Wall clock time and date at job start Tue Mar 31 2020 15:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99847 * 2 1 4 4 H 1.48504 * 109.47058 * 269.08081 * 3 2 1 5 5 H 1.48496 * 109.47578 * 29.07901 * 3 2 1 6 6 H 1.48504 * 109.47075 * 149.08205 * 3 2 1 7 7 C 1.37877 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00013 * 353.97714 * 7 2 1 9 9 C 1.50703 * 120.00128 * 173.98355 * 7 2 1 10 10 O 1.42909 * 110.88216 * 330.40931 * 9 7 2 11 11 C 1.55146 * 111.04080 * 94.31310 * 9 7 2 12 12 C 1.54340 * 103.02286 * 153.39797 * 11 9 7 13 13 N 1.47019 * 107.26002 * 338.14317 * 12 11 9 14 14 C 1.34776 * 125.64571 * 178.85167 * 13 12 11 15 15 O 1.21592 * 120.00195 * 179.68758 * 14 13 12 16 16 N 1.34782 * 119.99734 * 359.68785 * 14 13 12 17 17 C 1.40132 * 119.99794 * 185.44163 * 16 14 13 18 18 C 1.38793 * 120.06554 * 19.48850 * 17 16 14 19 19 C 1.38146 * 119.96924 * 180.02562 * 18 17 16 20 20 C 1.38378 * 120.09458 * 0.02562 * 19 18 17 21 21 Cl 1.73603 * 119.93196 * 179.97438 * 20 19 18 22 22 C 1.38366 * 120.13200 * 359.96611 * 20 19 18 23 23 C 1.38300 * 120.02913 * 0.03992 * 22 20 19 24 24 F 1.35100 * 120.04804 * 180.25812 * 23 22 20 25 25 C 1.47428 * 108.70709 * 358.58244 * 13 12 11 26 26 H 0.97001 * 119.99894 * 0.02562 * 1 2 3 27 27 H 0.96696 * 113.99896 * 301.21004 * 10 9 7 28 28 H 1.09009 * 110.72382 * 271.95575 * 11 9 7 29 29 H 1.08997 * 110.72004 * 35.22904 * 11 9 7 30 30 H 1.08996 * 109.98734 * 218.66724 * 12 11 9 31 31 H 1.08998 * 109.77591 * 97.49923 * 12 11 9 32 32 H 0.96995 * 120.00030 * 5.44121 * 16 14 13 33 33 H 1.08002 * 120.01448 * 359.97438 * 18 17 16 34 34 H 1.08000 * 119.94867 * 180.02562 * 19 18 17 35 35 H 1.07999 * 119.98645 * 180.02562 * 22 20 19 36 36 H 1.08993 * 110.36395 * 143.19450 * 25 13 12 37 37 H 1.08998 * 110.36730 * 265.41143 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5160 2.0352 -1.3999 5 1 1.4370 2.6582 0.6804 6 1 3.5368 1.4459 0.7194 7 6 2.0045 -1.1941 0.0005 8 1 1.4690 -2.1268 0.0991 9 6 3.5053 -1.1978 -0.1363 10 8 3.9501 -0.0744 -0.8996 11 6 4.1914 -1.2316 1.2549 12 6 5.5481 -1.9046 0.9573 13 7 5.3930 -2.6657 -0.2909 14 6 6.3602 -3.3785 -0.9015 15 8 6.1164 -3.9761 -1.9320 16 7 7.5977 -3.4290 -0.3698 17 6 8.6317 -4.0741 -1.0615 18 6 8.5192 -4.3018 -2.4260 19 6 9.5395 -4.9383 -3.1058 20 6 10.6736 -5.3500 -2.4282 21 17 11.9530 -6.1502 -3.2866 22 6 10.7901 -5.1249 -1.0680 23 6 9.7718 -4.4882 -0.3821 24 9 9.8874 -4.2636 0.9451 25 6 4.0027 -2.5253 -0.7607 26 1 -0.4850 0.8401 -0.0004 27 1 3.5801 -0.0341 -1.7920 28 1 4.3353 -0.2215 1.6386 29 1 3.6124 -1.8327 1.9559 30 1 5.8164 -2.5780 1.7713 31 1 6.3183 -1.1432 0.8341 32 1 7.7725 -3.0188 0.4916 33 1 7.6341 -3.9821 -2.9559 34 1 9.4518 -5.1150 -4.1677 35 1 11.6764 -5.4468 -0.5415 36 1 3.9740 -2.4669 -1.8487 37 1 3.3976 -3.3614 -0.4103 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413505381.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:29 Heat of formation + Delta-G solvation = -85.225057 kcal Electronic energy + Delta-G solvation = -25417.544650 eV Core-core repulsion = 21328.862472 eV Total energy + Delta-G solvation = -4088.682178 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.21767 -40.81271 -39.18441 -37.94639 -36.70546 -35.02584 -34.76670 -32.46089 -31.11293 -30.72537 -29.29063 -28.38872 -25.42768 -23.74431 -23.03849 -22.39679 -20.08223 -19.96716 -18.82275 -17.86342 -17.55701 -17.36676 -16.54908 -16.06948 -15.69625 -15.62007 -15.31585 -15.02060 -14.70208 -14.22678 -14.11404 -13.83761 -13.58179 -13.41341 -12.84305 -12.63242 -12.58811 -12.25855 -12.12664 -11.95717 -11.72107 -11.63201 -11.30307 -11.11141 -10.65495 -10.53931 -10.48349 -10.32951 -9.91908 -9.36119 -9.20662 -8.76215 -8.68262 -8.42927 -8.06605 -6.29279 -4.42195 0.69694 0.83400 1.77741 2.42019 2.93116 3.35158 3.38873 3.45615 3.62234 3.80710 3.85902 4.38426 4.39588 4.65326 4.81865 4.90169 4.98106 5.14091 5.19960 5.31796 5.40756 5.58570 5.66224 5.71015 5.80697 5.93945 5.96228 6.09067 6.31676 6.37453 6.48682 6.59801 6.61297 6.89272 6.96333 7.31739 7.86949 7.99702 8.43405 8.51967 8.70794 9.30353 10.79544 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.030291 B = 0.002652 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.146848 B =10555.035203 C =10900.547263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.073 3.927 3 Si 0.949 3.051 4 H -0.294 1.294 5 H -0.325 1.325 6 H -0.268 1.268 7 C -0.555 4.555 8 H 0.083 0.917 9 C 0.220 3.780 10 O -0.558 6.558 11 C -0.118 4.118 12 C 0.094 3.906 13 N -0.617 5.617 14 C 0.720 3.280 15 O -0.575 6.575 16 N -0.680 5.680 17 C 0.160 3.840 18 C -0.106 4.106 19 C -0.091 4.091 20 C -0.040 4.040 21 Cl -0.066 7.066 22 C -0.121 4.121 23 C 0.065 3.935 24 F -0.133 7.133 25 C 0.107 3.893 26 H 0.268 0.732 27 H 0.373 0.627 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.412 0.588 33 H 0.179 0.821 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.074 0.926 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.644 -7.749 -1.575 22.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.133 4.133 3 Si 0.785 3.215 4 H -0.221 1.221 5 H -0.257 1.257 6 H -0.194 1.194 7 C -0.592 4.592 8 H 0.101 0.899 9 C 0.180 3.820 10 O -0.366 6.366 11 C -0.156 4.156 12 C -0.029 4.029 13 N -0.352 5.352 14 C 0.422 3.578 15 O -0.453 6.453 16 N -0.325 5.325 17 C 0.062 3.938 18 C -0.126 4.126 19 C -0.111 4.111 20 C -0.068 4.068 21 Cl -0.037 7.037 22 C -0.141 4.141 23 C 0.043 3.957 24 F -0.112 7.112 25 C -0.015 4.015 26 H 0.078 0.922 27 H 0.221 0.779 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.248 0.752 33 H 0.195 0.805 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.092 0.908 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 20.659 -8.017 -1.792 22.232 hybrid contribution 0.341 0.838 0.296 0.952 sum 21.000 -7.179 -1.496 22.243 Atomic orbital electron populations 1.69954 1.06828 1.27959 1.47108 1.25149 0.94971 1.00511 0.92654 0.85671 0.77965 0.79975 0.77902 1.22137 1.25691 1.19402 1.21095 0.88116 0.95610 1.54375 0.89882 1.20232 0.93780 0.80733 0.87285 1.86185 1.73196 1.47670 1.29583 1.22935 0.92539 1.00995 0.99134 1.22195 1.00793 0.94518 0.85372 1.47790 1.11440 1.49636 1.26377 1.15372 0.79181 0.79987 0.83217 1.90799 1.80676 1.49400 1.24467 1.42641 1.07566 1.58162 1.24110 1.17722 0.87327 0.96726 0.92066 1.21770 1.00645 0.98737 0.91493 1.21102 0.91210 0.97752 1.01012 1.20542 0.91858 1.02398 0.92035 1.98372 1.50075 1.78467 1.76768 1.20685 0.99307 1.00976 0.93119 1.17029 0.96016 1.04746 0.77951 1.91497 1.96236 1.93029 1.30435 1.23126 0.77733 1.00624 1.00055 0.92247 0.77852 0.89980 0.89400 0.92301 0.92014 0.75218 0.80460 0.83937 0.83482 0.90788 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.15 13.96 55.43 0.77 -24.37 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.95 22.06 24.75 -169.99 -4.21 17.86 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.33 -7.88 7.11 56.52 0.40 -7.47 16 6 H -0.27 -6.08 5.44 56.52 0.31 -5.77 16 7 C -0.55 -13.80 8.87 -34.44 -0.31 -14.10 16 8 H 0.08 2.26 8.01 -52.48 -0.42 1.84 16 9 C 0.22 4.51 0.70 -89.63 -0.06 4.44 16 10 O -0.56 -11.39 8.60 -35.23 -0.30 -11.69 16 11 C -0.12 -2.10 5.95 -24.89 -0.15 -2.25 16 12 C 0.09 1.38 6.16 -3.06 -0.02 1.36 16 13 N -0.62 -10.25 3.33 -176.23 -0.59 -10.83 16 14 C 0.72 11.78 8.34 -86.91 -0.72 11.06 16 15 O -0.57 -10.70 13.49 5.28 0.07 -10.63 16 16 N -0.68 -9.04 5.31 -14.15 -0.08 -9.11 16 17 C 0.16 2.03 6.51 -83.56 -0.54 1.49 16 18 C -0.11 -1.32 8.79 -39.41 -0.35 -1.67 16 19 C -0.09 -0.94 9.82 -39.56 -0.39 -1.33 16 20 C -0.04 -0.40 6.32 -39.48 -0.25 -0.65 16 21 Cl -0.07 -0.58 28.95 -51.86 -1.50 -2.08 16 22 C -0.12 -1.18 9.80 -39.51 -0.39 -1.57 16 23 C 0.07 0.73 7.31 -39.26 -0.29 0.45 16 24 F -0.13 -1.49 16.75 2.25 0.04 -1.45 16 25 C 0.11 2.00 6.09 -2.53 -0.02 1.99 16 26 H 0.27 7.21 8.31 -40.82 -0.34 6.88 16 27 H 0.37 6.95 8.51 45.56 0.39 7.34 16 28 H 0.08 1.50 6.89 -51.92 -0.36 1.14 16 29 H 0.09 1.53 8.03 -51.93 -0.42 1.11 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.41 4.67 7.36 -40.82 -0.30 4.37 16 33 H 0.18 2.54 5.40 -52.49 -0.28 2.26 16 34 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.07 1.41 8.04 -51.93 -0.42 0.99 16 37 H 0.07 1.42 7.99 -51.93 -0.42 1.01 16 LS Contribution 325.86 15.07 4.91 4.91 Total: -1.00 -29.16 325.86 -7.60 -36.76 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -3.14 Total: 9.60 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -3.58 Total: 1.04 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.11 Total: -44.32 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.23 Total: -22.32 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.21 Total: 17.86 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.16 -7.60 -36.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413505381.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.465 kcal (2) G-P(sol) polarization free energy of solvation -29.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds