823 30 H 0.178 0.822 31 H 0.152 0.848 32 H 0.420 0.580 33 H 0.164 0.836 34 H 0.276 0.724 35 H 0.193 0.807 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.961 22.397 11.276 26.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.073 4.073 3 C -0.165 4.165 4 S 0.134 5.866 5 C -0.209 4.209 6 C -0.121 4.121 7 C -0.112 4.112 8 C -0.109 4.109 9 C -0.126 4.126 10 C 0.324 3.676 11 O -0.461 6.461 12 N -0.250 5.250 13 C -0.154 4.154 14 C -0.235 4.235 15 N -0.143 5.143 16 N 0.064 4.936 17 C -0.485 4.485 18 H 0.161 0.839 19 C -0.219 4.219 20 N -0.454 5.454 21 Si 0.839 3.161 22 H -0.176 1.176 23 H -0.205 1.205 24 H -0.176 1.176 25 C -0.227 4.227 26 C -0.088 4.088 27 H 0.191 0.809 28 H 0.191 0.809 29 H 0.194 0.806 30 H 0.195 0.805 31 H 0.169 0.831 32 H 0.259 0.741 33 H 0.181 0.819 34 H 0.086 0.914 35 H 0.210 0.790 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.385 19.573 9.850 24.693 hybrid contribution 1.377 0.835 0.423 1.665 sum -10.008 20.408 10.273 24.943 Atomic orbital electron populations 1.81345 1.14135 1.08931 1.09925 1.28226 0.94203 0.92663 0.92218 1.21339 0.83552 1.01440 1.10174 1.86477 0.97799 1.26212 1.76161 1.21530 0.96053 0.98579 1.04710 1.21872 0.96950 0.95727 0.97515 1.21492 0.92531 0.99376 0.97755 1.21711 1.01921 0.91761 0.95480 1.19606 0.92871 0.95838 1.04240 1.18861 0.82112 0.86966 0.79626 1.90660 1.75822 1.32530 1.47067 1.42273 1.04360 1.20408 1.57970 1.17327 0.89232 0.94067 1.14748 1.24155 0.98468 0.95140 1.05762 1.78161 0.90847 1.19834 1.25497 1.44852 1.05562 1.10469 1.32681 1.20622 0.79569 1.06357 1.41973 0.83886 1.26912 1.05428 0.95189 0.94392 1.70406 1.35060 1.09611 1.30293 0.84640 0.73927 0.77852 0.79707 1.17614 1.20493 1.17628 1.22018 0.93394 0.95162 1.12115 1.20700 0.91939 0.98307 0.97841 0.80854 0.80857 0.80564 0.80466 0.83066 0.74103 0.81869 0.91427 0.79025 0.86962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.07 18.54 20.01 0.37 -8.70 16 2 C 0.24 2.81 15.44 89.44 1.38 4.19 16 3 C -0.02 -0.04 4.81 70.17 0.34 0.30 16 4 S -0.11 -1.45 21.88 -56.49 -1.24 -2.68 16 5 C -0.10 -1.44 6.11 22.59 0.14 -1.30 16 6 C -0.10 -0.66 9.36 22.46 0.21 -0.45 16 7 C -0.09 -0.66 10.02 22.21 0.22 -0.44 16 8 C -0.09 -1.26 9.54 22.55 0.22 -1.04 16 9 C -0.12 -2.97 5.87 -20.11 -0.12 -3.09 16 10 C 0.54 19.05 7.74 86.79 0.67 19.72 16 11 O -0.58 -26.58 13.49 -3.95 -0.05 -26.64 16 12 N -0.61 -20.54 5.41 -306.52 -1.66 -22.20 16 13 C -0.05 -2.18 6.90 37.75 0.26 -1.92 16 14 C -0.06 -3.34 10.85 85.43 0.93 -2.41 16 15 N -0.31 -18.99 10.39 -56.46 -0.59 -19.58 16 16 N -0.17 -9.23 3.74 -190.01 -0.71 -9.94 16 17 C -0.35 -18.58 10.25 84.01 0.86 -17.72 16 18 H 0.14 6.39 7.83 -2.91 -0.02 6.37 16 19 C -0.01 -0.40 5.50 84.95 0.47 0.07 16 20 N -0.83 -47.98 11.81 21.66 0.26 -47.72 16 21 Si 1.02 38.26 29.55 68.60 2.03 40.28 16 22 H -0.25 -8.78 7.11 99.48 0.71 -8.07 16 23 H -0.28 -10.49 7.11 99.48 0.71 -9.79 16 24 H -0.25 -8.79 7.11 99.48 0.71 -8.08 16 25 C -0.08 -3.47 11.49 83.38 0.96 -2.51 16 26 C -0.06 -1.52 9.34 22.68 0.21 -1.31 16 27 H 0.17 -0.77 7.73 -2.39 -0.02 -0.79 16 28 H 0.17 -0.77 7.75 -2.39 -0.02 -0.79 16 29 H 0.18 -0.53 5.86 -2.91 -0.02 -0.55 16 30 H 0.18 -0.13 8.06 -2.91 -0.02 -0.16 16 31 H 0.15 1.46 6.40 -2.91 -0.02 1.44 16 32 H 0.42 9.75 6.85 -92.70 -0.64 9.12 16 33 H 0.16 9.28 5.91 -2.91 -0.02 9.27 16 34 H 0.28 14.80 8.31 -92.71 -0.77 14.03 16 35 H 0.19 6.60 8.06 -2.91 -0.02 6.58 16 36 H 0.11 3.30 7.65 -2.91 -0.02 3.28 16 Total: -1.00 -88.89 339.76 5.69 -83.21 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 0.53 Total: 21.86 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: 6.74 Total: -7.90 kcal Atomic # 7 Polarization: -105.81 SS G_CDS: -2.33 Total: -108.14 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.05 Total: -26.64 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.28 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -1.24 Total: -2.68 kcal Total: -88.89 5.69 -83.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411695799.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.923 kcal (2) G-P(sol) polarization free energy of solvation -88.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds