Wall clock time and date at job start Tue Mar 31 2020 15:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99847 * 2 1 4 4 H 1.48504 * 109.47058 * 269.08081 * 3 2 1 5 5 H 1.48496 * 109.47578 * 29.07901 * 3 2 1 6 6 H 1.48504 * 109.47075 * 149.08205 * 3 2 1 7 7 C 1.37877 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00013 * 353.97714 * 7 2 1 9 9 C 1.50703 * 120.00128 * 173.98355 * 7 2 1 10 10 O 1.42909 * 110.88216 * 330.40931 * 9 7 2 11 11 C 1.55146 * 111.04080 * 94.31310 * 9 7 2 12 12 C 1.54340 * 103.02286 * 153.39797 * 11 9 7 13 13 N 1.47019 * 107.26002 * 338.14317 * 12 11 9 14 14 C 1.34776 * 125.64571 * 178.85167 * 13 12 11 15 15 O 1.21592 * 120.00195 * 179.68758 * 14 13 12 16 16 N 1.34782 * 119.99734 * 359.68785 * 14 13 12 17 17 C 1.40132 * 119.99794 * 185.44163 * 16 14 13 18 18 C 1.38793 * 120.06554 * 19.48850 * 17 16 14 19 19 C 1.38146 * 119.96924 * 180.02562 * 18 17 16 20 20 C 1.38378 * 120.09458 * 0.02562 * 19 18 17 21 21 Cl 1.73603 * 119.93196 * 179.97438 * 20 19 18 22 22 C 1.38366 * 120.13200 * 359.96611 * 20 19 18 23 23 C 1.38300 * 120.02913 * 0.03992 * 22 20 19 24 24 F 1.35100 * 120.04804 * 180.25812 * 23 22 20 25 25 C 1.47428 * 108.70709 * 358.58244 * 13 12 11 26 26 H 0.97001 * 119.99894 * 0.02562 * 1 2 3 27 27 H 0.96696 * 113.99896 * 301.21004 * 10 9 7 28 28 H 1.09009 * 110.72382 * 271.95575 * 11 9 7 29 29 H 1.08997 * 110.72004 * 35.22904 * 11 9 7 30 30 H 1.08996 * 109.98734 * 218.66724 * 12 11 9 31 31 H 1.08998 * 109.77591 * 97.49923 * 12 11 9 32 32 H 0.96995 * 120.00030 * 5.44121 * 16 14 13 33 33 H 1.08002 * 120.01448 * 359.97438 * 18 17 16 34 34 H 1.08000 * 119.94867 * 180.02562 * 19 18 17 35 35 H 1.07999 * 119.98645 * 180.02562 * 22 20 19 36 36 H 1.08993 * 110.36395 * 143.19450 * 25 13 12 37 37 H 1.08998 * 110.36730 * 265.41143 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5160 2.0352 -1.3999 5 1 1.4370 2.6582 0.6804 6 1 3.5368 1.4459 0.7194 7 6 2.0045 -1.1941 0.0005 8 1 1.4690 -2.1268 0.0991 9 6 3.5053 -1.1978 -0.1363 10 8 3.9501 -0.0744 -0.8996 11 6 4.1914 -1.2316 1.2549 12 6 5.5481 -1.9046 0.9573 13 7 5.3930 -2.6657 -0.2909 14 6 6.3602 -3.3785 -0.9015 15 8 6.1164 -3.9761 -1.9320 16 7 7.5977 -3.4290 -0.3698 17 6 8.6317 -4.0741 -1.0615 18 6 8.5192 -4.3018 -2.4260 19 6 9.5395 -4.9383 -3.1058 20 6 10.6736 -5.3500 -2.4282 21 17 11.9530 -6.1502 -3.2866 22 6 10.7901 -5.1249 -1.0680 23 6 9.7718 -4.4882 -0.3821 24 9 9.8874 -4.2636 0.9451 25 6 4.0027 -2.5253 -0.7607 26 1 -0.4850 0.8401 -0.0004 27 1 3.5801 -0.0341 -1.7920 28 1 4.3353 -0.2215 1.6386 29 1 3.6124 -1.8327 1.9559 30 1 5.8164 -2.5780 1.7713 31 1 6.3183 -1.1432 0.8341 32 1 7.7725 -3.0188 0.4916 33 1 7.6341 -3.9821 -2.9559 34 1 9.4518 -5.1150 -4.1677 35 1 11.6764 -5.4468 -0.5415 36 1 3.9740 -2.4669 -1.8487 37 1 3.3976 -3.3614 -0.4103 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413505381.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:28 Heat of formation + Delta-G solvation = -104.852188 kcal Electronic energy + Delta-G solvation = -25418.395746 eV Core-core repulsion = 21328.862472 eV Total energy + Delta-G solvation = -4089.533274 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.07060 -41.98365 -40.31283 -39.23101 -37.52788 -36.50324 -35.85690 -34.44742 -32.29066 -31.77161 -30.39704 -29.83955 -27.12419 -24.83558 -24.15800 -23.43670 -21.62144 -21.22130 -19.97477 -19.35499 -18.77254 -18.42129 -17.52755 -17.22672 -17.12007 -16.78050 -16.50578 -16.45716 -16.04767 -15.52640 -15.30422 -14.97503 -14.59527 -14.55379 -14.27094 -14.09294 -13.87500 -13.46833 -13.41307 -13.20794 -13.08121 -12.74158 -12.67770 -12.34148 -12.22497 -12.05155 -11.97473 -11.51338 -11.28980 -11.11107 -10.64263 -10.40238 -10.05246 -9.73917 -9.08245 -8.34343 -6.48310 -0.17674 -0.00316 0.99201 1.26429 1.49499 1.55937 1.77367 1.79802 2.42771 2.43924 2.66591 2.96897 2.99168 3.44267 3.57141 3.78480 3.87291 3.95575 4.05591 4.21821 4.29337 4.40566 4.47087 4.55323 4.80489 4.83507 4.90688 4.94693 5.02488 5.16156 5.17116 5.20274 5.34174 5.50132 5.67543 5.80367 6.02702 6.58239 6.67110 6.88378 7.20154 7.28638 8.78645 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.030291 B = 0.002652 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.146848 B =10555.035203 C =10900.547263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.023 3.977 3 Si 1.009 2.991 4 H -0.285 1.285 5 H -0.340 1.340 6 H -0.254 1.254 7 C -0.547 4.547 8 H 0.047 0.953 9 C 0.217 3.783 10 O -0.557 6.557 11 C -0.117 4.117 12 C 0.100 3.900 13 N -0.620 5.620 14 C 0.719 3.281 15 O -0.603 6.603 16 N -0.668 5.668 17 C 0.140 3.860 18 C -0.119 4.119 19 C -0.086 4.086 20 C -0.038 4.038 21 Cl -0.052 7.052 22 C -0.113 4.113 23 C 0.068 3.932 24 F -0.132 7.132 25 C 0.117 3.883 26 H 0.268 0.732 27 H 0.380 0.620 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.422 0.578 33 H 0.157 0.843 34 H 0.159 0.841 35 H 0.171 0.829 36 H 0.066 0.934 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.175 -7.937 -1.188 25.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.177 4.177 3 Si 0.843 3.157 4 H -0.212 1.212 5 H -0.273 1.273 6 H -0.179 1.179 7 C -0.585 4.585 8 H 0.065 0.935 9 C 0.176 3.824 10 O -0.366 6.366 11 C -0.155 4.155 12 C -0.022 4.022 13 N -0.355 5.355 14 C 0.422 3.578 15 O -0.483 6.483 16 N -0.314 5.314 17 C 0.042 3.958 18 C -0.140 4.140 19 C -0.106 4.106 20 C -0.066 4.066 21 Cl -0.023 7.023 22 C -0.133 4.133 23 C 0.045 3.955 24 F -0.111 7.111 25 C -0.007 4.007 26 H 0.076 0.924 27 H 0.229 0.771 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.260 0.740 33 H 0.175 0.825 34 H 0.177 0.823 35 H 0.188 0.812 36 H 0.084 0.916 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 24.255 -8.222 -1.394 25.649 hybrid contribution -0.688 0.749 0.115 1.023 sum 23.567 -7.473 -1.279 24.757 Atomic orbital electron populations 1.70080 1.08587 1.28591 1.50034 1.25896 0.95372 1.03724 0.92696 0.84693 0.76884 0.75922 0.78220 1.21217 1.27297 1.17887 1.21323 0.90745 0.93919 1.52547 0.93483 1.20133 0.91355 0.81703 0.89228 1.86149 1.72883 1.47465 1.30133 1.22841 0.94117 1.01562 0.96963 1.22264 0.99185 0.95333 0.85406 1.47667 1.10534 1.50276 1.27058 1.15422 0.79848 0.79655 0.82864 1.90797 1.81351 1.50447 1.25719 1.42400 1.06576 1.58085 1.24381 1.17873 0.87735 0.97867 0.92308 1.21602 1.00738 0.99917 0.91706 1.21239 0.90727 0.96787 1.01823 1.20613 0.91925 1.01823 0.92239 1.98385 1.49287 1.78092 1.76503 1.20938 0.99502 0.99739 0.93090 1.17026 0.95756 1.04716 0.78004 1.91502 1.96203 1.93037 1.30321 1.22737 0.79258 0.99241 0.99417 0.92374 0.77095 0.89934 0.89441 0.89005 0.90138 0.74003 0.82540 0.82297 0.81170 0.91593 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.94 13.96 21.45 0.30 -54.64 16 2 C 0.02 1.24 5.47 84.65 0.46 1.70 16 3 Si 1.01 45.37 24.75 68.60 1.70 47.07 16 4 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.34 -16.06 7.11 99.48 0.71 -15.35 16 6 H -0.25 -10.70 5.44 99.48 0.54 -10.16 16 7 C -0.55 -27.80 8.87 25.60 0.23 -27.57 16 8 H 0.05 2.68 8.01 -2.91 -0.02 2.65 16 9 C 0.22 8.71 0.70 -10.15 -0.01 8.70 16 10 O -0.56 -21.79 8.60 -148.98 -1.28 -23.07 16 11 C -0.12 -3.93 5.95 31.78 0.19 -3.74 16 12 C 0.10 2.63 6.16 86.74 0.53 3.17 16 13 N -0.62 -19.61 3.33 -829.74 -2.76 -22.37 16 14 C 0.72 22.69 8.34 179.05 1.49 24.18 16 15 O -0.60 -22.38 13.49 -4.00 -0.05 -22.43 16 16 N -0.67 -16.50 5.31 -316.95 -1.68 -18.18 16 17 C 0.14 3.31 6.51 38.14 0.25 3.56 16 18 C -0.12 -2.85 8.79 22.38 0.20 -2.66 16 19 C -0.09 -1.62 9.82 22.28 0.22 -1.40 16 20 C -0.04 -0.65 6.32 22.33 0.14 -0.51 16 21 Cl -0.05 -0.77 28.95 -2.72 -0.08 -0.85 16 22 C -0.11 -1.86 9.80 22.31 0.22 -1.64 16 23 C 0.07 1.35 7.31 22.47 0.16 1.51 16 24 F -0.13 -2.58 16.75 44.97 0.75 -1.82 16 25 C 0.12 4.36 6.09 86.85 0.53 4.89 16 26 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 27 H 0.38 13.69 8.51 -74.06 -0.63 13.06 16 28 H 0.08 2.79 6.89 -2.38 -0.02 2.77 16 29 H 0.09 2.93 8.03 -2.39 -0.02 2.91 16 30 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.42 8.38 7.36 -92.71 -0.68 7.70 16 33 H 0.16 4.51 5.40 -2.91 -0.02 4.49 16 34 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 35 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 36 H 0.07 2.54 8.04 -2.39 -0.02 2.52 16 37 H 0.06 2.49 7.99 -2.39 -0.02 2.47 16 Total: -1.00 -63.70 325.86 1.19 -62.51 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: -0.33 Total: 23.59 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 4.62 Total: 10.20 kcal Atomic # 7 Polarization: -91.05 SS G_CDS: -4.14 Total: -95.19 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -1.34 Total: -45.50 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.75 Total: -1.82 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.70 Total: 47.07 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -0.08 Total: -0.85 kcal Total: -63.70 1.19 -62.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413505381.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.342 kcal (2) G-P(sol) polarization free energy of solvation -63.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds