Wall clock time and date at job start Tue Mar 31 2020 15:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86802 * 119.99848 * 2 1 4 4 H 1.48496 * 109.46800 * 239.99570 * 3 2 1 5 5 H 1.48490 * 109.47177 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46923 * 120.00156 * 3 2 1 7 7 C 1.37876 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00109 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00074 * 0.02562 * 7 2 1 10 10 O 1.42906 * 110.88677 * 62.42245 * 9 7 2 11 11 C 1.55153 * 111.03679 * 186.33031 * 9 7 2 12 12 C 1.54342 * 103.01657 * 153.39687 * 11 9 7 13 13 N 1.47021 * 107.26581 * 338.13674 * 12 11 9 14 14 C 1.34774 * 125.64396 * 178.85012 * 13 12 11 15 15 O 1.21590 * 119.99759 * 179.69278 * 14 13 12 16 16 N 1.34774 * 120.00143 * 359.69813 * 14 13 12 17 17 C 1.39998 * 119.99852 * 185.31699 * 16 14 13 18 18 C 1.38884 * 120.04519 * 213.30055 * 17 16 14 19 19 C 1.38115 * 119.98949 * 179.97438 * 18 17 16 20 20 C 1.38345 * 120.08089 * 0.02608 * 19 18 17 21 21 Cl 1.73605 * 119.95288 * 179.97438 * 20 19 18 22 22 C 1.38585 * 120.09418 * 359.69977 * 20 19 18 23 23 F 1.35099 * 119.99835 * 180.30016 * 22 20 19 24 24 C 1.38344 * 120.00360 * 0.55537 * 22 20 19 25 25 C 1.47426 * 108.70239 * 358.58992 * 13 12 11 26 26 H 0.97001 * 119.99392 * 0.02562 * 1 2 3 27 27 H 0.96694 * 113.99786 * 297.58039 * 10 9 7 28 28 H 1.08997 * 110.72215 * 271.95079 * 11 9 7 29 29 H 1.08995 * 110.72185 * 35.22811 * 11 9 7 30 30 H 1.09004 * 109.98602 * 218.66292 * 12 11 9 31 31 H 1.09000 * 109.77834 * 97.50130 * 12 11 9 32 32 H 0.96996 * 120.00061 * 5.31297 * 16 14 13 33 33 H 1.08001 * 120.00431 * 359.96063 * 18 17 16 34 34 H 1.08001 * 119.95653 * 180.02562 * 19 18 17 35 35 H 1.07997 * 120.03700 * 179.74409 * 24 22 20 36 36 H 1.08998 * 110.36485 * 143.19238 * 25 13 12 37 37 H 1.09004 * 110.36533 * 265.40286 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 0.4615 -2.6316 -1.1832 11 6 2.2190 -3.7011 0.1608 12 6 1.3285 -4.7801 0.8126 13 7 0.2053 -4.0864 1.4598 14 6 -0.8080 -4.6796 2.1213 15 8 -1.6842 -4.0031 2.6243 16 7 -0.8500 -6.0227 2.2255 17 6 -1.9572 -6.6448 2.8146 18 6 -1.7912 -7.8156 3.5429 19 6 -2.8842 -8.4281 4.1240 20 6 -4.1451 -7.8770 3.9812 21 17 -5.5168 -8.6500 4.7125 22 6 -4.3139 -6.7057 3.2599 23 9 -5.5452 -6.1660 3.1268 24 6 -3.2224 -6.0920 2.6719 25 6 0.3745 -2.6342 1.2706 26 1 -0.4849 0.8401 -0.0004 27 1 -0.2243 -1.9564 -1.2761 28 1 2.5842 -4.0344 -0.8105 29 1 3.0491 -3.4428 0.8182 30 1 1.8998 -5.3351 1.5568 31 1 0.9532 -5.4600 0.0477 32 1 -0.1131 -6.5583 1.8923 33 1 -0.8075 -8.2472 3.6547 34 1 -2.7544 -9.3383 4.6907 35 1 -3.3540 -5.1814 2.1062 36 1 -0.5930 -2.1565 1.1163 37 1 0.8802 -2.1959 2.1310 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414389316.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:42 Heat of formation + Delta-G solvation = -113.601310 kcal Electronic energy + Delta-G solvation = -25347.774971 eV Core-core repulsion = 21257.862307 eV Total energy + Delta-G solvation = -4089.912665 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.08934 -41.88349 -40.18227 -38.97029 -37.59763 -36.14848 -35.63180 -34.23255 -32.12115 -31.76169 -30.33271 -29.46037 -27.03042 -24.86853 -24.12068 -23.39362 -21.50388 -21.16939 -19.73516 -19.08565 -18.79688 -17.84424 -17.61867 -17.17376 -16.92289 -16.83418 -16.72709 -16.24635 -15.94706 -15.29255 -14.99630 -14.79018 -14.64338 -14.49694 -14.11445 -13.81881 -13.53296 -13.44748 -13.33330 -13.10821 -12.81297 -12.79550 -12.53405 -12.33953 -12.27671 -12.08755 -12.00300 -11.44873 -11.23661 -11.17957 -10.66307 -10.33527 -10.02262 -9.63109 -9.14081 -8.24955 -6.41994 -0.18734 0.01731 0.96259 1.38163 1.44171 1.46234 1.52539 1.88212 2.37855 2.45543 2.77582 3.01600 3.06536 3.58926 3.78048 3.95266 3.96625 4.08010 4.17897 4.32145 4.34163 4.62066 4.62412 4.74758 4.83459 4.91923 5.01038 5.06310 5.09541 5.21294 5.26048 5.37429 5.46471 5.68911 5.75676 5.96698 6.09150 6.64918 6.85485 7.26593 7.34450 7.35060 8.79682 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.026171 B = 0.002675 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.626755 B =10463.850165 C =11116.102098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.026 3.974 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.269 1.269 7 C -0.555 4.555 8 H 0.071 0.929 9 C 0.231 3.769 10 O -0.587 6.587 11 C -0.111 4.111 12 C 0.101 3.899 13 N -0.624 5.624 14 C 0.709 3.291 15 O -0.622 6.622 16 N -0.665 5.665 17 C 0.199 3.801 18 C -0.126 4.126 19 C -0.045 4.045 20 C -0.101 4.101 21 Cl -0.051 7.051 22 C 0.111 3.889 23 F -0.140 7.140 24 C -0.174 4.174 25 C 0.127 3.873 26 H 0.268 0.732 27 H 0.372 0.628 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.429 0.571 33 H 0.186 0.814 34 H 0.187 0.813 35 H 0.121 0.879 36 H 0.044 0.956 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.264 -20.240 7.032 21.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.175 4.175 3 Si 0.788 3.212 4 H -0.194 1.194 5 H -0.215 1.215 6 H -0.194 1.194 7 C -0.593 4.593 8 H 0.089 0.911 9 C 0.191 3.809 10 O -0.395 6.395 11 C -0.148 4.148 12 C -0.021 4.021 13 N -0.359 5.359 14 C 0.411 3.589 15 O -0.502 6.502 16 N -0.315 5.315 17 C 0.102 3.898 18 C -0.147 4.147 19 C -0.064 4.064 20 C -0.129 4.129 21 Cl -0.023 7.023 22 C 0.090 3.910 23 F -0.118 7.118 24 C -0.196 4.196 25 C 0.003 3.997 26 H 0.077 0.923 27 H 0.221 0.779 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.119 0.881 31 H 0.097 0.903 32 H 0.269 0.731 33 H 0.204 0.796 34 H 0.204 0.796 35 H 0.139 0.861 36 H 0.063 0.937 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.787 -20.180 7.325 21.483 hybrid contribution -0.595 2.112 -0.236 2.206 sum -1.382 -18.069 7.089 19.458 Atomic orbital electron populations 1.69839 1.07177 1.28403 1.50053 1.25828 0.95705 1.02846 0.93155 0.85540 0.78289 0.78435 0.78975 1.19445 1.21456 1.19389 1.21775 0.94011 0.91144 1.52365 0.91116 1.19885 0.87210 0.93327 0.80509 1.86097 1.51463 1.56737 1.45166 1.22603 0.97190 0.93560 1.01468 1.22277 0.86974 0.95573 0.97261 1.47913 1.24302 1.09016 1.54706 1.15684 0.81685 0.82140 0.79348 1.90917 1.40901 1.64204 1.54208 1.42425 1.21764 1.04471 1.62809 1.17509 0.84881 0.93486 0.93947 1.21285 1.01761 0.94767 0.96853 1.21159 0.87605 1.00357 0.97295 1.21072 0.91935 0.95748 1.04189 1.98373 1.42817 1.79759 1.81308 1.17324 0.80065 0.93272 1.00327 1.91496 1.40387 1.85658 1.94288 1.21019 0.91536 1.02567 1.04478 1.22753 1.00307 0.77238 0.99391 0.92262 0.77922 0.89485 0.89047 0.88083 0.90316 0.73073 0.79630 0.79596 0.86103 0.93706 0.93824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.49 10.69 21.45 0.23 -49.26 16 2 C 0.03 1.32 5.29 84.65 0.45 1.77 16 3 Si 0.96 41.09 29.54 68.60 2.03 43.11 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 5 H -0.29 -12.40 7.11 99.48 0.71 -11.70 16 6 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 7 C -0.55 -27.82 8.27 25.60 0.21 -27.61 16 8 H 0.07 3.40 7.79 -2.91 -0.02 3.38 16 9 C 0.23 10.61 0.87 -10.15 -0.01 10.61 16 10 O -0.59 -29.05 13.16 -148.98 -1.96 -31.01 16 11 C -0.11 -3.76 6.13 31.79 0.19 -3.57 16 12 C 0.10 2.79 6.16 86.74 0.53 3.33 16 13 N -0.62 -23.38 3.33 -829.72 -2.76 -26.14 16 14 C 0.71 26.43 8.23 179.06 1.47 27.90 16 15 O -0.62 -29.22 14.28 -4.00 -0.06 -29.28 16 16 N -0.67 -16.79 5.30 -317.17 -1.68 -18.47 16 17 C 0.20 4.85 6.28 38.13 0.24 5.09 16 18 C -0.13 -1.86 9.96 22.40 0.22 -1.63 16 19 C -0.05 -0.65 9.82 22.27 0.22 -0.43 16 20 C -0.10 -2.17 6.33 22.38 0.14 -2.03 16 21 Cl -0.05 -1.03 28.61 -2.72 -0.08 -1.10 16 22 C 0.11 3.14 7.27 22.38 0.16 3.30 16 23 F -0.14 -4.40 16.83 44.97 0.76 -3.64 16 24 C -0.17 -5.41 8.63 22.43 0.19 -5.22 16 25 C 0.13 5.95 5.38 86.85 0.47 6.42 16 26 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 27 H 0.37 19.63 7.56 -74.06 -0.56 19.07 16 28 H 0.09 2.77 8.14 -2.39 -0.02 2.76 16 29 H 0.09 2.87 8.03 -2.39 -0.02 2.85 16 30 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 31 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.43 7.10 7.81 -92.71 -0.72 6.37 16 33 H 0.19 1.14 8.06 -2.91 -0.02 1.12 16 34 H 0.19 1.23 8.06 -2.91 -0.02 1.21 16 35 H 0.12 4.69 6.41 -2.91 -0.02 4.67 16 36 H 0.04 2.47 7.33 -2.39 -0.02 2.46 16 37 H 0.04 2.15 8.03 -2.39 -0.02 2.13 16 Total: -1.00 -68.21 333.50 0.84 -67.37 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: -0.14 Total: 30.50 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: 4.50 Total: 17.92 kcal Atomic # 7 Polarization: -89.66 SS G_CDS: -4.21 Total: -93.87 kcal Atomic # 8 Polarization: -58.27 SS G_CDS: -2.02 Total: -60.29 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.76 Total: -3.64 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.11 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.10 kcal Total: -68.21 0.84 -67.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414389316.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.229 kcal (2) G-P(sol) polarization free energy of solvation -68.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds