Wall clock time and date at job start Tue Mar 31 2020 15:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86802 * 119.99848 * 2 1 4 4 H 1.48496 * 109.46800 * 239.99570 * 3 2 1 5 5 H 1.48490 * 109.47177 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46923 * 120.00156 * 3 2 1 7 7 C 1.37876 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00109 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00074 * 0.02562 * 7 2 1 10 10 O 1.42906 * 110.88677 * 62.42245 * 9 7 2 11 11 C 1.55153 * 111.03679 * 186.33031 * 9 7 2 12 12 C 1.54342 * 103.01657 * 153.39687 * 11 9 7 13 13 N 1.47021 * 107.26581 * 338.13674 * 12 11 9 14 14 C 1.34774 * 125.64396 * 178.85012 * 13 12 11 15 15 O 1.21590 * 119.99759 * 179.69278 * 14 13 12 16 16 N 1.34774 * 120.00143 * 359.69813 * 14 13 12 17 17 C 1.39998 * 119.99852 * 185.31699 * 16 14 13 18 18 C 1.38884 * 120.04519 * 213.30055 * 17 16 14 19 19 C 1.38115 * 119.98949 * 179.97438 * 18 17 16 20 20 C 1.38345 * 120.08089 * 0.02608 * 19 18 17 21 21 Cl 1.73605 * 119.95288 * 179.97438 * 20 19 18 22 22 C 1.38585 * 120.09418 * 359.69977 * 20 19 18 23 23 F 1.35099 * 119.99835 * 180.30016 * 22 20 19 24 24 C 1.38344 * 120.00360 * 0.55537 * 22 20 19 25 25 C 1.47426 * 108.70239 * 358.58992 * 13 12 11 26 26 H 0.97001 * 119.99392 * 0.02562 * 1 2 3 27 27 H 0.96694 * 113.99786 * 297.58039 * 10 9 7 28 28 H 1.08997 * 110.72215 * 271.95079 * 11 9 7 29 29 H 1.08995 * 110.72185 * 35.22811 * 11 9 7 30 30 H 1.09004 * 109.98602 * 218.66292 * 12 11 9 31 31 H 1.09000 * 109.77834 * 97.50130 * 12 11 9 32 32 H 0.96996 * 120.00061 * 5.31297 * 16 14 13 33 33 H 1.08001 * 120.00431 * 359.96063 * 18 17 16 34 34 H 1.08001 * 119.95653 * 180.02562 * 19 18 17 35 35 H 1.07997 * 120.03700 * 179.74409 * 24 22 20 36 36 H 1.08998 * 110.36485 * 143.19238 * 25 13 12 37 37 H 1.09004 * 110.36533 * 265.40286 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 0.4615 -2.6316 -1.1832 11 6 2.2190 -3.7011 0.1608 12 6 1.3285 -4.7801 0.8126 13 7 0.2053 -4.0864 1.4598 14 6 -0.8080 -4.6796 2.1213 15 8 -1.6842 -4.0031 2.6243 16 7 -0.8500 -6.0227 2.2255 17 6 -1.9572 -6.6448 2.8146 18 6 -1.7912 -7.8156 3.5429 19 6 -2.8842 -8.4281 4.1240 20 6 -4.1451 -7.8770 3.9812 21 17 -5.5168 -8.6500 4.7125 22 6 -4.3139 -6.7057 3.2599 23 9 -5.5452 -6.1660 3.1268 24 6 -3.2224 -6.0920 2.6719 25 6 0.3745 -2.6342 1.2706 26 1 -0.4849 0.8401 -0.0004 27 1 -0.2243 -1.9564 -1.2761 28 1 2.5842 -4.0344 -0.8105 29 1 3.0491 -3.4428 0.8182 30 1 1.8998 -5.3351 1.5568 31 1 0.9532 -5.4600 0.0477 32 1 -0.1131 -6.5583 1.8923 33 1 -0.8075 -8.2472 3.6547 34 1 -2.7544 -9.3383 4.6907 35 1 -3.3540 -5.1814 2.1062 36 1 -0.5930 -2.1565 1.1163 37 1 0.8802 -2.1959 2.1310 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414389316.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:43 Heat of formation + Delta-G solvation = -94.117239 kcal Electronic energy + Delta-G solvation = -25346.930078 eV Core-core repulsion = 21257.862307 eV Total energy + Delta-G solvation = -4089.067772 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -48.99451 -40.60571 -38.95988 -37.51813 -36.62644 -34.57639 -34.28951 -32.29916 -30.96901 -30.50230 -29.17301 -27.84484 -25.27732 -23.62406 -22.99940 -22.24512 -19.89122 -19.78018 -18.52883 -17.61572 -17.15751 -16.84299 -16.53606 -15.85881 -15.79458 -15.36989 -15.13666 -14.65620 -14.43205 -14.12996 -13.76187 -13.52230 -13.17862 -13.09473 -12.90407 -12.53932 -12.29320 -12.12963 -11.90547 -11.73834 -11.53397 -11.12312 -11.06677 -10.93222 -10.73614 -10.55425 -10.31572 -10.18327 -9.88208 -9.46753 -9.04133 -8.76342 -8.50252 -8.30097 -7.87806 -6.34076 -4.44317 0.78020 0.95182 1.87428 2.67021 3.11329 3.18544 3.25067 3.26186 3.56547 3.91052 4.13336 4.23055 4.50228 4.77435 4.91916 4.96558 5.21500 5.24117 5.48124 5.56144 5.60472 5.68598 5.79437 5.86200 5.89804 6.06089 6.24192 6.37922 6.57320 6.71776 6.74038 6.75124 7.04605 7.19021 7.36281 7.67452 7.94102 8.17503 8.59086 8.74232 9.22021 9.30860 10.72966 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.026171 B = 0.002675 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.626755 B =10463.850165 C =11116.102098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.072 3.928 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.249 3.751 10 O -0.582 6.582 11 C -0.115 4.115 12 C 0.099 3.901 13 N -0.619 5.619 14 C 0.712 3.288 15 O -0.574 6.574 16 N -0.688 5.688 17 C 0.219 3.781 18 C -0.155 4.155 19 C -0.060 4.060 20 C -0.102 4.102 21 Cl -0.060 7.060 22 C 0.135 3.865 23 F -0.125 7.125 24 C -0.150 4.150 25 C 0.111 3.889 26 H 0.272 0.728 27 H 0.382 0.618 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.409 0.591 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.160 0.840 36 H 0.088 0.912 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.466 -16.973 5.989 18.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.578 4.578 8 H 0.085 0.915 9 C 0.209 3.791 10 O -0.391 6.391 11 C -0.153 4.153 12 C -0.024 4.024 13 N -0.355 5.355 14 C 0.415 3.585 15 O -0.451 6.451 16 N -0.335 5.335 17 C 0.121 3.879 18 C -0.177 4.177 19 C -0.079 4.079 20 C -0.131 4.131 21 Cl -0.031 7.031 22 C 0.114 3.886 23 F -0.103 7.103 24 C -0.172 4.172 25 C -0.010 4.010 26 H 0.082 0.918 27 H 0.232 0.768 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.246 0.754 33 H 0.159 0.841 34 H 0.163 0.837 35 H 0.178 0.822 36 H 0.107 0.893 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.024 -16.833 6.292 18.223 hybrid contribution 0.140 1.172 0.054 1.182 sum -2.884 -15.660 6.346 17.141 Atomic orbital electron populations 1.69701 1.05987 1.28168 1.49126 1.25087 0.95061 0.99820 0.93236 0.86445 0.79524 0.82033 0.78820 1.19977 1.21053 1.20000 1.21393 0.93617 0.89927 1.52870 0.91497 1.19623 0.86572 0.91647 0.81285 1.86106 1.51589 1.57170 1.44237 1.22597 0.97521 0.94990 1.00220 1.22052 0.88212 0.96355 0.95770 1.48036 1.22960 1.10308 1.54148 1.15521 0.82540 0.80681 0.79800 1.90941 1.39258 1.62542 1.52380 1.42830 1.21022 1.06458 1.63214 1.17271 0.86098 0.92095 0.92473 1.20857 0.99678 0.97219 0.99900 1.20643 0.89160 0.99731 0.98388 1.20864 0.90545 0.96639 1.05023 1.98367 1.42835 1.80236 1.81635 1.17149 0.80789 0.91933 0.98752 1.91545 1.39594 1.85171 1.93979 1.21210 0.89625 1.03072 1.03272 1.23293 1.02946 0.74867 0.99942 0.91833 0.76812 0.90532 0.90251 0.92748 0.92227 0.75440 0.84129 0.83719 0.82210 0.89327 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.08 10.69 55.43 0.59 -22.49 16 2 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 3 Si 0.90 19.79 29.54 -169.99 -5.02 14.77 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 5 H -0.29 -6.27 7.11 56.52 0.40 -5.86 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.54 -13.41 8.27 -34.44 -0.28 -13.70 16 8 H 0.07 1.62 7.79 -52.49 -0.41 1.22 16 9 C 0.25 5.67 0.87 -89.62 -0.08 5.60 16 10 O -0.58 -14.08 13.16 -35.23 -0.46 -14.54 16 11 C -0.12 -2.08 6.13 -24.89 -0.15 -2.24 16 12 C 0.10 1.53 6.16 -3.05 -0.02 1.51 16 13 N -0.62 -11.69 3.33 -176.23 -0.59 -12.28 16 14 C 0.71 13.20 8.23 -86.92 -0.72 12.49 16 15 O -0.57 -12.77 14.28 5.29 0.08 -12.70 16 16 N -0.69 -9.35 5.30 -14.22 -0.08 -9.42 16 17 C 0.22 2.85 6.28 -83.68 -0.53 2.33 16 18 C -0.16 -1.50 9.96 -39.39 -0.39 -1.89 16 19 C -0.06 -0.56 9.82 -39.59 -0.39 -0.95 16 20 C -0.10 -1.20 6.33 -39.41 -0.25 -1.45 16 21 Cl -0.06 -0.65 28.61 -51.86 -1.48 -2.13 16 22 C 0.13 1.88 7.27 -39.41 -0.29 1.59 16 23 F -0.12 -1.85 16.83 2.25 0.04 -1.81 16 24 C -0.15 -2.25 8.63 -39.33 -0.34 -2.59 16 25 C 0.11 2.51 5.38 -2.53 -0.01 2.50 16 26 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 27 H 0.38 9.57 7.56 45.56 0.34 9.91 16 28 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.08 1.35 8.03 -51.93 -0.42 0.93 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.41 4.20 7.81 -40.82 -0.32 3.88 16 33 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.16 2.80 6.41 -52.49 -0.34 2.46 16 36 H 0.09 2.29 7.33 -51.93 -0.38 1.91 16 37 H 0.06 1.45 8.03 -51.93 -0.42 1.03 16 LS Contribution 333.50 15.07 5.03 5.03 Total: -1.00 -28.65 333.50 -8.62 -37.27 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -3.18 Total: 13.40 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -3.54 Total: 4.91 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: -0.07 Total: -44.19 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.39 Total: -27.24 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.48 Total: -2.13 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.65 -8.62 -37.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414389316.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.845 kcal (2) G-P(sol) polarization free energy of solvation -28.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds